EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0017570 (Gene tree)
Gene ID: -
Gene Symbol: Tsr1
Alias: -
Full Name: TSR1 20S rRNA accumulation
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Plus strand
Length: 14023 bases
Position: chr11:74780029-74794051
Accession: 2144566
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0029588	AARP2CN	PF08142.12	9.1e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0029587	-	1549	-	MGP_SPRETEiJ_P0029587	65 (aa)	-	-
MGP_SPRETEiJ_T0029592	-	708	-	MGP_SPRETEiJ_P0029592	40 (aa)	-	UPI00016114C1
MGP_SPRETEiJ_T0029593	-	769	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0029590	-	2336	-	MGP_SPRETEiJ_P0029590	90 (aa)	-	UPI000173A925
MGP_SPRETEiJ_T0029591	-	542	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0029589	-	1358	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0029588	-	2522	-	MGP_SPRETEiJ_P0029588	803 (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0017570's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0017570's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0017570	Tsr1	100	85.466	ENSG00000167721	TSR1	100	85.590	Homo_sapiens
MGP_SPRETEiJ_G0017570	Tsr1	99	54.436	ENSAPOG00000020891	tsr1	99	55.957	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0017570	Tsr1	100	85.381	ENSAMEG00000007599	TSR1	99	85.381	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0017570	Tsr1	99	56.296	ENSACIG00000007090	tsr1	99	56.250	Amphilophus_citrinellus
MGP_SPRETEiJ_G0017570	Tsr1	99	54.217	ENSAOCG00000023284	tsr1	99	55.381	Amphiprion_ocellaris
MGP_SPRETEiJ_G0017570	Tsr1	94	54.987	ENSAPEG00000008452	tsr1	100	56.354	Amphiprion_percula
MGP_SPRETEiJ_G0017570	Tsr1	99	54.382	ENSATEG00000021961	tsr1	99	55.222	Anabas_testudineus
MGP_SPRETEiJ_G0017570	Tsr1	92	69.852	ENSAPLG00000013422	TSR1	100	69.717	Anas_platyrhynchos
MGP_SPRETEiJ_G0017570	Tsr1	70	57.639	ENSACAG00000000859	TSR1	92	58.579	Anolis_carolinensis
MGP_SPRETEiJ_G0017570	Tsr1	100	86.675	ENSANAG00000031071	TSR1	100	86.675	Aotus_nancymaae
MGP_SPRETEiJ_G0017570	Tsr1	99	55.210	ENSACLG00000007595	tsr1	99	55.381	Astatotilapia_calliptera
MGP_SPRETEiJ_G0017570	Tsr1	50	49.275	ENSAMXG00000008470	tsr1	95	47.577	Astyanax_mexicanus
MGP_SPRETEiJ_G0017570	Tsr1	100	87.811	ENSBTAG00000004225	TSR1	100	88.308	Bos_taurus
MGP_SPRETEiJ_G0017570	Tsr1	97	39.070	WBGene00006497	tag-151	96	39.520	Caenorhabditis_elegans
MGP_SPRETEiJ_G0017570	Tsr1	100	85.928	ENSCJAG00000012456	TSR1	100	85.928	Callithrix_jacchus
MGP_SPRETEiJ_G0017570	Tsr1	100	85.217	ENSCAFG00000002106	-	100	85.590	Canis_familiaris
MGP_SPRETEiJ_G0017570	Tsr1	90	84.711	ENSCAFG00000019273	-	100	86.910	Canis_familiaris
MGP_SPRETEiJ_G0017570	Tsr1	100	85.112	ENSCAFG00020009728	TSR1	100	85.484	Canis_lupus_dingo
MGP_SPRETEiJ_G0017570	Tsr1	100	87.935	ENSCHIG00000023935	TSR1	100	88.433	Capra_hircus
