EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0016958 (Gene tree)
Gene ID: -
Gene Symbol: Rab1a
Alias: Gtbp|Rab-1|Rab1|Ypt1|ras-related YPT1 protein
Full Name: RAB1A%2C member RAS oncogene family
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Plus strand
Length: 26969 bases
Position: chr11:17535102-17562070
Accession: 97842
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0027120	MMR_HSR1	PF01926.23	2.6e-05	1	1
MGP_SPRETEiJ_P0027121	MMR_HSR1	PF01926.23	2.6e-05	1	1
MGP_SPRETEiJ_P0027124	MMR_HSR1	PF01926.23	2.8e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0027121	-	2826	-	MGP_SPRETEiJ_P0027121	202 (aa)	-	UPI0000006BCB
MGP_SPRETEiJ_T0027120	-	2835	-	MGP_SPRETEiJ_P0027120	202 (aa)	-	UPI0000006BCB
MGP_SPRETEiJ_T0027123	-	1191	-	MGP_SPRETEiJ_P0027123	126 (aa)	-	UPI0000208584
MGP_SPRETEiJ_T0027122	-	957	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0027125	-	714	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0027124	-	2669	-	MGP_SPRETEiJ_P0027124	205 (aa)	-	UPI0000001259

Gene Model

Click here to download MGP_SPRETEiJ_G0016958's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0016958's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_SPRETEiJ_G0016958	Rab1a	83	32.544	MGP_SPRETEiJ_G0028020	Rheb	91	32.544
MGP_SPRETEiJ_G0016958	Rab1a	69	30.496	MGP_SPRETEiJ_G0023960	Arl3	72	30.496
MGP_SPRETEiJ_G0016958	Rab1a	97	32.701	MGP_SPRETEiJ_G0016248	Rab36	79	32.701
MGP_SPRETEiJ_G0016958	Rab1a	98	46.465	MGP_SPRETEiJ_G0020130	Rab2b	92	46.465
MGP_SPRETEiJ_G0016958	Rab1a	81	38.415	MGP_SPRETEiJ_G0026395	Nras	96	39.041
MGP_SPRETEiJ_G0016958	Rab1a	82	34.337	MGP_SPRETEiJ_G0014820	Rab23	70	34.337
MGP_SPRETEiJ_G0016958	Rab1a	58	32.203	MGP_SPRETEiJ_G0029733	Arl8b	61	32.203
MGP_SPRETEiJ_G0016958	Rab1a	76	37.580	MGP_SPRETEiJ_G0021073	Rabl2	67	37.580
MGP_SPRETEiJ_G0016958	Rab1a	82	35.928	MGP_SPRETEiJ_G0033706	Mras	80	35.928
MGP_SPRETEiJ_G0016958	Rab1a	99	44.554	MGP_SPRETEiJ_G0024394	Rab14	97	47.619
MGP_SPRETEiJ_G0016958	Rab1a	60	34.959	MGP_SPRETEiJ_G0031792	-	65	34.959
MGP_SPRETEiJ_G0016958	Rab1a	83	45.833	MGP_SPRETEiJ_G0026114	Rab25	79	45.833
MGP_SPRETEiJ_G0016958	Rab1a	96	43.434	MGP_SPRETEiJ_G0034202	Rab33a	83	43.434
MGP_SPRETEiJ_G0016958	Rab1a	85	52.299	MGP_SPRETEiJ_G0033485	Rab11a	100	50.000
MGP_SPRETEiJ_G0016958	Rab1a	91	39.785	MGP_SPRETEiJ_G0022741	Rab31	95	39.785
MGP_SPRETEiJ_G0016958	Rab1a	100	53.960	MGP_SPRETEiJ_G0028630	Rab35	100	53.960
MGP_SPRETEiJ_G0016958	Rab1a	96	38.384	MGP_SPRETEiJ_G0031162	Rab6a	94	38.384
MGP_SPRETEiJ_G0016958	Rab1a	100	92.079	MGP_SPRETEiJ_G0023450	Rab1b	100	92.079
MGP_SPRETEiJ_G0016958	Rab1a	100	45.581	MGP_SPRETEiJ_G0022327	Rab11b	98	53.425
MGP_SPRETEiJ_G0016958	Rab1a	83	45.238	MGP_SPRETEiJ_G0018231	Rab37	78	45.238
MGP_SPRETEiJ_G0016958	Rab1a	80	32.298	MGP_SPRETEiJ_G0028777	-	85	32.298
