EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0017572 (Gene tree)
Gene ID: -
Gene Symbol: Smg6
Alias: -
Full Name: Smg-6 homolog%2C nonsense mediated mRNA decay factor (C. elegans)
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Plus strand
Length: 235591 bases
Position: chr11:74811884-75047474
Accession: 2144117
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0029604	EST1	PF10374.9	9.1e-14	1	1
MGP_SPRETEiJ_P0029604	EST1_DNA_bind	PF10373.9	2.5e-60	1	1
MGP_SPRETEiJ_P0029607	EST1_DNA_bind	PF10373.9	1.4e-10	1	1
MGP_SPRETEiJ_P0029604	PIN_4	PF13638.6	3.1e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0029606	-	2229	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0029607	-	714	-	MGP_SPRETEiJ_P0029607	238 (aa)	-	-
MGP_SPRETEiJ_T0029604	-	5853	-	MGP_SPRETEiJ_P0029604	1418 (aa)	-	-
MGP_SPRETEiJ_T0029605	-	4083	-	MGP_SPRETEiJ_P0029605	355 (aa)	-	-
MGP_SPRETEiJ_T0029608	-	475	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0029609	-	637	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0017572's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0017572's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0017572	Smg6	100	90.839	ENSG00000070366	SMG6	100	97.652	Homo_sapiens
MGP_SPRETEiJ_G0017572	Smg6	95	67.449	ENSAPOG00000019448	smg6	74	54.781	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0017572	Smg6	100	91.121	ENSAMEG00000007632	SMG6	100	91.121	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0017572	Smg6	96	64.789	ENSACIG00000012997	smg6	98	49.408	Amphilophus_citrinellus
MGP_SPRETEiJ_G0017572	Smg6	96	65.634	ENSAOCG00000002630	smg6	74	54.333	Amphiprion_ocellaris
MGP_SPRETEiJ_G0017572	Smg6	96	65.634	ENSAPEG00000019101	smg6	74	54.411	Amphiprion_percula
MGP_SPRETEiJ_G0017572	Smg6	98	63.361	ENSATEG00000006483	smg6	73	54.482	Anabas_testudineus
MGP_SPRETEiJ_G0017572	Smg6	98	70.950	ENSACAG00000011783	SMG6	99	56.398	Anolis_carolinensis
MGP_SPRETEiJ_G0017572	Smg6	100	90.980	ENSANAG00000035760	SMG6	100	90.980	Aotus_nancymaae
MGP_SPRETEiJ_G0017572	Smg6	96	65.070	ENSACLG00000005288	smg6	80	54.631	Astatotilapia_calliptera
MGP_SPRETEiJ_G0017572	Smg6	96	65.994	ENSAMXG00000017326	smg6	99	50.346	Astyanax_mexicanus
MGP_SPRETEiJ_G0017572	Smg6	100	91.261	ENSBTAG00000000267	SMG6	100	91.261	Bos_taurus
MGP_SPRETEiJ_G0017572	Smg6	100	91.050	ENSCJAG00000001820	SMG6	100	91.050	Callithrix_jacchus
MGP_SPRETEiJ_G0017572	Smg6	100	90.839	ENSCAFG00000019260	SMG6	100	90.839	Canis_familiaris
MGP_SPRETEiJ_G0017572	Smg6	100	90.839	ENSCAFG00020009770	SMG6	100	90.839	Canis_lupus_dingo
MGP_SPRETEiJ_G0017572	Smg6	97	95.942	ENSCHIG00000021998	SMG6	100	91.261	Capra_hircus
MGP_SPRETEiJ_G0017572	Smg6	100	90.698	ENSTSYG00000003406	SMG6	100	97.652	Carlito_syrichta
