EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0015563 (Gene tree)
Gene ID: -
Gene Symbol: Rc3h1
Alias: 5730557L09Rik|roquin
Full Name: RING CCCH (C3H) domains 1
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Plus strand
Length: 69482 bases
Position: chr1:162968502-163037983
Accession: 2685397
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0021748	zf-CCCH	PF00642.24	0.00037	1	1
MGP_SPRETEiJ_P0021747	zf-CCCH	PF00642.24	0.00037	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0021749	-	639	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0021748	-	3476	-	MGP_SPRETEiJ_P0021748	1121 (aa)	-	-
MGP_SPRETEiJ_T0021747	-	11007	-	MGP_SPRETEiJ_P0021747	1130 (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0015563's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0015563's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_SPRETEiJ_G0015563	Rc3h1	92	54.022	MGP_SPRETEiJ_G0024436	Rc3h2	98	80.892

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0015563	Rc3h1	100	93.027	ENSG00000135870	RC3H1	100	93.469	Homo_sapiens
MGP_SPRETEiJ_G0015563	Rc3h1	100	93.375	ENSAMEG00000015657	RC3H1	100	93.375	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0015563	Rc3h1	100	85.764	ENSAPLG00000005341	RC3H1	100	85.764	Anas_platyrhynchos
MGP_SPRETEiJ_G0015563	Rc3h1	100	82.955	ENSACAG00000015271	RC3H1	100	83.129	Anolis_carolinensis
MGP_SPRETEiJ_G0015563	Rc3h1	100	93.027	ENSANAG00000036716	RC3H1	100	93.557	Aotus_nancymaae
MGP_SPRETEiJ_G0015563	Rc3h1	100	92.171	ENSBTAG00000052708	RC3H1	100	92.616	Bos_taurus
MGP_SPRETEiJ_G0015563	Rc3h1	100	92.939	ENSCJAG00000009106	RC3H1	100	93.469	Callithrix_jacchus
MGP_SPRETEiJ_G0015563	Rc3h1	100	93.021	ENSCAFG00000014434	RC3H1	100	93.463	Canis_familiaris
MGP_SPRETEiJ_G0015563	Rc3h1	100	92.939	ENSCAFG00020017112	RC3H1	99	97.978	Canis_lupus_dingo
MGP_SPRETEiJ_G0015563	Rc3h1	100	92.520	ENSCHIG00000002873	RC3H1	100	92.965	Capra_hircus
MGP_SPRETEiJ_G0015563	Rc3h1	99	91.608	ENSTSYG00000003913	RC3H1	99	91.961	Carlito_syrichta
MGP_SPRETEiJ_G0015563	Rc3h1	100	89.311	ENSCPOG00000004349	RC3H1	100	89.311	Cavia_porcellus
MGP_SPRETEiJ_G0015563	Rc3h1	100	91.439	ENSCCAG00000025652	RC3H1	100	91.968	Cebus_capucinus
MGP_SPRETEiJ_G0015563	Rc3h1	100	93.116	ENSCATG00000033497	RC3H1	100	93.557	Cercocebus_atys
MGP_SPRETEiJ_G0015563	Rc3h1	100	91.615	ENSCLAG00000011267	RC3H1	100	91.968	Chinchilla_lanigera
MGP_SPRETEiJ_G0015563	Rc3h1	96	93.278	ENSCSAG00000011823	RC3H1	85	93.738	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0015563	Rc3h1	100	87.357	ENSCPBG00000014670	RC3H1	100	87.094	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0015563	Rc3h1	100	93.122	ENSCANG00000032120	RC3H1	100	93.563	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0015563	Rc3h1	100	95.575	ENSCGRG00001020812	Rc3h1	100	95.575	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0015563	Rc3h1	100	95.575	ENSCGRG00000011952	Rc3h1	100	95.575	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0015563	Rc3h1	55	90.000	ENSDNOG00000011494	RC3H1	99	90.806	Dasypus_novemcinctus
MGP_SPRETEiJ_G0015563	Rc3h1	100	92.580	ENSDORG00000004855	Rc3h1	100	92.491	Dipodomys_ordii
