EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0016911 (Gene tree)
Gene ID: -
Gene Symbol: Ddx56
Alias: 2600001H07Rik|D11Ertd619e|NOH61
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 56
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Minus strand
Length: 8870 bases
Position: chr11:3346948-3355817
Accession: 1277172
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0026922	ResIII	PF04851.15	9.6e-07	1	1
MGP_SPRETEiJ_P0026922	DEAD	PF00270.29	7e-40	1	1
MGP_SPRETEiJ_P0026924	DEAD	PF00270.29	5.9e-33	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0026924	-	764	-	MGP_SPRETEiJ_P0026924	237 (aa)	-	UPI00004704CA
MGP_SPRETEiJ_T0026925	-	625	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0026922	-	1951	-	MGP_SPRETEiJ_P0026922	546 (aa)	-	UPI0000001975
MGP_SPRETEiJ_T0026923	-	529	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0016911's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0016911's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_SPRETEiJ_G0016911	Ddx56	61	32.051	MGP_SPRETEiJ_G0032396	Ddx39	74	34.969
MGP_SPRETEiJ_G0016911	Ddx56	98	33.065	MGP_SPRETEiJ_G0025620	Ddx27	53	31.019
MGP_SPRETEiJ_G0016911	Ddx56	80	33.971	MGP_SPRETEiJ_G0017733	Ddx52	61	31.095
MGP_SPRETEiJ_G0016911	Ddx56	51	31.884	MGP_SPRETEiJ_G0032686	-	60	33.793
MGP_SPRETEiJ_G0016911	Ddx56	99	35.887	MGP_SPRETEiJ_G0030034	Ddx47	86	38.889
MGP_SPRETEiJ_G0016911	Ddx56	97	30.328	MGP_SPRETEiJ_G0021508	Eif4a2	63	30.736
MGP_SPRETEiJ_G0016911	Ddx56	75	46.875	MGP_SPRETEiJ_G0018898	Ddx24	51	46.875
MGP_SPRETEiJ_G0016911	Ddx56	66	30.789	MGP_SPRETEiJ_G0015828	D1Pas1	52	30.159
MGP_SPRETEiJ_G0016911	Ddx56	92	32.906	MGP_SPRETEiJ_G0015336	Ddx18	53	30.287
MGP_SPRETEiJ_G0016911	Ddx56	82	50.000	MGP_SPRETEiJ_G0018464	Ddx1	53	50.847

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0016911	Ddx56	100	90.859	ENSG00000136271	DDX56	100	93.514	Homo_sapiens
MGP_SPRETEiJ_G0016911	Ddx56	98	67.339	ENSAPOG00000017113	ddx56	98	63.357	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0016911	Ddx56	100	86.996	ENSAMEG00000017711	DDX56	100	86.996	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0016911	Ddx56	92	58.546	ENSACIG00000013747	ddx56	98	67.403	Amphilophus_citrinellus
MGP_SPRETEiJ_G0016911	Ddx56	96	66.393	ENSAOCG00000018059	ddx56	93	65.800	Amphiprion_ocellaris
MGP_SPRETEiJ_G0016911	Ddx56	96	66.393	ENSAOCG00000015447	-	87	65.708	Amphiprion_ocellaris
MGP_SPRETEiJ_G0016911	Ddx56	96	66.393	ENSAPEG00000007267	ddx56	99	63.082	Amphiprion_percula
MGP_SPRETEiJ_G0016911	Ddx56	98	66.935	ENSATEG00000005279	ddx56	98	63.884	Anabas_testudineus
MGP_SPRETEiJ_G0016911	Ddx56	98	67.068	ENSACLG00000020113	ddx56	98	64.557	Astatotilapia_calliptera
MGP_SPRETEiJ_G0016911	Ddx56	97	64.516	ENSAMXG00000019357	ddx56	99	59.857	Astyanax_mexicanus
MGP_SPRETEiJ_G0016911	Ddx56	100	89.560	ENSBTAG00000010602	DDX56	100	89.560	Bos_taurus
MGP_SPRETEiJ_G0016911	Ddx56	96	40.721	WBGene00016073	C24H12.4	86	40.721	Caenorhabditis_elegans
