EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0017400 (Gene tree)
Gene ID: -
Gene Symbol: Chd3
Alias: 2600010P09Rik|Chd7|Mi-2 alpha|Prp7|Prp9-1
Full Name: chromodomain helicase DNA binding protein 3
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Minus strand
Length: 26045 bases
Position: chr11:69222607-69248651
Accession: 1344395
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0028906	ResIII	PF04851.15	3.5e-08	1	1
MGP_SPRETEiJ_P0028905	ResIII	PF04851.15	3.8e-08	1	1
MGP_SPRETEiJ_P0028904	ResIII	PF04851.15	3.9e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0028908	-	432	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0028909	-	591	-	MGP_SPRETEiJ_P0028909	196 (aa)	-	-
MGP_SPRETEiJ_T0028906	-	5657	-	MGP_SPRETEiJ_P0028906	1885 (aa)	-	-
MGP_SPRETEiJ_T0028907	-	747	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0028904	-	7278	-	MGP_SPRETEiJ_P0028904	2054 (aa)	-	-
MGP_SPRETEiJ_T0028905	-	6048	-	MGP_SPRETEiJ_P0028905	2015 (aa)	-	-
MGP_SPRETEiJ_T0028902	-	2152	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0028903	-	1880	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0028910	-	453	-	MGP_SPRETEiJ_P0028910	151 (aa)	-	-
MGP_SPRETEiJ_T0028911	-	430	-	MGP_SPRETEiJ_P0028911	143 (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0017400's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0017400's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_SPRETEiJ_G0017400	Chd3	91	80.841	MGP_SPRETEiJ_G0029911	Chd4	95	70.260
MGP_SPRETEiJ_G0017400	Chd3	95	71.053	MGP_SPRETEiJ_G0027850	Chd5	97	70.211

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0017400	Chd3	100	97.667	ENSG00000170004	CHD3	100	96.898	Homo_sapiens
MGP_SPRETEiJ_G0017400	Chd3	88	76.151	ENSAPOG00000005614	chd3	94	79.771	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0017400	Chd3	66	96.047	ENSAMEG00000003025	-	100	96.047	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0017400	Chd3	88	75.810	ENSACIG00000019671	chd3	99	79.272	Amphilophus_citrinellus
MGP_SPRETEiJ_G0017400	Chd3	95	80.546	ENSAOCG00000023784	chd3	97	80.973	Amphiprion_ocellaris
MGP_SPRETEiJ_G0017400	Chd3	95	79.863	ENSAPEG00000006341	chd3	96	76.023	Amphiprion_percula
MGP_SPRETEiJ_G0017400	Chd3	94	80.969	ENSATEG00000000848	chd3	99	73.964	Anabas_testudineus
MGP_SPRETEiJ_G0017400	Chd3	99	85.081	ENSACAG00000004276	CHD3	95	84.332	Anolis_carolinensis
MGP_SPRETEiJ_G0017400	Chd3	99	93.175	ENSANAG00000034323	CHD3	99	97.181	Aotus_nancymaae
MGP_SPRETEiJ_G0017400	Chd3	98	74.759	ENSACLG00000009222	chd3	99	74.477	Astatotilapia_calliptera