MGP_SPRETEiJ_G0017572	Smg6	98	76.259	ENSCAPG00000016197	SMG6	99	83.138	Cavia_aperea
MGP_SPRETEiJ_G0017572	Smg6	99	93.249	ENSCPOG00000014878	SMG6	99	93.249	Cavia_porcellus
MGP_SPRETEiJ_G0017572	Smg6	100	91.261	ENSCCAG00000035801	SMG6	100	91.261	Cebus_capucinus
MGP_SPRETEiJ_G0017572	Smg6	100	91.261	ENSCATG00000031956	SMG6	100	91.261	Cercocebus_atys
MGP_SPRETEiJ_G0017572	Smg6	100	93.697	ENSCLAG00000006748	SMG6	100	93.697	Chinchilla_lanigera
MGP_SPRETEiJ_G0017572	Smg6	100	91.614	ENSCSAG00000013800	SMG6	100	91.614	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0017572	Smg6	57	98.507	ENSCHOG00000005024	-	73	98.507	Choloepus_hoffmanni
MGP_SPRETEiJ_G0017572	Smg6	98	82.709	ENSCPBG00000020369	SMG6	100	71.905	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0017572	Smg6	68	35.260	ENSCING00000010099	-	99	35.305	Ciona_intestinalis
MGP_SPRETEiJ_G0017572	Smg6	96	93.860	ENSCANG00000031764	SMG6	100	97.260	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0017572	Smg6	67	98.326	ENSCGRG00001019595	Smg6	98	93.470	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0017572	Smg6	98	93.372	ENSCGRG00000007782	Smg6	100	88.753	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0017572	Smg6	96	63.202	ENSCSEG00000012757	smg6	90	51.991	Cynoglossus_semilaevis
MGP_SPRETEiJ_G0017572	Smg6	87	67.619	ENSCVAG00000012789	smg6	74	53.235	Cyprinodon_variegatus
MGP_SPRETEiJ_G0017572	Smg6	92	67.879	ENSDARG00000100481	smg6	90	56.035	Danio_rerio
MGP_SPRETEiJ_G0017572	Smg6	100	90.627	ENSDNOG00000048283	SMG6	100	90.627	Dasypus_novemcinctus
MGP_SPRETEiJ_G0017572	Smg6	96	94.737	ENSDORG00000016614	Smg6	94	97.297	Dipodomys_ordii
MGP_SPRETEiJ_G0017572	Smg6	93	100.000	ENSETEG00000016790	SMG6	93	100.000	Echinops_telfairi
MGP_SPRETEiJ_G0017572	Smg6	98	50.430	ENSEBUG00000005059	smg6	71	50.192	Eptatretus_burgeri
MGP_SPRETEiJ_G0017572	Smg6	99	91.390	ENSEASG00005009318	SMG6	99	91.390	Equus_asinus_asinus
MGP_SPRETEiJ_G0017572	Smg6	99	91.461	ENSECAG00000006519	SMG6	99	91.461	Equus_caballus
MGP_SPRETEiJ_G0017572	Smg6	100	80.550	ENSEEUG00000003493	SMG6	100	80.550	Erinaceus_europaeus
MGP_SPRETEiJ_G0017572	Smg6	91	68.693	ENSELUG00000005934	smg6	67	56.245	Esox_lucius
MGP_SPRETEiJ_G0017572	Smg6	100	91.684	ENSFCAG00000028817	SMG6	100	91.684	Felis_catus
MGP_SPRETEiJ_G0017572	Smg6	98	81.556	ENSFALG00000006538	SMG6	100	71.724	Ficedula_albicollis
MGP_SPRETEiJ_G0017572	Smg6	100	93.697	ENSFDAG00000015106	SMG6	100	93.697	Fukomys_damarensis
MGP_SPRETEiJ_G0017572	Smg6	87	68.571	ENSFHEG00000013282	smg6	74	53.271	Fundulus_heteroclitus
MGP_SPRETEiJ_G0017572	Smg6	83	56.459	ENSGMOG00000019077	smg6	58	68.224	Gadus_morhua
MGP_SPRETEiJ_G0017572	Smg6	98	80.692	ENSGALG00000003108	SMG6	98	71.548	Gallus_gallus
MGP_SPRETEiJ_G0017572	Smg6	87	68.571	ENSGAFG00000000379	smg6	74	53.406	Gambusia_affinis