MGP_SPRETEiJ_G0016911	Ddx56	100	90.311	ENSCJAG00000012233	DDX56	100	90.311	Callithrix_jacchus
MGP_SPRETEiJ_G0016911	Ddx56	82	85.650	ENSCAFG00000029295	DDX56	100	85.650	Canis_familiaris
MGP_SPRETEiJ_G0016911	Ddx56	100	83.516	ENSCAFG00020019695	DDX56	100	83.516	Canis_lupus_dingo
MGP_SPRETEiJ_G0016911	Ddx56	100	89.560	ENSCHIG00000014261	DDX56	100	89.560	Capra_hircus
MGP_SPRETEiJ_G0016911	Ddx56	100	89.397	ENSTSYG00000008048	DDX56	100	89.945	Carlito_syrichta
MGP_SPRETEiJ_G0016911	Ddx56	86	87.315	ENSCAPG00000006286	DDX56	100	87.315	Cavia_aperea
MGP_SPRETEiJ_G0016911	Ddx56	100	87.751	ENSCPOG00000003359	DDX56	100	87.751	Cavia_porcellus
MGP_SPRETEiJ_G0016911	Ddx56	100	89.762	ENSCCAG00000025303	DDX56	100	90.311	Cebus_capucinus
MGP_SPRETEiJ_G0016911	Ddx56	100	90.659	ENSCATG00000039389	DDX56	100	90.659	Cercocebus_atys
MGP_SPRETEiJ_G0016911	Ddx56	100	89.377	ENSCLAG00000007666	DDX56	100	89.377	Chinchilla_lanigera
MGP_SPRETEiJ_G0016911	Ddx56	100	90.676	ENSCSAG00000015636	DDX56	100	90.676	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0016911	Ddx56	98	68.364	ENSCPBG00000024556	DDX56	98	68.364	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0016911	Ddx56	98	54.941	ENSCING00000005185	-	98	55.773	Ciona_intestinalis
MGP_SPRETEiJ_G0016911	Ddx56	99	54.878	ENSCSAVG00000011266	-	99	54.348	Ciona_savignyi
MGP_SPRETEiJ_G0016911	Ddx56	100	90.494	ENSCANG00000028187	DDX56	100	90.494	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0016911	Ddx56	100	93.407	ENSCGRG00001019019	Ddx56	100	93.407	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0016911	Ddx56	100	93.407	ENSCGRG00000011870	Ddx56	100	93.407	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0016911	Ddx56	98	67.742	ENSCSEG00000008368	ddx56	99	63.262	Cynoglossus_semilaevis
MGP_SPRETEiJ_G0016911	Ddx56	98	68.548	ENSCVAG00000006499	ddx56	99	64.195	Cyprinodon_variegatus
MGP_SPRETEiJ_G0016911	Ddx56	99	64.542	ENSDARG00000020913	ddx56	99	63.148	Danio_rerio
MGP_SPRETEiJ_G0016911	Ddx56	86	86.441	ENSDNOG00000036526	DDX56	99	86.441	Dasypus_novemcinctus
MGP_SPRETEiJ_G0016911	Ddx56	70	85.870	ENSDORG00000026173	-	100	94.595	Dipodomys_ordii
MGP_SPRETEiJ_G0016911	Ddx56	98	47.200	FBgn0001565	Hlc	94	48.037	Drosophila_melanogaster
MGP_SPRETEiJ_G0016911	Ddx56	94	72.614	ENSETEG00000002969	-	83	78.325	Echinops_telfairi
MGP_SPRETEiJ_G0016911	Ddx56	87	59.579	ENSETEG00000019559	-	100	58.737	Echinops_telfairi
MGP_SPRETEiJ_G0016911	Ddx56	100	58.893	ENSEBUG00000009986	ddx56	99	58.559	Eptatretus_burgeri
MGP_SPRETEiJ_G0016911	Ddx56	100	89.377	ENSEASG00005017795	DDX56	100	89.377	Equus_asinus_asinus
MGP_SPRETEiJ_G0016911	Ddx56	100	89.194	ENSECAG00000019897	DDX56	100	89.194	Equus_caballus
MGP_SPRETEiJ_G0016911	Ddx56	86	87.712	ENSEEUG00000004849	DDX56	100	87.712	Erinaceus_europaeus
MGP_SPRETEiJ_G0016911	Ddx56	97	67.480	ENSELUG00000004150	ddx56	97	65.867	Esox_lucius
MGP_SPRETEiJ_G0016911	Ddx56	99	86.789	ENSFCAG00000010261	DDX56	99	86.972	Felis_catus
MGP_SPRETEiJ_G0016911	Ddx56	100	88.645	ENSFDAG00000007128	DDX56	100	88.645	Fukomys_damarensis