MGP_SPRETEiJ_G0017570	Tsr1	100	86.301	ENSTSYG00000005468	TSR1	100	86.301	Carlito_syrichta
MGP_SPRETEiJ_G0017570	Tsr1	93	85.657	ENSCPOG00000014833	TSR1	99	85.925	Cavia_porcellus
MGP_SPRETEiJ_G0017570	Tsr1	93	86.577	ENSCCAG00000028962	TSR1	98	86.577	Cebus_capucinus
MGP_SPRETEiJ_G0017570	Tsr1	100	86.087	ENSCATG00000044262	TSR1	100	86.087	Cercocebus_atys
MGP_SPRETEiJ_G0017570	Tsr1	100	86.426	ENSCLAG00000005567	TSR1	100	86.426	Chinchilla_lanigera
MGP_SPRETEiJ_G0017570	Tsr1	100	86.211	ENSCSAG00000013788	TSR1	100	86.211	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0017570	Tsr1	99	69.288	ENSCPBG00000020363	TSR1	97	69.678	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0017570	Tsr1	97	45.455	ENSCING00000020658	-	99	45.455	Ciona_intestinalis
MGP_SPRETEiJ_G0017570	Tsr1	97	44.724	ENSCSAVG00000001875	-	100	44.320	Ciona_savignyi
MGP_SPRETEiJ_G0017570	Tsr1	100	76.361	ENSCANG00000033056	TSR1	100	78.705	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0017570	Tsr1	100	92.662	ENSCGRG00001023942	Tsr1	100	92.413	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0017570	Tsr1	100	84.682	ENSCGRG00000013015	Tsr1	100	86.550	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0017570	Tsr1	99	53.597	ENSCSEG00000013009	tsr1	99	54.293	Cynoglossus_semilaevis
MGP_SPRETEiJ_G0017570	Tsr1	99	55.139	ENSCVAG00000000506	tsr1	99	55.947	Cyprinodon_variegatus
MGP_SPRETEiJ_G0017570	Tsr1	99	54.268	ENSDARG00000007744	tsr1	99	55.122	Danio_rerio
MGP_SPRETEiJ_G0017570	Tsr1	100	84.558	ENSDNOG00000004715	TSR1	100	86.197	Dasypus_novemcinctus
MGP_SPRETEiJ_G0017570	Tsr1	100	85.945	ENSDORG00000016371	-	100	85.945	Dipodomys_ordii
MGP_SPRETEiJ_G0017570	Tsr1	97	74.936	ENSDORG00000023234	-	100	74.936	Dipodomys_ordii
MGP_SPRETEiJ_G0017570	Tsr1	97	43.176	FBgn0037073	Tsr1	96	43.797	Drosophila_melanogaster
MGP_SPRETEiJ_G0017570	Tsr1	92	89.180	ENSETEG00000017534	TSR1	92	89.180	Echinops_telfairi
MGP_SPRETEiJ_G0017570	Tsr1	96	52.381	ENSEBUG00000013731	TSR1	98	52.381	Eptatretus_burgeri
MGP_SPRETEiJ_G0017570	Tsr1	100	86.443	ENSEASG00005009302	TSR1	97	86.940	Equus_asinus_asinus
MGP_SPRETEiJ_G0017570	Tsr1	100	86.194	ENSECAG00000009114	TSR1	100	86.692	Equus_caballus
MGP_SPRETEiJ_G0017570	Tsr1	99	54.077	ENSELUG00000020984	tsr1	95	54.293	Esox_lucius
MGP_SPRETEiJ_G0017570	Tsr1	100	85.448	ENSFCAG00000006313	TSR1	100	85.572	Felis_catus
MGP_SPRETEiJ_G0017570	Tsr1	99	69.012	ENSFALG00000006532	TSR1	99	70.000	Ficedula_albicollis
MGP_SPRETEiJ_G0017570	Tsr1	100	85.928	ENSFDAG00000006038	TSR1	100	85.679	Fukomys_damarensis
MGP_SPRETEiJ_G0017570	Tsr1	99	53.892	ENSFHEG00000003626	tsr1	99	55.210	Fundulus_heteroclitus
MGP_SPRETEiJ_G0017570	Tsr1	99	53.049	ENSGMOG00000010336	tsr1	99	54.136	Gadus_morhua
MGP_SPRETEiJ_G0017570	Tsr1	99	54.096	ENSGAFG00000012993	tsr1	99	54.414	Gambusia_affinis