MGP_SPRETEiJ_G0017400	Chd3	100	96.171	ENSBTAG00000014377	CHD3	100	96.171	Bos_taurus
MGP_SPRETEiJ_G0017400	Chd3	100	97.614	ENSCJAG00000014766	CHD3	100	97.087	Callithrix_jacchus
MGP_SPRETEiJ_G0017400	Chd3	100	95.518	ENSCAFG00000016859	CHD3	98	97.005	Canis_familiaris
MGP_SPRETEiJ_G0017400	Chd3	96	97.060	ENSCAFG00020007422	CHD3	100	96.894	Canis_lupus_dingo
MGP_SPRETEiJ_G0017400	Chd3	100	95.625	ENSCHIG00000016737	CHD3	99	96.956	Capra_hircus
MGP_SPRETEiJ_G0017400	Chd3	100	97.667	ENSTSYG00000035658	CHD3	98	97.523	Carlito_syrichta
MGP_SPRETEiJ_G0017400	Chd3	100	92.865	ENSCAPG00000014864	CHD3	99	93.854	Cavia_aperea
MGP_SPRETEiJ_G0017400	Chd3	100	95.573	ENSCPOG00000022653	CHD3	99	96.474	Cavia_porcellus
MGP_SPRETEiJ_G0017400	Chd3	100	97.508	ENSCCAG00000034792	CHD3	100	96.704	Cebus_capucinus
MGP_SPRETEiJ_G0017400	Chd3	100	97.614	ENSCATG00000041717	CHD3	100	96.752	Cercocebus_atys
MGP_SPRETEiJ_G0017400	Chd3	100	97.561	ENSCLAG00000010523	CHD3	100	97.469	Chinchilla_lanigera
MGP_SPRETEiJ_G0017400	Chd3	100	95.729	ENSCSAG00000011122	CHD3	99	97.160	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0017400	Chd3	93	83.807	ENSCPBG00000011966	CHD3	99	87.157	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0017400	Chd3	100	97.508	ENSCANG00000037641	CHD3	98	97.420	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0017400	Chd3	100	98.408	ENSCGRG00001011306	Chd3	100	98.295	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0017400	Chd3	94	98.438	ENSCGRG00000007878	Chd3	99	98.529	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0017400	Chd3	92	83.650	ENSCSEG00000004489	chd3	98	78.351	Cynoglossus_semilaevis
MGP_SPRETEiJ_G0017400	Chd3	96	74.315	ENSCVAG00000007293	chd3	99	74.304	Cyprinodon_variegatus
MGP_SPRETEiJ_G0017400	Chd3	95	77.661	ENSDARG00000021405	chd3	99	76.173	Danio_rerio
MGP_SPRETEiJ_G0017400	Chd3	99	79.203	ENSDNOG00000047846	CHD3	98	82.020	Dasypus_novemcinctus
MGP_SPRETEiJ_G0017400	Chd3	100	96.978	ENSDORG00000010713	Chd3	100	96.849	Dipodomys_ordii
MGP_SPRETEiJ_G0017400	Chd3	100	88.854	ENSETEG00000017733	CHD3	100	90.301	Echinops_telfairi
MGP_SPRETEiJ_G0017400	Chd3	52	77.575	ENSEBUG00000008310	chd3	99	70.000	Eptatretus_burgeri
MGP_SPRETEiJ_G0017400	Chd3	93	95.541	ENSEASG00005019360	CHD3	100	97.004	Equus_asinus_asinus
MGP_SPRETEiJ_G0017400	Chd3	93	95.541	ENSECAG00000010051	CHD3	100	97.059	Equus_caballus
MGP_SPRETEiJ_G0017400	Chd3	89	91.803	ENSEEUG00000015205	CHD3	93	91.803	Erinaceus_europaeus
MGP_SPRETEiJ_G0017400	Chd3	81	90.476	ENSELUG00000019499	chd3	99	90.476	Esox_lucius