MGP_SPRETEiJ_G0016911	Ddx56	97	68.699	ENSFHEG00000018008	ddx56	95	67.273	Fundulus_heteroclitus
MGP_SPRETEiJ_G0016911	Ddx56	98	67.742	ENSGAFG00000006906	ddx56	98	61.029	Gambusia_affinis
MGP_SPRETEiJ_G0016911	Ddx56	94	71.401	ENSGAGG00000006789	DDX56	91	71.401	Gopherus_agassizii
MGP_SPRETEiJ_G0016911	Ddx56	100	90.859	ENSGGOG00000012031	DDX56	100	90.859	Gorilla_gorilla
MGP_SPRETEiJ_G0016911	Ddx56	98	67.068	ENSHBUG00000015246	ddx56	93	62.115	Haplochromis_burtoni
MGP_SPRETEiJ_G0016911	Ddx56	100	89.560	ENSHGLG00000017271	DDX56	100	89.560	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0016911	Ddx56	100	89.560	ENSHGLG00100015731	DDX56	100	89.560	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0016911	Ddx56	98	67.339	ENSHCOG00000001685	ddx56	97	63.333	Hippocampus_comes
MGP_SPRETEiJ_G0016911	Ddx56	99	64.542	ENSIPUG00000006602	ddx56	98	61.388	Ictalurus_punctatus
MGP_SPRETEiJ_G0016911	Ddx56	100	89.194	ENSSTOG00000000464	DDX56	100	89.194	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0016911	Ddx56	99	90.590	ENSJJAG00000014269	Ddx56	100	90.590	Jaculus_jaculus
MGP_SPRETEiJ_G0016911	Ddx56	97	67.886	ENSKMAG00000016611	ddx56	98	63.423	Kryptolebias_marmoratus
MGP_SPRETEiJ_G0016911	Ddx56	96	67.213	ENSLBEG00000026281	ddx56	98	62.664	Labrus_bergylta
MGP_SPRETEiJ_G0016911	Ddx56	97	66.298	ENSLACG00000015551	DDX56	97	66.667	Latimeria_chalumnae
MGP_SPRETEiJ_G0016911	Ddx56	97	68.826	ENSLOCG00000015185	ddx56	99	63.458	Lepisosteus_oculatus
MGP_SPRETEiJ_G0016911	Ddx56	99	88.192	ENSLAFG00000018206	DDX56	99	88.192	Loxodonta_africana
MGP_SPRETEiJ_G0016911	Ddx56	100	90.842	ENSMFAG00000041001	DDX56	100	90.842	Macaca_fascicularis
MGP_SPRETEiJ_G0016911	Ddx56	100	90.659	ENSMMUG00000002645	DDX56	100	90.659	Macaca_mulatta
MGP_SPRETEiJ_G0016911	Ddx56	100	91.026	ENSMNEG00000028492	DDX56	100	91.026	Macaca_nemestrina
MGP_SPRETEiJ_G0016911	Ddx56	100	90.659	ENSMLEG00000043591	DDX56	100	90.659	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0016911	Ddx56	96	68.033	ENSMAMG00000007776	ddx56	98	64.845	Mastacembelus_armatus
MGP_SPRETEiJ_G0016911	Ddx56	98	67.068	ENSMZEG00005009813	ddx56	98	64.557	Maylandia_zebra
MGP_SPRETEiJ_G0016911	Ddx56	100	90.859	ENSMICG00000005550	DDX56	100	90.859	Microcebus_murinus
MGP_SPRETEiJ_G0016911	Ddx56	100	93.956	ENSMOCG00000016782	Ddx56	100	93.956	Microtus_ochrogaster
MGP_SPRETEiJ_G0016911	Ddx56	97	67.073	ENSMMOG00000009654	ddx56	96	65.759	Mola_mola
MGP_SPRETEiJ_G0016911	Ddx56	100	74.503	ENSMODG00000016137	DDX56	100	74.503	Monodelphis_domestica
MGP_SPRETEiJ_G0016911	Ddx56	98	66.932	ENSMALG00000016910	ddx56	99	63.807	Monopterus_albus
MGP_SPRETEiJ_G0016911	Ddx56	100	99.156	MGP_CAROLIEiJ_G0016069	Ddx56	100	99.156	Mus_caroli
MGP_SPRETEiJ_G0016911	Ddx56	100	100.000	ENSMUSG00000004393	Ddx56	100	100.000	Mus_musculus
MGP_SPRETEiJ_G0016911	Ddx56	100	97.253	MGP_PahariEiJ_G0016822	Ddx56	100	97.881	Mus_pahari
MGP_SPRETEiJ_G0016911	Ddx56	100	86.081	ENSMPUG00000018196	DDX56	88	86.081	Mustela_putorius_furo