MGP_SPRETEiJ_G0016958	Rab1a	82	50.602	MGP_SPRETEiJ_G0031102	Rab30	82	50.602
MGP_SPRETEiJ_G0016958	Rab1a	79	39.264	MGP_SPRETEiJ_G0029636	Rab7	93	39.024
MGP_SPRETEiJ_G0016958	Rab1a	62	31.061	MGP_SPRETEiJ_G0026008	Arl14	65	31.061
MGP_SPRETEiJ_G0016958	Rab1a	96	45.361	MGP_SPRETEiJ_G0022894	Rab18	93	45.361
MGP_SPRETEiJ_G0016958	Rab1a	58	34.454	MGP_SPRETEiJ_G0015439	Arl8a	62	34.454
MGP_SPRETEiJ_G0016958	Rab1a	87	43.820	MGP_SPRETEiJ_G0034360	Rab39b	84	43.820
MGP_SPRETEiJ_G0016958	Rab1a	78	40.373	MGP_SPRETEiJ_G0017637	Rab34	62	40.491
MGP_SPRETEiJ_G0016958	Rab1a	58	31.092	MGP_SPRETEiJ_G0015206	Arl4c	61	31.092
MGP_SPRETEiJ_G0016958	Rab1a	69	30.201	MGP_SPRETEiJ_G0018070	Arl4d	73	30.201
MGP_SPRETEiJ_G0016958	Rab1a	82	50.909	MGP_SPRETEiJ_G0018720	Rab15	78	50.909
MGP_SPRETEiJ_G0016958	Rab1a	58	33.058	MGP_SPRETEiJ_G0023508	Arl2	61	33.058
MGP_SPRETEiJ_G0016958	Rab1a	83	50.296	MGP_SPRETEiJ_G0022750	Rab12	58	50.296
MGP_SPRETEiJ_G0016958	Rab1a	77	38.994	MGP_SPRETEiJ_G0034594	Rab9b	79	38.994
MGP_SPRETEiJ_G0016958	Rab1a	96	38.660	MGP_SPRETEiJ_G0025672	Rab22a	97	38.660
MGP_SPRETEiJ_G0016958	Rab1a	81	38.415	MGP_SPRETEiJ_G0030102	Kras	97	35.676
MGP_SPRETEiJ_G0016958	Rab1a	96	36.410	MGP_SPRETEiJ_G0033730	Rab6b	94	36.410
MGP_SPRETEiJ_G0016958	Rab1a	80	31.902	MGP_SPRETEiJ_G0030206	Rasl2-9	73	31.902
MGP_SPRETEiJ_G0016958	Rab1a	96	43.590	MGP_SPRETEiJ_G0018027	Rab5c	89	43.590
MGP_SPRETEiJ_G0016958	Rab1a	58	31.933	MGP_SPRETEiJ_G0018557	Arl4a	59	31.933
MGP_SPRETEiJ_G0016958	Rab1a	96	43.367	MGP_SPRETEiJ_G0016774	Rab5b	90	43.367
MGP_SPRETEiJ_G0016958	Rab1a	84	43.429	MGP_SPRETEiJ_G0025911	Rab33b	76	43.429
MGP_SPRETEiJ_G0016958	Rab1a	92	48.108	MGP_SPRETEiJ_G0026744	Rab2a	99	45.238

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0016958	Rab1a	100	100.000	ENSG00000138069	RAB1A	100	100.000	Homo_sapiens
MGP_SPRETEiJ_G0016958	Rab1a	100	95.545	ENSAPOG00000008143	-	100	95.545	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0016958	Rab1a	100	100.000	ENSAMEG00000001127	RAB1A	100	100.000	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0016958	Rab1a	100	95.545	ENSAOCG00000020606	-	100	95.545	Amphiprion_ocellaris
MGP_SPRETEiJ_G0016958	Rab1a	100	95.545	ENSAPEG00000022488	-	100	95.545	Amphiprion_percula
MGP_SPRETEiJ_G0016958	Rab1a	100	100.000	ENSANAG00000020929	RAB1A	100	100.000	Aotus_nancymaae
MGP_SPRETEiJ_G0016958	Rab1a	100	96.040	ENSACLG00000003326	-	100	96.040	Astatotilapia_calliptera
MGP_SPRETEiJ_G0016958	Rab1a	100	94.554	ENSAMXG00000034850	-	100	94.554	Astyanax_mexicanus
MGP_SPRETEiJ_G0016958	Rab1a	100	100.000	ENSBTAG00000016720	RAB1A	100	100.000	Bos_taurus
MGP_SPRETEiJ_G0016958	Rab1a	100	100.000	ENSCJAG00000046275	RAB1A	100	100.000	Callithrix_jacchus
MGP_SPRETEiJ_G0016958	Rab1a	100	100.000	ENSCAFG00000003187	RAB1A	100	100.000	Canis_familiaris
MGP_SPRETEiJ_G0016958	Rab1a	100	100.000	ENSCAFG00020026971	RAB1A	100	100.000	Canis_lupus_dingo