MGP_SPRETEiJ_G0017400	Chd3	100	95.000	ENSFCAG00000009629	CHD3	98	95.777	Felis_catus
MGP_SPRETEiJ_G0017400	Chd3	100	93.021	ENSFDAG00000008220	CHD3	99	94.571	Fukomys_damarensis
MGP_SPRETEiJ_G0017400	Chd3	89	80.000	ENSGMOG00000013599	chd3	91	80.609	Gadus_morhua
MGP_SPRETEiJ_G0017400	Chd3	62	74.872	ENSGAFG00000004055	chd3	99	76.068	Gambusia_affinis
MGP_SPRETEiJ_G0017400	Chd3	99	70.518	ENSGACG00000019275	chd3	90	73.911	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0017400	Chd3	77	86.558	ENSGAGG00000013164	CHD3	98	86.762	Gopherus_agassizii
MGP_SPRETEiJ_G0017400	Chd3	100	97.561	ENSGGOG00000013496	CHD3	98	97.472	Gorilla_gorilla
MGP_SPRETEiJ_G0017400	Chd3	100	97.455	ENSHGLG00000012017	CHD3	100	96.929	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0017400	Chd3	89	89.448	ENSHGLG00100013902	CHD3	99	89.514	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0017400	Chd3	97	72.188	ENSHCOG00000010170	chd3	96	72.510	Hippocampus_comes
MGP_SPRETEiJ_G0017400	Chd3	94	73.239	ENSIPUG00000003271	chd3	94	78.922	Ictalurus_punctatus
MGP_SPRETEiJ_G0017400	Chd3	100	97.508	ENSSTOG00000025907	CHD3	100	97.417	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0017400	Chd3	100	96.660	ENSJJAG00000017633	Chd3	100	96.539	Jaculus_jaculus
MGP_SPRETEiJ_G0017400	Chd3	87	90.047	ENSKMAG00000019292	chd3	97	75.565	Kryptolebias_marmoratus
MGP_SPRETEiJ_G0017400	Chd3	96	71.429	ENSLBEG00000028485	chd3	93	75.986	Labrus_bergylta
MGP_SPRETEiJ_G0017400	Chd3	99	74.885	ENSLACG00000008031	CHD3	98	75.089	Latimeria_chalumnae
MGP_SPRETEiJ_G0017400	Chd3	99	76.615	ENSLOCG00000013965	chd3	97	76.877	Lepisosteus_oculatus
MGP_SPRETEiJ_G0017400	Chd3	98	91.751	ENSLAFG00000000572	CHD3	100	93.326	Loxodonta_africana
MGP_SPRETEiJ_G0017400	Chd3	100	97.561	ENSMFAG00000020113	CHD3	98	97.472	Macaca_fascicularis
MGP_SPRETEiJ_G0017400	Chd3	100	93.073	ENSMMUG00000022221	CHD3	99	93.942	Macaca_mulatta
MGP_SPRETEiJ_G0017400	Chd3	100	97.561	ENSMNEG00000001728	CHD3	99	96.619	Macaca_nemestrina
MGP_SPRETEiJ_G0017400	Chd3	100	97.614	ENSMLEG00000032249	CHD3	98	97.523	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0017400	Chd3	88	76.338	ENSMAMG00000000564	chd3	94	86.705	Mastacembelus_armatus
MGP_SPRETEiJ_G0017400	Chd3	100	98.249	ENSMAUG00000013873	Chd3	100	96.937	Mesocricetus_auratus
MGP_SPRETEiJ_G0017400	Chd3	100	96.798	ENSMICG00000008741	CHD3	100	96.798	Microcebus_murinus
MGP_SPRETEiJ_G0017400	Chd3	100	98.515	ENSMOCG00000004848	Chd3	100	98.394	Microtus_ochrogaster
MGP_SPRETEiJ_G0017400	Chd3	98	74.399	ENSMMOG00000012699	chd3	99	73.816	Mola_mola
MGP_SPRETEiJ_G0017400	Chd3	93	93.981	ENSMODG00000007509	CHD3	100	93.788	Monodelphis_domestica