MGP_SPRETEiJ_G0016911	Ddx56	100	89.927	ENSMLUG00000003509	DDX56	100	90.110	Myotis_lucifugus
MGP_SPRETEiJ_G0016911	Ddx56	100	90.842	ENSNGAG00000018785	Ddx56	100	90.842	Nannospalax_galili
MGP_SPRETEiJ_G0016911	Ddx56	98	67.068	ENSNBRG00000002656	ddx56	93	63.548	Neolamprologus_brichardi
MGP_SPRETEiJ_G0016911	Ddx56	100	91.225	ENSNLEG00000003816	DDX56	100	91.225	Nomascus_leucogenys
MGP_SPRETEiJ_G0016911	Ddx56	96	79.592	ENSMEUG00000006788	DDX56	100	76.613	Notamacropus_eugenii
MGP_SPRETEiJ_G0016911	Ddx56	100	88.117	ENSOPRG00000000292	-	100	88.117	Ochotona_princeps
MGP_SPRETEiJ_G0016911	Ddx56	96	86.939	ENSODEG00000014807	DDX56	100	92.000	Octodon_degus
MGP_SPRETEiJ_G0016911	Ddx56	98	67.068	ENSONIG00000011509	ddx56	98	65.672	Oreochromis_niloticus
MGP_SPRETEiJ_G0016911	Ddx56	95	67.490	ENSOANG00000015987	-	95	69.608	Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0016911	Ddx56	88	80.973	ENSOANG00000006320	-	100	69.981	Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0016911	Ddx56	100	87.751	ENSOCUG00000022918	DDX56	100	88.483	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0016911	Ddx56	98	66.935	ENSORLG00000001434	ddx56	99	64.337	Oryzias_latipes
MGP_SPRETEiJ_G0016911	Ddx56	98	66.935	ENSORLG00020015718	ddx56	95	64.738	Oryzias_latipes_hni
MGP_SPRETEiJ_G0016911	Ddx56	98	66.935	ENSORLG00015003004	ddx56	95	64.557	Oryzias_latipes_hsok
MGP_SPRETEiJ_G0016911	Ddx56	98	66.935	ENSOMEG00000022072	ddx56	98	64.973	Oryzias_melastigma
MGP_SPRETEiJ_G0016911	Ddx56	100	89.397	ENSOGAG00000009981	DDX56	100	89.397	Otolemur_garnettii
MGP_SPRETEiJ_G0016911	Ddx56	100	89.744	ENSOARG00000015240	DDX56	100	89.744	Ovis_aries
MGP_SPRETEiJ_G0016911	Ddx56	100	73.406	ENSPPAG00000031263	-	100	73.224	Pan_paniscus
MGP_SPRETEiJ_G0016911	Ddx56	100	86.871	ENSPPAG00000029147	DDX56	100	86.871	Pan_paniscus
MGP_SPRETEiJ_G0016911	Ddx56	99	85.714	ENSPPRG00000014594	DDX56	99	86.264	Panthera_pardus
MGP_SPRETEiJ_G0016911	Ddx56	86	84.501	ENSPTIG00000019500	DDX56	92	84.713	Panthera_tigris_altaica
MGP_SPRETEiJ_G0016911	Ddx56	94	75.483	ENSPTRG00000052765	-	100	75.290	Pan_troglodytes
MGP_SPRETEiJ_G0016911	Ddx56	100	90.494	ENSPTRG00000019147	DDX56	100	90.494	Pan_troglodytes
MGP_SPRETEiJ_G0016911	Ddx56	100	90.842	ENSPANG00000002446	DDX56	100	90.842	Papio_anubis
MGP_SPRETEiJ_G0016911	Ddx56	98	66.265	ENSPKIG00000018998	ddx56	98	64.855	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0016911	Ddx56	98	66.265	ENSPMGG00000017421	ddx56	96	66.023	Periophthalmus_magnuspinnatus
MGP_SPRETEiJ_G0016911	Ddx56	96	95.154	ENSPEMG00000018351	-	96	95.154	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0016911	Ddx56	100	82.609	ENSPCIG00000009336	DDX56	100	82.609	Phascolarctos_cinereus
MGP_SPRETEiJ_G0016911	Ddx56	98	68.145	ENSPFOG00000018658	ddx56	99	63.291	Poecilia_formosa
MGP_SPRETEiJ_G0016911	Ddx56	98	68.145	ENSPLAG00000019208	ddx56	99	63.291	Poecilia_latipinna
MGP_SPRETEiJ_G0016911	Ddx56	98	68.145	ENSPMEG00000001775	ddx56	99	62.749	Poecilia_mexicana
