EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0016505 (Gene tree)
Gene ID: -
Gene Symbol: Prdm4
Alias: 1700031E19Rik|2810470D21Rik|SC-1|SC1
Full Name: PR domain containing 4
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Minus strand
Length: 26198 bases
Position: chr10:84804884-84831081
Accession: 1920093
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0025522	zf-C2H2	PF00096.26	3.5e-20	1	2
MGP_SPRETEiJ_P0025522	zf-C2H2	PF00096.26	3.5e-20	2	2
MGP_SPRETEiJ_P0025522	zf-met	PF12874.7	0.00021	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0025522	-	3932	-	MGP_SPRETEiJ_P0025522	804 (aa)	-	-
MGP_SPRETEiJ_T0025521	-	3807	-	MGP_SPRETEiJ_P0025521	787 (aa)	-	-
MGP_SPRETEiJ_T0025520	-	3811	-	MGP_SPRETEiJ_P0025520	797 (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0016505's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0016505's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_SPRETEiJ_G0016505	Prdm4	55	44.767	MGP_SPRETEiJ_G0022052	Zfp945	79	45.122

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0016505	Prdm4	100	95.299	ENSG00000110851	PRDM4	100	94.624	Homo_sapiens
MGP_SPRETEiJ_G0016505	Prdm4	100	94.924	ENSAMEG00000016174	PRDM4	99	94.862	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0016505	Prdm4	100	86.826	ENSAPLG00000009846	PRDM4	99	86.324	Anas_platyrhynchos
MGP_SPRETEiJ_G0016505	Prdm4	100	95.044	ENSANAG00000024800	PRDM4	99	93.977	Aotus_nancymaae
MGP_SPRETEiJ_G0016505	Prdm4	100	95.044	ENSBTAG00000012999	PRDM4	99	94.981	Bos_taurus
MGP_SPRETEiJ_G0016505	Prdm4	100	94.663	ENSCJAG00000015261	PRDM4	99	94.605	Callithrix_jacchus
MGP_SPRETEiJ_G0016505	Prdm4	100	94.917	ENSCAFG00000001788	PRDM4	99	94.856	Canis_familiaris
MGP_SPRETEiJ_G0016505	Prdm4	100	94.917	ENSCAFG00020004916	PRDM4	99	94.856	Canis_lupus_dingo
MGP_SPRETEiJ_G0016505	Prdm4	100	94.917	ENSCHIG00000019409	PRDM4	99	94.856	Capra_hircus
MGP_SPRETEiJ_G0016505	Prdm4	100	95.172	ENSTSYG00000009248	PRDM4	99	95.107	Carlito_syrichta
MGP_SPRETEiJ_G0016505	Prdm4	100	88.861	ENSCAPG00000013937	PRDM4	99	88.861	Cavia_aperea
MGP_SPRETEiJ_G0016505	Prdm4	100	88.323	ENSCPOG00000022385	PRDM4	100	88.323	Cavia_porcellus
MGP_SPRETEiJ_G0016505	Prdm4	100	95.172	ENSCCAG00000036033	PRDM4	99	95.107	Cebus_capucinus
MGP_SPRETEiJ_G0016505	Prdm4	100	94.917	ENSCATG00000044797	PRDM4	99	94.856	Cercocebus_atys
MGP_SPRETEiJ_G0016505	Prdm4	100	90.796	ENSCLAG00000007545	PRDM4	100	91.045	Chinchilla_lanigera
MGP_SPRETEiJ_G0016505	Prdm4	100	95.172	ENSCSAG00000002896	PRDM4	99	95.107	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0016505	Prdm4	71	95.833	ENSCHOG00000001744	PRDM4	85	95.283	Choloepus_hoffmanni
MGP_SPRETEiJ_G0016505	Prdm4	100	87.802	ENSCPBG00000023187	PRDM4	100	86.951	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0016505	Prdm4	100	95.044	ENSCANG00000021804	PRDM4	99	94.981	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0016505	Prdm4	100	95.274	ENSCGRG00001015102	-	100	94.776	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0016505	Prdm4	98	94.323	ENSCGRG00000004044	-	100	94.581	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0016505	Prdm4	100	94.536	ENSDNOG00000032478	PRDM4	99	94.813	Dasypus_novemcinctus