MGP_SPRETEiJ_G0017570	Tsr1	99	53.865	ENSGACG00000010843	tsr1	99	54.701	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0017570	Tsr1	99	69.636	ENSGAGG00000025619	-	99	69.403	Gopherus_agassizii
MGP_SPRETEiJ_G0017570	Tsr1	100	85.839	ENSGGOG00000001704	TSR1	100	85.963	Gorilla_gorilla
MGP_SPRETEiJ_G0017570	Tsr1	99	55.210	ENSHBUG00000017904	tsr1	100	56.138	Haplochromis_burtoni
MGP_SPRETEiJ_G0017570	Tsr1	100	86.567	ENSHGLG00000012806	-	100	86.443	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0017570	Tsr1	97	77.091	ENSHGLG00000015688	-	99	77.091	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0017570	Tsr1	100	86.567	ENSHGLG00100015392	TSR1	100	86.443	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0017570	Tsr1	99	56.753	ENSHCOG00000001432	tsr1	99	56.506	Hippocampus_comes
MGP_SPRETEiJ_G0017570	Tsr1	99	54.578	ENSIPUG00000004618	tsr1	99	55.957	Ictalurus_punctatus
MGP_SPRETEiJ_G0017570	Tsr1	100	85.608	ENSSTOG00000011819	TSR1	100	86.228	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0017570	Tsr1	92	82.225	ENSJJAG00000019505	Tsr1	95	82.225	Jaculus_jaculus
MGP_SPRETEiJ_G0017570	Tsr1	99	54.041	ENSKMAG00000005763	tsr1	99	53.874	Kryptolebias_marmoratus
MGP_SPRETEiJ_G0017570	Tsr1	99	54.077	ENSLBEG00000021823	tsr1	99	54.753	Labrus_bergylta
MGP_SPRETEiJ_G0017570	Tsr1	99	64.251	ENSLACG00000002197	TSR1	99	64.251	Latimeria_chalumnae
MGP_SPRETEiJ_G0017570	Tsr1	90	57.675	ENSLOCG00000006491	TSR1	97	58.420	Lepisosteus_oculatus
MGP_SPRETEiJ_G0017570	Tsr1	100	86.335	ENSMFAG00000021330	TSR1	100	86.335	Macaca_fascicularis
MGP_SPRETEiJ_G0017570	Tsr1	100	85.963	ENSMMUG00000017519	TSR1	100	85.963	Macaca_mulatta
MGP_SPRETEiJ_G0017570	Tsr1	100	85.963	ENSMNEG00000031382	TSR1	100	85.963	Macaca_nemestrina
MGP_SPRETEiJ_G0017570	Tsr1	100	85.963	ENSMLEG00000036733	TSR1	100	85.963	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0017570	Tsr1	99	54.535	ENSMAMG00000017918	tsr1	99	54.970	Mastacembelus_armatus
MGP_SPRETEiJ_G0017570	Tsr1	99	55.263	ENSMZEG00005007477	tsr1	99	55.435	Maylandia_zebra
MGP_SPRETEiJ_G0017570	Tsr1	99	68.025	ENSMGAG00000005576	TSR1	99	69.012	Meleagris_gallopavo
MGP_SPRETEiJ_G0017570	Tsr1	100	87.313	ENSMICG00000012943	TSR1	100	87.438	Microcebus_murinus
MGP_SPRETEiJ_G0017570	Tsr1	100	90.423	ENSMOCG00000022764	Tsr1	100	91.045	Microtus_ochrogaster
MGP_SPRETEiJ_G0017570	Tsr1	99	54.435	ENSMMOG00000014280	tsr1	99	55.122	Mola_mola
MGP_SPRETEiJ_G0017570	Tsr1	100	77.612	ENSMODG00000010658	TSR1	100	77.612	Monodelphis_domestica
MGP_SPRETEiJ_G0017570	Tsr1	99	54.382	ENSMALG00000011681	tsr1	99	55.422	Monopterus_albus
MGP_SPRETEiJ_G0017570	Tsr1	100	98.132	MGP_CAROLIEiJ_G0016727	Tsr1	100	98.132	Mus_caroli
MGP_SPRETEiJ_G0017570	Tsr1	100	99.377	ENSMUSG00000038335	Tsr1	100	99.377	Mus_musculus
MGP_SPRETEiJ_G0017570	Tsr1	100	97.758	MGP_PahariEiJ_G0017864	Tsr1	100	97.758	Mus_pahari