MGP_SPRETEiJ_G0017400	Chd3	100	99.523	MGP_CAROLIEiJ_G0016564	Chd3	100	99.523	Mus_caroli
MGP_SPRETEiJ_G0017400	Chd3	100	99.841	ENSMUSG00000018474	Chd3	100	99.805	Mus_musculus
MGP_SPRETEiJ_G0017400	Chd3	100	99.363	MGP_PahariEiJ_G0017695	Chd3	100	99.363	Mus_pahari
MGP_SPRETEiJ_G0017400	Chd3	87	95.161	ENSMPUG00000008861	CHD3	100	96.853	Mustela_putorius_furo
MGP_SPRETEiJ_G0017400	Chd3	100	94.329	ENSMLUG00000014643	-	98	95.692	Myotis_lucifugus
MGP_SPRETEiJ_G0017400	Chd3	100	96.510	ENSNGAG00000000773	Chd3	98	97.920	Nannospalax_galili
MGP_SPRETEiJ_G0017400	Chd3	88	76.313	ENSNBRG00000000636	chd3	98	76.106	Neolamprologus_brichardi
MGP_SPRETEiJ_G0017400	Chd3	100	94.592	ENSNLEG00000009770	CHD3	100	94.139	Nomascus_leucogenys
MGP_SPRETEiJ_G0017400	Chd3	88	89.236	ENSMEUG00000005852	CHD3	87	90.164	Notamacropus_eugenii
MGP_SPRETEiJ_G0017400	Chd3	95	94.275	ENSOPRG00000011069	CHD3	100	95.522	Ochotona_princeps
MGP_SPRETEiJ_G0017400	Chd3	100	95.625	ENSODEG00000017785	CHD3	99	97.057	Octodon_degus
MGP_SPRETEiJ_G0017400	Chd3	99	74.530	ENSONIG00000009292	chd3	100	75.051	Oreochromis_niloticus
MGP_SPRETEiJ_G0017400	Chd3	99	90.550	ENSOCUG00000029299	CHD3	100	91.671	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0017400	Chd3	85	71.323	ENSORLG00000007107	chd3	93	71.692	Oryzias_latipes
MGP_SPRETEiJ_G0017400	Chd3	60	72.286	ENSORLG00020008387	chd3	95	73.345	Oryzias_latipes_hni
MGP_SPRETEiJ_G0017400	Chd3	88	77.116	ENSOMEG00000013691	chd3	99	78.010	Oryzias_melastigma
MGP_SPRETEiJ_G0017400	Chd3	100	95.208	ENSOGAG00000003216	CHD3	99	96.651	Otolemur_garnettii
MGP_SPRETEiJ_G0017400	Chd3	100	92.460	ENSOARG00000017855	CHD3	99	94.580	Ovis_aries
MGP_SPRETEiJ_G0017400	Chd3	100	95.196	ENSPPAG00000032886	CHD3	98	95.170	Pan_paniscus
MGP_SPRETEiJ_G0017400	Chd3	100	96.872	ENSPPRG00000000626	CHD3	99	95.773	Panthera_pardus
MGP_SPRETEiJ_G0017400	Chd3	100	97.720	ENSPTRG00000008714	CHD3	100	96.993	Pan_troglodytes
MGP_SPRETEiJ_G0017400	Chd3	100	95.917	ENSPANG00000023938	CHD3	100	95.540	Papio_anubis
MGP_SPRETEiJ_G0017400	Chd3	95	81.011	ENSPKIG00000006305	chd3	99	80.063	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0017400	Chd3	57	90.146	ENSPSIG00000010177	CHD3	98	90.420	Pelodiscus_sinensis
MGP_SPRETEiJ_G0017400	Chd3	100	96.613	ENSPEMG00000014262	Chd3	99	97.869	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0017400	Chd3	100	93.309	ENSPCIG00000005442	CHD3	99	93.227	Phascolarctos_cinereus
MGP_SPRETEiJ_G0017400	Chd3	99	71.660	ENSPFOG00000012464	chd3	92	73.357	Poecilia_formosa