MGP_SPRETEiJ_G0016958	Rab1a	98	100.000	ENSCHIG00000014060	RAB1A	96	100.000	Capra_hircus
MGP_SPRETEiJ_G0016958	Rab1a	100	98.515	ENSTSYG00000005996	RAB1A	100	100.000	Carlito_syrichta
MGP_SPRETEiJ_G0016958	Rab1a	100	100.000	ENSCPOG00000015437	RAB1A	100	100.000	Cavia_porcellus
MGP_SPRETEiJ_G0016958	Rab1a	100	100.000	ENSCCAG00000021869	RAB1A	100	100.000	Cebus_capucinus
MGP_SPRETEiJ_G0016958	Rab1a	100	100.000	ENSCATG00000030853	RAB1A	100	100.000	Cercocebus_atys
MGP_SPRETEiJ_G0016958	Rab1a	100	100.000	ENSCLAG00000014766	RAB1A	100	100.000	Chinchilla_lanigera
MGP_SPRETEiJ_G0016958	Rab1a	100	99.512	ENSCPBG00000013243	RAB1A	100	99.512	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0016958	Rab1a	100	97.561	ENSCANG00000035916	RAB1A	100	97.561	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0016958	Rab1a	100	100.000	ENSCGRG00001012691	-	100	100.000	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0016958	Rab1a	100	100.000	ENSCGRG00000008456	-	100	100.000	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0016958	Rab1a	100	100.000	ENSDNOG00000018236	RAB1A	100	100.000	Dasypus_novemcinctus
MGP_SPRETEiJ_G0016958	Rab1a	100	100.000	ENSDORG00000028628	-	100	100.000	Dipodomys_ordii
MGP_SPRETEiJ_G0016958	Rab1a	100	84.466	FBgn0285937	Rab1	100	84.466	Drosophila_melanogaster
MGP_SPRETEiJ_G0016958	Rab1a	100	100.000	ENSETEG00000002205	RAB1A	100	100.000	Echinops_telfairi
MGP_SPRETEiJ_G0016958	Rab1a	100	100.000	ENSEASG00005007298	RAB1A	100	100.000	Equus_asinus_asinus
MGP_SPRETEiJ_G0016958	Rab1a	100	100.000	ENSECAG00000009926	RAB1A	100	100.000	Equus_caballus
MGP_SPRETEiJ_G0016958	Rab1a	100	100.000	ENSEEUG00000011721	RAB1A	100	100.000	Erinaceus_europaeus
MGP_SPRETEiJ_G0016958	Rab1a	100	95.588	ENSELUG00000012166	RAB1A	96	95.588	Esox_lucius
MGP_SPRETEiJ_G0016958	Rab1a	100	100.000	ENSFCAG00000002536	RAB1A	100	100.000	Felis_catus
MGP_SPRETEiJ_G0016958	Rab1a	100	97.525	ENSFALG00000013624	RAB1A	99	97.537	Ficedula_albicollis
MGP_SPRETEiJ_G0016958	Rab1a	100	100.000	ENSFDAG00000019505	-	100	100.000	Fukomys_damarensis
MGP_SPRETEiJ_G0016958	Rab1a	100	94.554	ENSFHEG00000014414	-	100	94.554	Fundulus_heteroclitus
MGP_SPRETEiJ_G0016958	Rab1a	100	99.512	ENSGALG00000031582	RAB1A	100	99.512	Gallus_gallus
MGP_SPRETEiJ_G0016958	Rab1a	100	94.554	ENSGAFG00000000918	-	100	94.554	Gambusia_affinis
MGP_SPRETEiJ_G0016958	Rab1a	100	99.512	ENSGAGG00000006802	RAB1A	100	99.512	Gopherus_agassizii
MGP_SPRETEiJ_G0016958	Rab1a	100	100.000	ENSGGOG00000026603	RAB1A	100	100.000	Gorilla_gorilla
MGP_SPRETEiJ_G0016958	Rab1a	100	100.000	ENSHGLG00000013585	RAB1A	100	100.000	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0016958	Rab1a	100	98.515	ENSHGLG00100007994	RAB1A	99	98.515	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0016958	Rab1a	100	100.000	ENSSTOG00000020693	-	100	100.000	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0016958	Rab1a	98	100.000	ENSJJAG00000014396	Rab1a	100	100.000	Jaculus_jaculus