MGP_SPRETEiJ_G0017570	Tsr1	82	86.280	ENSMPUG00000013000	TSR1	100	86.738	Mustela_putorius_furo
MGP_SPRETEiJ_G0017570	Tsr1	100	86.940	ENSMLUG00000003505	TSR1	100	87.313	Myotis_lucifugus
MGP_SPRETEiJ_G0017570	Tsr1	99	54.731	ENSNBRG00000020728	tsr1	99	54.874	Neolamprologus_brichardi
MGP_SPRETEiJ_G0017570	Tsr1	100	77.391	ENSNLEG00000017184	TSR1	100	80.199	Nomascus_leucogenys
MGP_SPRETEiJ_G0017570	Tsr1	100	72.671	ENSMEUG00000015828	TSR1	100	72.840	Notamacropus_eugenii
MGP_SPRETEiJ_G0017570	Tsr1	99	56.068	ENSONIG00000013131	tsr1	99	56.068	Oreochromis_niloticus
MGP_SPRETEiJ_G0017570	Tsr1	96	72.844	ENSOANG00000008637	TSR1	100	72.587	Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0017570	Tsr1	100	85.448	ENSOCUG00000014256	TSR1	100	85.821	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0017570	Tsr1	99	54.251	ENSORLG00000004926	tsr1	99	55.529	Oryzias_latipes
MGP_SPRETEiJ_G0017570	Tsr1	99	54.317	ENSORLG00020008792	tsr1	99	55.716	Oryzias_latipes_hni
MGP_SPRETEiJ_G0017570	Tsr1	99	54.132	ENSORLG00015013838	tsr1	99	55.409	Oryzias_latipes_hsok
MGP_SPRETEiJ_G0017570	Tsr1	99	54.403	ENSOMEG00000004830	tsr1	99	56.010	Oryzias_melastigma
MGP_SPRETEiJ_G0017570	Tsr1	100	85.802	ENSOGAG00000004492	TSR1	100	85.802	Otolemur_garnettii
MGP_SPRETEiJ_G0017570	Tsr1	100	88.184	ENSOARG00000015437	TSR1	97	88.682	Ovis_aries
MGP_SPRETEiJ_G0017570	Tsr1	100	85.590	ENSPPAG00000036355	TSR1	100	85.714	Pan_paniscus
MGP_SPRETEiJ_G0017570	Tsr1	100	85.199	ENSPPRG00000015519	-	100	85.323	Panthera_pardus
MGP_SPRETEiJ_G0017570	Tsr1	100	85.448	ENSPTIG00000010608	TSR1	100	85.572	Panthera_tigris_altaica
MGP_SPRETEiJ_G0017570	Tsr1	100	85.590	ENSPTRG00000008547	TSR1	100	85.714	Pan_troglodytes
MGP_SPRETEiJ_G0017570	Tsr1	100	82.733	ENSPANG00000024463	TSR1	100	83.106	Papio_anubis
MGP_SPRETEiJ_G0017570	Tsr1	99	54.321	ENSPKIG00000013972	tsr1	99	54.645	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0017570	Tsr1	88	68.644	ENSPSIG00000018258	TSR1	100	68.644	Pelodiscus_sinensis
MGP_SPRETEiJ_G0017570	Tsr1	99	55.966	ENSPMGG00000011577	tsr1	99	56.543	Periophthalmus_magnuspinnatus
MGP_SPRETEiJ_G0017570	Tsr1	100	91.781	ENSPEMG00000018033	Tsr1	100	91.781	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0017570	Tsr1	100	77.351	ENSPCIG00000009357	TSR1	98	77.475	Phascolarctos_cinereus
MGP_SPRETEiJ_G0017570	Tsr1	99	54.258	ENSPFOG00000004483	TSR1	99	56.000	Poecilia_formosa
MGP_SPRETEiJ_G0017570	Tsr1	99	55.049	ENSPLAG00000022320	tsr1	99	55.542	Poecilia_latipinna
MGP_SPRETEiJ_G0017570	Tsr1	99	53.772	ENSPMEG00000004577	tsr1	99	54.862	Poecilia_mexicana
MGP_SPRETEiJ_G0017570	Tsr1	97	54.332	ENSPREG00000010354	tsr1	95	54.635	Poecilia_reticulata
MGP_SPRETEiJ_G0017570	Tsr1	100	78.245	ENSPPYG00000007792	TSR1	100	77.750	Pongo_abelii
MGP_SPRETEiJ_G0017570	Tsr1	53	93.023	ENSPCAG00000012973	-	72	93.023	Procavia_capensis