MGP_SPRETEiJ_G0017572	Smg6	96	65.722	ENSGACG00000020521	smg6	100	52.193	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0017572	Smg6	98	82.133	ENSGAGG00000025617	SMG6	100	71.855	Gopherus_agassizii
MGP_SPRETEiJ_G0017572	Smg6	100	91.402	ENSGGOG00000017156	SMG6	100	91.402	Gorilla_gorilla
MGP_SPRETEiJ_G0017572	Smg6	96	65.070	ENSHBUG00000021311	smg6	74	54.788	Haplochromis_burtoni
MGP_SPRETEiJ_G0017572	Smg6	100	93.277	ENSHGLG00000012882	SMG6	100	93.277	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0017572	Smg6	100	93.277	ENSHGLG00100017815	SMG6	100	93.277	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0017572	Smg6	97	61.364	ENSHCOG00000008761	smg6	96	53.525	Hippocampus_comes
MGP_SPRETEiJ_G0017572	Smg6	97	66.857	ENSIPUG00000012493	smg6	75	55.404	Ictalurus_punctatus
MGP_SPRETEiJ_G0017572	Smg6	100	94.958	ENSSTOG00000028127	SMG6	100	94.958	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0017572	Smg6	98	96.830	ENSJJAG00000015367	Smg6	95	88.388	Jaculus_jaculus
MGP_SPRETEiJ_G0017572	Smg6	97	64.624	ENSKMAG00000000279	smg6	85	53.900	Kryptolebias_marmoratus
MGP_SPRETEiJ_G0017572	Smg6	96	65.634	ENSLBEG00000002184	smg6	73	53.566	Labrus_bergylta
MGP_SPRETEiJ_G0017572	Smg6	94	79.911	ENSLACG00000003276	SMG6	100	80.000	Latimeria_chalumnae
MGP_SPRETEiJ_G0017572	Smg6	77	82.909	ENSLACG00000000806	-	98	58.996	Latimeria_chalumnae
MGP_SPRETEiJ_G0017572	Smg6	97	68.300	ENSLOCG00000006448	smg6	86	59.968	Lepisosteus_oculatus
MGP_SPRETEiJ_G0017572	Smg6	96	94.298	ENSLAFG00000001261	SMG6	100	89.922	Loxodonta_africana
MGP_SPRETEiJ_G0017572	Smg6	100	91.473	ENSMFAG00000003394	SMG6	100	91.473	Macaca_fascicularis
MGP_SPRETEiJ_G0017572	Smg6	100	91.402	ENSMMUG00000023161	SMG6	100	91.402	Macaca_mulatta
MGP_SPRETEiJ_G0017572	Smg6	96	93.860	ENSMNEG00000044592	SMG6	100	86.920	Macaca_nemestrina
MGP_SPRETEiJ_G0017572	Smg6	93	97.368	ENSMLEG00000029353	SMG6	100	97.368	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0017572	Smg6	96	65.915	ENSMAMG00000020119	smg6	79	55.425	Mastacembelus_armatus
MGP_SPRETEiJ_G0017572	Smg6	96	65.070	ENSMZEG00005024736	smg6	74	54.488	Maylandia_zebra
MGP_SPRETEiJ_G0017572	Smg6	98	80.980	ENSMGAG00000005401	-	99	65.563	Meleagris_gallopavo
MGP_SPRETEiJ_G0017572	Smg6	52	90.244	ENSMGAG00000017200	-	100	85.286	Meleagris_gallopavo
MGP_SPRETEiJ_G0017572	Smg6	96	96.943	ENSMAUG00000017203	-	99	96.943	Mesocricetus_auratus
MGP_SPRETEiJ_G0017572	Smg6	100	92.600	ENSMICG00000012913	SMG6	100	92.600	Microcebus_murinus
MGP_SPRETEiJ_G0017572	Smg6	99	95.763	ENSMOCG00000019924	-	99	95.763	Microtus_ochrogaster
MGP_SPRETEiJ_G0017572	Smg6	97	63.456	ENSMMOG00000010883	smg6	77	55.958	Mola_mola
MGP_SPRETEiJ_G0017572	Smg6	73	48.864	ENSMODG00000024460	-	99	41.879	Monodelphis_domestica