MGP_SPRETEiJ_G0016505	Prdm4	100	80.427	ENSDORG00000015081	-	100	91.262	Dipodomys_ordii
MGP_SPRETEiJ_G0016505	Prdm4	94	45.570	ENSEBUG00000003775	prdm4	99	45.920	Eptatretus_burgeri
MGP_SPRETEiJ_G0016505	Prdm4	100	95.553	ENSECAG00000015423	PRDM4	99	95.610	Equus_caballus
MGP_SPRETEiJ_G0016505	Prdm4	95	91.744	ENSEEUG00000006569	PRDM4	99	91.212	Erinaceus_europaeus
MGP_SPRETEiJ_G0016505	Prdm4	99	60.267	ENSELUG00000015265	prdm4	99	60.146	Esox_lucius
MGP_SPRETEiJ_G0016505	Prdm4	100	95.172	ENSFCAG00000022478	PRDM4	99	95.107	Felis_catus
MGP_SPRETEiJ_G0016505	Prdm4	100	87.202	ENSFALG00000013342	PRDM4	100	86.826	Ficedula_albicollis
MGP_SPRETEiJ_G0016505	Prdm4	100	86.859	ENSGALG00000012619	PRDM4	99	86.358	Gallus_gallus
MGP_SPRETEiJ_G0016505	Prdm4	100	87.039	ENSGAGG00000002763	PRDM4	95	86.575	Gopherus_agassizii
MGP_SPRETEiJ_G0016505	Prdm4	100	95.172	ENSGGOG00000001244	PRDM4	99	95.107	Gorilla_gorilla
MGP_SPRETEiJ_G0016505	Prdm4	100	91.614	ENSHGLG00000004590	PRDM4	98	91.468	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0016505	Prdm4	100	90.932	ENSHGLG00100007464	PRDM4	100	90.807	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0016505	Prdm4	95	61.269	ENSIPUG00000024162	prdm4	93	61.358	Ictalurus_punctatus
MGP_SPRETEiJ_G0016505	Prdm4	100	94.790	ENSSTOG00000016168	PRDM4	99	94.730	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0016505	Prdm4	82	93.767	ENSJJAG00000022448	-	95	93.767	Jaculus_jaculus
MGP_SPRETEiJ_G0016505	Prdm4	100	71.287	ENSLACG00000007452	PRDM4	99	72.277	Latimeria_chalumnae
MGP_SPRETEiJ_G0016505	Prdm4	79	42.480	ENSLOCG00000017092	prdm4	100	53.247	Lepisosteus_oculatus
MGP_SPRETEiJ_G0016505	Prdm4	98	94.924	ENSLAFG00000001483	PRDM4	100	94.924	Loxodonta_africana
MGP_SPRETEiJ_G0016505	Prdm4	100	95.299	ENSMFAG00000041862	PRDM4	99	95.232	Macaca_fascicularis
MGP_SPRETEiJ_G0016505	Prdm4	100	95.299	ENSMMUG00000015550	PRDM4	99	95.232	Macaca_mulatta
MGP_SPRETEiJ_G0016505	Prdm4	100	95.044	ENSMNEG00000032319	PRDM4	99	94.981	Macaca_nemestrina
MGP_SPRETEiJ_G0016505	Prdm4	100	95.172	ENSMLEG00000039607	PRDM4	99	95.107	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0016505	Prdm4	100	78.875	ENSMGAG00000012815	PRDM4	100	78.375	Meleagris_gallopavo
MGP_SPRETEiJ_G0016505	Prdm4	100	94.282	ENSMICG00000007807	PRDM4	99	94.290	Microcebus_murinus
MGP_SPRETEiJ_G0016505	Prdm4	100	94.856	ENSMOCG00000000753	Prdm4	99	94.354	Microtus_ochrogaster
MGP_SPRETEiJ_G0016505	Prdm4	100	99.247	ENSMUSG00000035529	Prdm4	100	99.247	Mus_musculus
MGP_SPRETEiJ_G0016505	Prdm4	100	98.369	MGP_PahariEiJ_G0031398	Prdm4	100	98.369	Mus_pahari
MGP_SPRETEiJ_G0016505	Prdm4	100	89.014	ENSMPUG00000012238	PRDM4	99	88.265	Mustela_putorius_furo
MGP_SPRETEiJ_G0016505	Prdm4	100	94.663	ENSMLUG00000000767	PRDM4	99	94.605	Myotis_lucifugus
MGP_SPRETEiJ_G0016505	Prdm4	100	95.734	ENSNGAG00000018627	Prdm4	100	95.734	Nannospalax_galili
MGP_SPRETEiJ_G0016505	Prdm4	100	95.172	ENSNLEG00000006748	PRDM4	99	95.107	Nomascus_leucogenys
MGP_SPRETEiJ_G0016505	Prdm4	89	87.089	ENSMEUG00000004495	PRDM4	89	87.089	Notamacropus_eugenii