MGP_SPRETEiJ_G0017400	Chd3	83	87.391	ENSPLAG00000002887	chd3	94	79.909	Poecilia_latipinna
MGP_SPRETEiJ_G0017400	Chd3	56	81.469	ENSPMEG00000016725	chd3	93	80.730	Poecilia_mexicana
MGP_SPRETEiJ_G0017400	Chd3	99	75.679	ENSPREG00000011044	chd3	98	77.907	Poecilia_reticulata
MGP_SPRETEiJ_G0017400	Chd3	98	92.332	ENSPPYG00000007940	CHD3	98	93.895	Pongo_abelii
MGP_SPRETEiJ_G0017400	Chd3	96	95.652	ENSPCAG00000004350	CHD3	96	96.478	Procavia_capensis
MGP_SPRETEiJ_G0017400	Chd3	100	97.508	ENSPCOG00000020952	CHD3	100	96.814	Propithecus_coquereli
MGP_SPRETEiJ_G0017400	Chd3	86	93.576	ENSPVAG00000016344	CHD3	87	94.841	Pteropus_vampyrus
MGP_SPRETEiJ_G0017400	Chd3	97	78.157	ENSPNAG00000020393	chd3	98	81.884	Pygocentrus_nattereri
MGP_SPRETEiJ_G0017400	Chd3	93	96.598	ENSRNOG00000009722	Chd3	100	98.474	Rattus_norvegicus
MGP_SPRETEiJ_G0017400	Chd3	100	94.139	ENSRBIG00000033562	CHD3	99	93.545	Rhinopithecus_bieti
MGP_SPRETEiJ_G0017400	Chd3	100	97.614	ENSRROG00000029554	CHD3	98	97.523	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0017400	Chd3	100	97.667	ENSSBOG00000020719	CHD3	99	97.228	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0017400	Chd3	100	93.959	ENSSHAG00000014412	CHD3	100	93.831	Sarcophilus_harrisii
MGP_SPRETEiJ_G0017400	Chd3	90	80.406	ENSSFOG00015023123	chd3	98	75.595	Scleropages_formosus
MGP_SPRETEiJ_G0017400	Chd3	88	76.531	ENSSMAG00000006451	chd3	99	76.937	Scophthalmus_maximus
MGP_SPRETEiJ_G0017400	Chd3	58	72.161	ENSSDUG00000005792	chd3	95	73.035	Seriola_dumerili
MGP_SPRETEiJ_G0017400	Chd3	95	80.205	ENSSPAG00000013694	chd3	97	81.443	Stegastes_partitus
MGP_SPRETEiJ_G0017400	Chd3	100	95.731	ENSSSCG00000021363	CHD3	100	97.006	Sus_scrofa
MGP_SPRETEiJ_G0017400	Chd3	78	76.311	ENSTRUG00000014990	chd3	95	72.446	Takifugu_rubripes
MGP_SPRETEiJ_G0017400	Chd3	98	74.218	ENSTNIG00000012998	chd3	99	72.746	Tetraodon_nigroviridis
MGP_SPRETEiJ_G0017400	Chd3	67	97.619	ENSTBEG00000011454	-	71	97.619	Tupaia_belangeri
MGP_SPRETEiJ_G0017400	Chd3	99	95.899	ENSTTRG00000010295	CHD3	97	97.342	Tursiops_truncatus
MGP_SPRETEiJ_G0017400	Chd3	93	94.160	ENSUAMG00000005475	CHD3	98	97.009	Ursus_americanus
MGP_SPRETEiJ_G0017400	Chd3	58	100.000	ENSVPAG00000010794	-	62	100.000	Vicugna_pacos
MGP_SPRETEiJ_G0017400	Chd3	98	97.180	ENSVVUG00000028011	CHD3	99	96.807	Vulpes_vulpes
MGP_SPRETEiJ_G0017400	Chd3	99	73.035	ENSXETG00000012991	chd3	92	73.737	Xenopus_tropicalis
MGP_SPRETEiJ_G0017400	Chd3	54	82.957	ENSXCOG00000000809	chd3	93	83.070	Xiphophorus_couchianus
MGP_SPRETEiJ_G0017400	Chd3	82	86.127	ENSXMAG00000016035	chd3	99	88.095	Xiphophorus_maculatus