MGP_SPRETEiJ_G0016911	Ddx56	98	67.742	ENSPREG00000015142	ddx56	99	63.472	Poecilia_reticulata
MGP_SPRETEiJ_G0016911	Ddx56	100	91.225	ENSPPYG00000017591	DDX56	100	91.225	Pongo_abelii
MGP_SPRETEiJ_G0016911	Ddx56	96	86.907	ENSPCAG00000011499	DDX56	100	86.907	Procavia_capensis
MGP_SPRETEiJ_G0016911	Ddx56	100	90.859	ENSPCOG00000024864	DDX56	100	90.859	Propithecus_coquereli
MGP_SPRETEiJ_G0016911	Ddx56	88	91.163	ENSPVAG00000000791	DDX56	88	91.163	Pteropus_vampyrus
MGP_SPRETEiJ_G0016911	Ddx56	98	66.667	ENSPNYG00000019212	ddx56	98	64.376	Pundamilia_nyererei
MGP_SPRETEiJ_G0016911	Ddx56	98	65.462	ENSPNAG00000025446	ddx56	99	63.011	Pygocentrus_nattereri
MGP_SPRETEiJ_G0016911	Ddx56	100	96.520	ENSRNOG00000004670	Ddx56	100	96.520	Rattus_norvegicus
MGP_SPRETEiJ_G0016911	Ddx56	100	90.676	ENSRBIG00000030140	DDX56	100	90.676	Rhinopithecus_bieti
MGP_SPRETEiJ_G0016911	Ddx56	100	90.311	ENSRROG00000044428	DDX56	100	90.311	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0016911	Ddx56	97	42.440	YLR276C	-	98	42.612	Saccharomyces_cerevisiae
MGP_SPRETEiJ_G0016911	Ddx56	100	90.128	ENSSBOG00000034339	DDX56	100	90.128	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0016911	Ddx56	86	82.664	ENSSHAG00000016615	DDX56	99	82.664	Sarcophilus_harrisii
MGP_SPRETEiJ_G0016911	Ddx56	98	65.693	ENSSFOG00015012795	ddx56	97	65.693	Scleropages_formosus
MGP_SPRETEiJ_G0016911	Ddx56	98	67.742	ENSSMAG00000011280	ddx56	99	64.057	Scophthalmus_maximus
MGP_SPRETEiJ_G0016911	Ddx56	98	67.742	ENSSDUG00000023597	ddx56	98	63.784	Seriola_dumerili
MGP_SPRETEiJ_G0016911	Ddx56	98	67.742	ENSSLDG00000018369	ddx56	98	63.784	Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0016911	Ddx56	75	86.819	ENSSARG00000014363	DDX56	79	85.596	Sorex_araneus
MGP_SPRETEiJ_G0016911	Ddx56	99	66.362	ENSSPUG00000000784	DDX56	96	66.362	Sphenodon_punctatus
MGP_SPRETEiJ_G0016911	Ddx56	98	66.532	ENSSPAG00000009392	ddx56	95	66.538	Stegastes_partitus
MGP_SPRETEiJ_G0016911	Ddx56	100	89.051	ENSSSCG00000016745	DDX56	100	89.051	Sus_scrofa
MGP_SPRETEiJ_G0016911	Ddx56	98	66.532	ENSTRUG00000018623	ddx56	99	62.983	Takifugu_rubripes
MGP_SPRETEiJ_G0016911	Ddx56	98	66.935	ENSTNIG00000013593	ddx56	98	62.075	Tetraodon_nigroviridis
MGP_SPRETEiJ_G0016911	Ddx56	100	88.462	ENSTBEG00000007119	DDX56	100	88.462	Tupaia_belangeri
MGP_SPRETEiJ_G0016911	Ddx56	86	88.347	ENSTTRG00000010552	DDX56	100	88.347	Tursiops_truncatus
MGP_SPRETEiJ_G0016911	Ddx56	100	87.363	ENSUAMG00000014194	DDX56	100	87.363	Ursus_americanus
MGP_SPRETEiJ_G0016911	Ddx56	100	87.363	ENSUMAG00000009666	DDX56	100	87.363	Ursus_maritimus
MGP_SPRETEiJ_G0016911	Ddx56	100	85.348	ENSVVUG00000011905	DDX56	100	85.348	Vulpes_vulpes
MGP_SPRETEiJ_G0016911	Ddx56	98	64.919	ENSXETG00000019000	ddx56	99	65.823	Xenopus_tropicalis
MGP_SPRETEiJ_G0016911	Ddx56	98	67.742	ENSXCOG00000017413	ddx56	98	62.454	Xiphophorus_couchianus
MGP_SPRETEiJ_G0016911	Ddx56	98	67.742	ENSXMAG00000018749	ddx56	99	62.681	Xiphophorus_maculatus