MGP_SPRETEiJ_G0015563	Rc3h1	82	93.878	ENSETEG00000012064	RC3H1	87	93.878	Echinops_telfairi
MGP_SPRETEiJ_G0015563	Rc3h1	100	92.164	ENSEASG00005017000	RC3H1	100	92.520	Equus_asinus_asinus
MGP_SPRETEiJ_G0015563	Rc3h1	100	91.986	ENSECAG00000021208	RC3H1	100	92.342	Equus_caballus
MGP_SPRETEiJ_G0015563	Rc3h1	89	81.818	ENSEEUG00000014861	RC3H1	93	81.818	Erinaceus_europaeus
MGP_SPRETEiJ_G0015563	Rc3h1	100	93.116	ENSFCAG00000014924	RC3H1	100	93.557	Felis_catus
MGP_SPRETEiJ_G0015563	Rc3h1	100	85.039	ENSFALG00000002947	RC3H1	100	85.039	Ficedula_albicollis
MGP_SPRETEiJ_G0015563	Rc3h1	100	92.056	ENSFDAG00000013303	RC3H1	100	92.321	Fukomys_damarensis
MGP_SPRETEiJ_G0015563	Rc3h1	100	85.651	ENSGALG00000004587	RC3H1	100	85.651	Gallus_gallus
MGP_SPRETEiJ_G0015563	Rc3h1	100	86.472	ENSGAGG00000018194	RC3H1	100	86.472	Gopherus_agassizii
MGP_SPRETEiJ_G0015563	Rc3h1	100	86.456	ENSGGOG00000005735	RC3H1	100	86.895	Gorilla_gorilla
MGP_SPRETEiJ_G0015563	Rc3h1	88	86.604	ENSHGLG00000004183	-	100	86.604	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0015563	Rc3h1	100	91.262	ENSHGLG00100008577	RC3H1	100	91.615	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0015563	Rc3h1	100	92.668	ENSSTOG00000016033	RC3H1	100	93.110	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0015563	Rc3h1	100	92.661	ENSJJAG00000018915	Rc3h1	100	92.573	Jaculus_jaculus
MGP_SPRETEiJ_G0015563	Rc3h1	100	73.932	ENSLACG00000016186	RC3H1	100	77.941	Latimeria_chalumnae
MGP_SPRETEiJ_G0015563	Rc3h1	97	93.254	ENSLAFG00000004367	RC3H1	100	93.710	Loxodonta_africana
MGP_SPRETEiJ_G0015563	Rc3h1	100	93.027	ENSMFAG00000033725	RC3H1	100	93.469	Macaca_fascicularis
MGP_SPRETEiJ_G0015563	Rc3h1	100	93.116	ENSMMUG00000000630	RC3H1	100	93.557	Macaca_mulatta
MGP_SPRETEiJ_G0015563	Rc3h1	100	93.116	ENSMNEG00000035968	RC3H1	100	93.557	Macaca_nemestrina
MGP_SPRETEiJ_G0015563	Rc3h1	100	93.027	ENSMLEG00000037455	RC3H1	100	93.469	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0015563	Rc3h1	97	96.061	ENSMAUG00000020864	Rc3h1	100	96.061	Mesocricetus_auratus
MGP_SPRETEiJ_G0015563	Rc3h1	100	92.933	ENSMICG00000003000	RC3H1	100	93.375	Microcebus_murinus
MGP_SPRETEiJ_G0015563	Rc3h1	93	95.252	ENSMOCG00000016587	Rc3h1	98	95.252	Microtus_ochrogaster
MGP_SPRETEiJ_G0015563	Rc3h1	100	89.242	ENSMODG00000004289	RC3H1	100	89.330	Monodelphis_domestica
MGP_SPRETEiJ_G0015563	Rc3h1	100	98.761	MGP_CAROLIEiJ_G0014756	Rc3h1	100	98.761	Mus_caroli
MGP_SPRETEiJ_G0015563	Rc3h1	100	99.469	ENSMUSG00000040423	Rc3h1	100	99.469	Mus_musculus
MGP_SPRETEiJ_G0015563	Rc3h1	100	98.407	MGP_PahariEiJ_G0027992	Rc3h1	100	98.407	Mus_pahari
MGP_SPRETEiJ_G0015563	Rc3h1	100	93.198	ENSMPUG00000004747	RC3H1	100	93.198	Mustela_putorius_furo
MGP_SPRETEiJ_G0015563	Rc3h1	100	91.777	ENSMLUG00000011127	RC3H1	100	92.219	Myotis_lucifugus
MGP_SPRETEiJ_G0015563	Rc3h1	100	95.133	ENSNGAG00000011135	Rc3h1	100	95.133	Nannospalax_galili
MGP_SPRETEiJ_G0015563	Rc3h1	100	93.116	ENSNLEG00000015327	RC3H1	100	93.557	Nomascus_leucogenys
MGP_SPRETEiJ_G0015563	Rc3h1	99	79.912	ENSOPRG00000013068	RC3H1	99	79.912	Ochotona_princeps