MGP_SPRETEiJ_G0016958	Rab1a	98	95.431	ENSKMAG00000014038	-	93	95.431	Kryptolebias_marmoratus
MGP_SPRETEiJ_G0016958	Rab1a	100	95.050	ENSLBEG00000028426	RAB1A	100	95.050	Labrus_bergylta
MGP_SPRETEiJ_G0016958	Rab1a	100	99.010	ENSLACG00000012869	RAB1A	100	98.537	Latimeria_chalumnae
MGP_SPRETEiJ_G0016958	Rab1a	100	100.000	ENSLAFG00000016666	RAB1A	100	100.000	Loxodonta_africana
MGP_SPRETEiJ_G0016958	Rab1a	100	100.000	ENSMFAG00000046246	RAB1A	100	100.000	Macaca_fascicularis
MGP_SPRETEiJ_G0016958	Rab1a	98	100.000	ENSMMUG00000021721	RAB1A	91	100.000	Macaca_mulatta
MGP_SPRETEiJ_G0016958	Rab1a	95	99.485	ENSMNEG00000028414	-	97	99.485	Macaca_nemestrina
MGP_SPRETEiJ_G0016958	Rab1a	100	100.000	ENSMLEG00000042535	RAB1A	100	100.000	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0016958	Rab1a	100	96.040	ENSMZEG00005013959	-	100	96.040	Maylandia_zebra
MGP_SPRETEiJ_G0016958	Rab1a	98	99.492	ENSMGAG00000004611	RAB1A	98	99.492	Meleagris_gallopavo
MGP_SPRETEiJ_G0016958	Rab1a	100	99.512	ENSMAUG00000012156	Rab1a	100	99.512	Mesocricetus_auratus
MGP_SPRETEiJ_G0016958	Rab1a	100	100.000	ENSMICG00000012587	RAB1A	100	100.000	Microcebus_murinus
MGP_SPRETEiJ_G0016958	Rab1a	100	99.512	ENSMOCG00000017022	Rab1a	100	99.512	Microtus_ochrogaster
MGP_SPRETEiJ_G0016958	Rab1a	100	93.564	ENSMMOG00000018709	RAB1A	100	93.564	Mola_mola
MGP_SPRETEiJ_G0016958	Rab1a	100	99.512	ENSMODG00000003340	RAB1A	100	99.512	Monodelphis_domestica
MGP_SPRETEiJ_G0016958	Rab1a	100	100.000	MGP_CAROLIEiJ_G0016115	Rab1a	100	100.000	Mus_caroli
MGP_SPRETEiJ_G0016958	Rab1a	100	100.000	ENSMUSG00000020149	Rab1a	100	100.000	Mus_musculus
MGP_SPRETEiJ_G0016958	Rab1a	100	100.000	MGP_PahariEiJ_G0016776	Rab1a	100	100.000	Mus_pahari
MGP_SPRETEiJ_G0016958	Rab1a	100	100.000	ENSMPUG00000006139	RAB1A	82	100.000	Mustela_putorius_furo
MGP_SPRETEiJ_G0016958	Rab1a	100	100.000	ENSMLUG00000009489	RAB1A	100	100.000	Myotis_lucifugus
MGP_SPRETEiJ_G0016958	Rab1a	100	100.000	ENSNGAG00000005838	Rab1a	100	100.000	Nannospalax_galili
MGP_SPRETEiJ_G0016958	Rab1a	100	96.040	ENSNBRG00000020492	-	100	96.040	Neolamprologus_brichardi
MGP_SPRETEiJ_G0016958	Rab1a	98	100.000	ENSOPRG00000006595	RAB1A	100	100.000	Ochotona_princeps
MGP_SPRETEiJ_G0016958	Rab1a	95	100.000	ENSODEG00000011248	-	96	100.000	Octodon_degus
MGP_SPRETEiJ_G0016958	Rab1a	100	94.059	ENSONIG00000006819	-	100	93.627	Oreochromis_niloticus
MGP_SPRETEiJ_G0016958	Rab1a	100	99.512	ENSOANG00000012438	RAB1A	100	99.512	Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0016958	Rab1a	100	100.000	ENSOCUG00000017003	RAB1A	100	100.000	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0016958	Rab1a	100	100.000	ENSOGAG00000026181	RAB1A	100	100.000	Otolemur_garnettii