MGP_SPRETEiJ_G0017570	Tsr1	100	86.692	ENSPCOG00000017928	TSR1	100	86.816	Propithecus_coquereli
MGP_SPRETEiJ_G0017570	Tsr1	100	86.301	ENSPVAG00000002162	TSR1	100	86.301	Pteropus_vampyrus
MGP_SPRETEiJ_G0017570	Tsr1	99	55.329	ENSPNYG00000016163	tsr1	99	55.502	Pundamilia_nyererei
MGP_SPRETEiJ_G0017570	Tsr1	99	54.221	ENSPNAG00000008659	tsr1	99	54.545	Pygocentrus_nattereri
MGP_SPRETEiJ_G0017570	Tsr1	100	93.159	ENSRNOG00000002980	Tsr1	100	94.527	Rattus_norvegicus
MGP_SPRETEiJ_G0017570	Tsr1	100	86.211	ENSRBIG00000040016	TSR1	100	86.211	Rhinopithecus_bieti
MGP_SPRETEiJ_G0017570	Tsr1	100	86.211	ENSRROG00000030361	TSR1	100	86.211	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0017570	Tsr1	96	31.196	YDL060W	-	98	31.073	Saccharomyces_cerevisiae
MGP_SPRETEiJ_G0017570	Tsr1	100	86.301	ENSSBOG00000020785	TSR1	100	86.301	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0017570	Tsr1	100	75.806	ENSSHAG00000011394	TSR1	100	75.806	Sarcophilus_harrisii
MGP_SPRETEiJ_G0017570	Tsr1	99	55.746	ENSSFOG00015005455	tsr1	99	56.098	Scleropages_formosus
MGP_SPRETEiJ_G0017570	Tsr1	99	53.726	ENSSMAG00000009504	tsr1	99	54.251	Scophthalmus_maximus
MGP_SPRETEiJ_G0017570	Tsr1	99	54.251	ENSSDUG00000012074	tsr1	99	54.633	Seriola_dumerili
MGP_SPRETEiJ_G0017570	Tsr1	99	54.688	ENSSLDG00000002031	tsr1	99	55.006	Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0017570	Tsr1	100	72.512	ENSSARG00000000759	TSR1	100	73.134	Sorex_araneus
MGP_SPRETEiJ_G0017570	Tsr1	99	67.528	ENSSPUG00000007042	TSR1	99	67.651	Sphenodon_punctatus
MGP_SPRETEiJ_G0017570	Tsr1	99	53.837	ENSSPAG00000021951	tsr1	99	55.689	Stegastes_partitus
MGP_SPRETEiJ_G0017570	Tsr1	100	87.687	ENSSSCG00000038534	TSR1	100	87.687	Sus_scrofa
MGP_SPRETEiJ_G0017570	Tsr1	90	70.959	ENSTGUG00000005883	TSR1	100	71.175	Taeniopygia_guttata
MGP_SPRETEiJ_G0017570	Tsr1	99	54.909	ENSTRUG00000004665	tsr1	99	56.204	Takifugu_rubripes
MGP_SPRETEiJ_G0017570	Tsr1	99	55.487	ENSTNIG00000016196	tsr1	99	55.734	Tetraodon_nigroviridis
MGP_SPRETEiJ_G0017570	Tsr1	67	92.308	ENSTBEG00000015275	-	67	92.308	Tupaia_belangeri
MGP_SPRETEiJ_G0017570	Tsr1	100	86.940	ENSTTRG00000001177	TSR1	100	86.940	Tursiops_truncatus
MGP_SPRETEiJ_G0017570	Tsr1	100	85.890	ENSUAMG00000025160	TSR1	100	85.890	Ursus_americanus
MGP_SPRETEiJ_G0017570	Tsr1	97	85.806	ENSUMAG00000009294	TSR1	98	86.658	Ursus_maritimus
MGP_SPRETEiJ_G0017570	Tsr1	84	82.912	ENSVPAG00000000228	TSR1	100	82.912	Vicugna_pacos
MGP_SPRETEiJ_G0017570	Tsr1	100	84.720	ENSVVUG00000021767	TSR1	100	85.093	Vulpes_vulpes
MGP_SPRETEiJ_G0017570	Tsr1	99	58.578	ENSXETG00000023797	tsr1	100	60.212	Xenopus_tropicalis
MGP_SPRETEiJ_G0017570	Tsr1	99	55.678	ENSXCOG00000009635	tsr1	99	56.495	Xiphophorus_couchianus
MGP_SPRETEiJ_G0017570	Tsr1	99	54.096	ENSXMAG00000001397	tsr1	96	55.018	Xiphophorus_maculatus