MGP_SPRETEiJ_G0015563	Rc3h1	100	92.233	ENSODEG00000014185	RC3H1	100	92.233	Octodon_degus
MGP_SPRETEiJ_G0015563	Rc3h1	100	88.384	ENSOANG00000000924	RC3H1	100	88.559	Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0015563	Rc3h1	99	92.473	ENSOCUG00000004930	RC3H1	98	92.921	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0015563	Rc3h1	100	85.802	ENSOGAG00000004044	RC3H1	100	86.155	Otolemur_garnettii
MGP_SPRETEiJ_G0015563	Rc3h1	100	91.930	ENSOARG00000013011	RC3H1	100	92.368	Ovis_aries
MGP_SPRETEiJ_G0015563	Rc3h1	100	93.034	ENSPPAG00000039253	RC3H1	100	93.474	Pan_paniscus
MGP_SPRETEiJ_G0015563	Rc3h1	100	93.143	ENSPPRG00000009007	RC3H1	100	93.589	Panthera_pardus
MGP_SPRETEiJ_G0015563	Rc3h1	100	92.700	ENSPTIG00000015326	RC3H1	100	93.228	Panthera_tigris_altaica
MGP_SPRETEiJ_G0015563	Rc3h1	100	93.034	ENSPTRG00000001702	RC3H1	100	93.474	Pan_troglodytes
MGP_SPRETEiJ_G0015563	Rc3h1	100	93.027	ENSPANG00000008886	RC3H1	100	93.469	Papio_anubis
MGP_SPRETEiJ_G0015563	Rc3h1	100	87.710	ENSPSIG00000016181	RC3H1	100	87.975	Pelodiscus_sinensis
MGP_SPRETEiJ_G0015563	Rc3h1	100	95.133	ENSPEMG00000011966	Rc3h1	100	95.221	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0015563	Rc3h1	70	92.776	ENSPCIG00000002058	RC3H1	95	98.206	Phascolarctos_cinereus
MGP_SPRETEiJ_G0015563	Rc3h1	100	90.468	ENSPPYG00000000490	RC3H1	98	93.919	Pongo_abelii
MGP_SPRETEiJ_G0015563	Rc3h1	81	97.368	ENSPCAG00000010775	RC3H1	87	97.368	Procavia_capensis
MGP_SPRETEiJ_G0015563	Rc3h1	83	91.444	ENSPCOG00000021795	RC3H1	96	91.979	Propithecus_coquereli
MGP_SPRETEiJ_G0015563	Rc3h1	100	84.452	ENSPVAG00000007593	RC3H1	100	84.806	Pteropus_vampyrus
MGP_SPRETEiJ_G0015563	Rc3h1	97	61.408	ENSPNAG00000023439	rc3h1a	95	90.766	Pygocentrus_nattereri
MGP_SPRETEiJ_G0015563	Rc3h1	100	93.210	ENSRBIG00000037743	RC3H1	100	93.651	Rhinopithecus_bieti
MGP_SPRETEiJ_G0015563	Rc3h1	100	93.204	ENSRROG00000036546	RC3H1	100	93.645	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0015563	Rc3h1	93	88.061	ENSSBOG00000010664	RC3H1	100	88.539	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0015563	Rc3h1	100	88.546	ENSSHAG00000007589	RC3H1	100	88.634	Sarcophilus_harrisii
MGP_SPRETEiJ_G0015563	Rc3h1	87	86.712	ENSSARG00000004660	RC3H1	86	86.712	Sorex_araneus
MGP_SPRETEiJ_G0015563	Rc3h1	100	81.770	ENSSPUG00000018472	RC3H1	100	82.281	Sphenodon_punctatus
MGP_SPRETEiJ_G0015563	Rc3h1	100	93.375	ENSSSCG00000015498	RC3H1	100	93.816	Sus_scrofa
MGP_SPRETEiJ_G0015563	Rc3h1	100	85.664	ENSTGUG00000004090	RC3H1	100	85.664	Taeniopygia_guttata
MGP_SPRETEiJ_G0015563	Rc3h1	89	94.823	ENSTBEG00000005015	RC3H1	89	94.823	Tupaia_belangeri
MGP_SPRETEiJ_G0015563	Rc3h1	100	92.247	ENSTTRG00000008572	RC3H1	100	92.687	Tursiops_truncatus
MGP_SPRETEiJ_G0015563	Rc3h1	100	93.021	ENSUAMG00000019525	RC3H1	100	93.021	Ursus_americanus
MGP_SPRETEiJ_G0015563	Rc3h1	100	93.469	ENSUMAG00000020087	RC3H1	100	93.469	Ursus_maritimus
MGP_SPRETEiJ_G0015563	Rc3h1	91	98.423	ENSVPAG00000002591	RC3H1	92	98.423	Vicugna_pacos
MGP_SPRETEiJ_G0015563	Rc3h1	100	92.694	ENSVVUG00000014201	RC3H1	100	93.134	Vulpes_vulpes
MGP_SPRETEiJ_G0015563	Rc3h1	100	77.304	ENSXETG00000020030	rc3h1	100	77.217	Xenopus_tropicalis