MGP_SPRETEiJ_G0016958	Rab1a	98	100.000	ENSOARG00000019997	RAB1A	97	100.000	Ovis_aries
MGP_SPRETEiJ_G0016958	Rab1a	100	100.000	ENSPPAG00000030253	RAB1A	100	100.000	Pan_paniscus
MGP_SPRETEiJ_G0016958	Rab1a	100	100.000	ENSPPRG00000025077	RAB1A	100	100.000	Panthera_pardus
MGP_SPRETEiJ_G0016958	Rab1a	98	100.000	ENSPTIG00000013471	RAB1A	97	100.000	Panthera_tigris_altaica
MGP_SPRETEiJ_G0016958	Rab1a	100	100.000	ENSPTRG00000011989	RAB1A	100	100.000	Pan_troglodytes
MGP_SPRETEiJ_G0016958	Rab1a	100	100.000	ENSPANG00000010485	RAB1A	100	100.000	Papio_anubis
MGP_SPRETEiJ_G0016958	Rab1a	100	97.030	ENSPSIG00000008028	RAB1A	99	97.030	Pelodiscus_sinensis
MGP_SPRETEiJ_G0016958	Rab1a	100	96.040	ENSPMGG00000021015	-	99	96.040	Periophthalmus_magnuspinnatus
MGP_SPRETEiJ_G0016958	Rab1a	100	100.000	ENSPEMG00000009340	Rab1a	100	100.000	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0016958	Rab1a	100	99.512	ENSPCIG00000023212	RAB1A	100	99.512	Phascolarctos_cinereus
MGP_SPRETEiJ_G0016958	Rab1a	100	94.059	ENSPFOG00000000498	-	99	93.137	Poecilia_formosa
MGP_SPRETEiJ_G0016958	Rab1a	100	94.059	ENSPLAG00000015592	-	100	94.059	Poecilia_latipinna
MGP_SPRETEiJ_G0016958	Rab1a	100	94.059	ENSPMEG00000005288	-	100	94.059	Poecilia_mexicana
MGP_SPRETEiJ_G0016958	Rab1a	100	100.000	ENSPPYG00000012360	RAB1A	100	100.000	Pongo_abelii
MGP_SPRETEiJ_G0016958	Rab1a	100	100.000	ENSPCOG00000017244	RAB1A	100	100.000	Propithecus_coquereli
MGP_SPRETEiJ_G0016958	Rab1a	100	96.040	ENSPNYG00000015841	-	100	96.040	Pundamilia_nyererei
MGP_SPRETEiJ_G0016958	Rab1a	100	100.000	ENSRNOG00000004992	Rab1a	100	100.000	Rattus_norvegicus
MGP_SPRETEiJ_G0016958	Rab1a	100	100.000	ENSSBOG00000023732	RAB1A	100	100.000	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0016958	Rab1a	98	99.492	ENSSHAG00000003597	RAB1A	98	98.010	Sarcophilus_harrisii
MGP_SPRETEiJ_G0016958	Rab1a	100	95.545	ENSSMAG00000021049	-	100	95.545	Scophthalmus_maximus
MGP_SPRETEiJ_G0016958	Rab1a	100	96.040	ENSSDUG00000022535	RAB1A	100	96.040	Seriola_dumerili
MGP_SPRETEiJ_G0016958	Rab1a	100	99.512	ENSSPUG00000012822	RAB1A	100	99.512	Sphenodon_punctatus
MGP_SPRETEiJ_G0016958	Rab1a	100	95.545	ENSSPAG00000012564	-	100	95.545	Stegastes_partitus
MGP_SPRETEiJ_G0016958	Rab1a	100	100.000	ENSSSCG00000008359	RAB1A	100	100.000	Sus_scrofa
MGP_SPRETEiJ_G0016958	Rab1a	100	97.525	ENSTGUG00000002328	RAB1A	100	97.073	Taeniopygia_guttata
MGP_SPRETEiJ_G0016958	Rab1a	100	95.050	ENSTRUG00000024994	RAB1A	100	95.050	Takifugu_rubripes
MGP_SPRETEiJ_G0016958	Rab1a	98	100.000	ENSUMAG00000021038	RAB1A	99	100.000	Ursus_maritimus
MGP_SPRETEiJ_G0016958	Rab1a	98	99.495	ENSVPAG00000005640	RAB1A	99	99.495	Vicugna_pacos
MGP_SPRETEiJ_G0016958	Rab1a	100	100.000	ENSVVUG00000027588	RAB1A	100	100.000	Vulpes_vulpes
MGP_SPRETEiJ_G0016958	Rab1a	100	94.554	ENSXMAG00000015776	-	100	94.554	Xiphophorus_maculatus