MGP_SPRETEiJ_G0016505	Prdm4	89	94.940	ENSOPRG00000010192	PRDM4	89	94.940	Ochotona_princeps
MGP_SPRETEiJ_G0016505	Prdm4	100	88.582	ENSODEG00000014750	PRDM4	99	88.457	Octodon_degus
MGP_SPRETEiJ_G0016505	Prdm4	100	88.833	ENSOANG00000005526	PRDM4	99	88.833	Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0016505	Prdm4	94	95.210	ENSOCUG00000012859	PRDM4	96	95.136	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0016505	Prdm4	100	95.044	ENSOGAG00000011945	PRDM4	100	94.730	Otolemur_garnettii
MGP_SPRETEiJ_G0016505	Prdm4	100	95.044	ENSOARG00000017955	PRDM4	99	94.981	Ovis_aries
MGP_SPRETEiJ_G0016505	Prdm4	100	95.553	ENSPPAG00000038438	PRDM4	99	95.483	Pan_paniscus
MGP_SPRETEiJ_G0016505	Prdm4	100	95.172	ENSPPRG00000004144	PRDM4	99	95.107	Panthera_pardus
MGP_SPRETEiJ_G0016505	Prdm4	100	95.172	ENSPTIG00000005847	PRDM4	99	95.107	Panthera_tigris_altaica
MGP_SPRETEiJ_G0016505	Prdm4	100	95.426	ENSPTRG00000005400	PRDM4	99	95.358	Pan_troglodytes
MGP_SPRETEiJ_G0016505	Prdm4	100	95.299	ENSPANG00000022084	PRDM4	99	95.232	Papio_anubis
MGP_SPRETEiJ_G0016505	Prdm4	99	59.264	ENSPKIG00000000875	prdm4	99	59.857	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0016505	Prdm4	92	80.871	ENSPSIG00000012066	PRDM4	100	80.871	Pelodiscus_sinensis
MGP_SPRETEiJ_G0016505	Prdm4	100	96.738	ENSPEMG00000014598	Prdm4	100	96.738	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0016505	Prdm4	100	87.125	ENSPCIG00000009471	PRDM4	99	87.125	Phascolarctos_cinereus
MGP_SPRETEiJ_G0016505	Prdm4	100	95.172	ENSPPYG00000004913	PRDM4	99	95.107	Pongo_abelii
MGP_SPRETEiJ_G0016505	Prdm4	83	94.175	ENSPCAG00000009987	PRDM4	83	94.175	Procavia_capensis
MGP_SPRETEiJ_G0016505	Prdm4	100	94.409	ENSPCOG00000021060	PRDM4	99	94.354	Propithecus_coquereli
MGP_SPRETEiJ_G0016505	Prdm4	100	94.543	ENSPVAG00000001596	PRDM4	99	94.737	Pteropus_vampyrus
MGP_SPRETEiJ_G0016505	Prdm4	100	96.742	ENSRNOG00000004962	Prdm4	100	96.742	Rattus_norvegicus
MGP_SPRETEiJ_G0016505	Prdm4	100	95.044	ENSRBIG00000035488	PRDM4	99	94.981	Rhinopithecus_bieti
MGP_SPRETEiJ_G0016505	Prdm4	100	95.172	ENSRROG00000012779	PRDM4	99	95.107	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0016505	Prdm4	100	95.172	ENSSBOG00000000403	PRDM4	99	95.107	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0016505	Prdm4	99	63.502	ENSSFOG00015023358	prdm4	98	63.502	Scleropages_formosus
MGP_SPRETEiJ_G0016505	Prdm4	100	95.044	ENSSSCG00000000160	PRDM4	99	94.981	Sus_scrofa
MGP_SPRETEiJ_G0016505	Prdm4	100	87.202	ENSTGUG00000010962	-	99	86.826	Taeniopygia_guttata
MGP_SPRETEiJ_G0016505	Prdm4	74	88.737	ENSTBEG00000001732	PRDM4	84	88.737	Tupaia_belangeri
MGP_SPRETEiJ_G0016505	Prdm4	100	95.172	ENSTTRG00000011056	PRDM4	99	95.107	Tursiops_truncatus
MGP_SPRETEiJ_G0016505	Prdm4	100	95.044	ENSUAMG00000022796	PRDM4	99	94.981	Ursus_americanus
MGP_SPRETEiJ_G0016505	Prdm4	100	95.044	ENSUMAG00000017231	PRDM4	99	94.981	Ursus_maritimus
MGP_SPRETEiJ_G0016505	Prdm4	100	94.917	ENSVPAG00000002215	PRDM4	100	94.856	Vicugna_pacos
MGP_SPRETEiJ_G0016505	Prdm4	100	94.917	ENSVVUG00000023397	PRDM4	99	94.856	Vulpes_vulpes