MGP_SPRETEiJ_G0017572	Smg6	73	48.864	ENSMODG00000024463	-	99	42.074	Monodelphis_domestica
MGP_SPRETEiJ_G0017572	Smg6	97	91.775	ENSMODG00000010622	SMG6	100	85.443	Monodelphis_domestica
MGP_SPRETEiJ_G0017572	Smg6	81	45.641	ENSMODG00000024395	-	99	40.509	Monodelphis_domestica
MGP_SPRETEiJ_G0017572	Smg6	73	48.295	ENSMODG00000024410	-	99	41.487	Monodelphis_domestica
MGP_SPRETEiJ_G0017572	Smg6	97	66.017	ENSMALG00000001106	smg6	73	55.132	Monopterus_albus
MGP_SPRETEiJ_G0017572	Smg6	100	98.801	MGP_CAROLIEiJ_G0016729	Smg6	100	98.801	Mus_caroli
MGP_SPRETEiJ_G0017572	Smg6	100	99.718	ENSMUSG00000038290	Smg6	100	99.718	Mus_musculus
MGP_SPRETEiJ_G0017572	Smg6	100	99.160	MGP_PahariEiJ_G0017866	Smg6	100	99.160	Mus_pahari
MGP_SPRETEiJ_G0017572	Smg6	98	94.813	ENSMPUG00000013046	SMG6	100	91.121	Mustela_putorius_furo
MGP_SPRETEiJ_G0017572	Smg6	100	90.486	ENSMLUG00000005739	SMG6	100	90.486	Myotis_lucifugus
MGP_SPRETEiJ_G0017572	Smg6	100	94.538	ENSNGAG00000007287	Smg6	100	94.538	Nannospalax_galili
MGP_SPRETEiJ_G0017572	Smg6	96	65.070	ENSNBRG00000009511	smg6	80	54.203	Neolamprologus_brichardi
MGP_SPRETEiJ_G0017572	Smg6	96	93.421	ENSNLEG00000017171	SMG6	100	97.456	Nomascus_leucogenys
MGP_SPRETEiJ_G0017572	Smg6	97	90.909	ENSMEUG00000015804	SMG6	100	81.897	Notamacropus_eugenii
MGP_SPRETEiJ_G0017572	Smg6	72	88.953	ENSOPRG00000000579	SMG6	83	98.421	Ochotona_princeps
MGP_SPRETEiJ_G0017572	Smg6	96	93.450	ENSODEG00000008038	SMG6	100	85.011	Octodon_degus
MGP_SPRETEiJ_G0017572	Smg6	96	65.363	ENSONIG00000005594	smg6	100	51.303	Oreochromis_niloticus
MGP_SPRETEiJ_G0017572	Smg6	98	87.320	ENSOANG00000021103	-	100	86.504	Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0017572	Smg6	100	91.344	ENSOCUG00000013018	SMG6	100	91.485	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0017572	Smg6	95	64.740	ENSORLG00000003317	smg6	74	53.997	Oryzias_latipes
MGP_SPRETEiJ_G0017572	Smg6	95	64.740	ENSORLG00020015343	smg6	74	53.816	Oryzias_latipes_hni
MGP_SPRETEiJ_G0017572	Smg6	95	65.029	ENSORLG00015020454	smg6	74	53.955	Oryzias_latipes_hsok
MGP_SPRETEiJ_G0017572	Smg6	97	63.324	ENSOMEG00000010838	smg6	75	53.339	Oryzias_melastigma
MGP_SPRETEiJ_G0017572	Smg6	100	91.972	ENSOGAG00000004483	SMG6	100	91.972	Otolemur_garnettii
MGP_SPRETEiJ_G0017572	Smg6	97	95.942	ENSOARG00000015076	SMG6	100	91.047	Ovis_aries
MGP_SPRETEiJ_G0017572	Smg6	100	91.332	ENSPPAG00000043296	SMG6	100	91.332	Pan_paniscus
MGP_SPRETEiJ_G0017572	Smg6	100	91.825	ENSPPRG00000014581	SMG6	100	91.825	Panthera_pardus
MGP_SPRETEiJ_G0017572	Smg6	95	94.985	ENSPTIG00000008925	SMG6	100	98.043	Panthera_tigris_altaica
MGP_SPRETEiJ_G0017572	Smg6	100	91.332	ENSPTRG00000008544	SMG6	100	97.652	Pan_troglodytes
MGP_SPRETEiJ_G0017572	Smg6	100	91.473	ENSPANG00000024588	SMG6	100	91.473	Papio_anubis
MGP_SPRETEiJ_G0017572	Smg6	98	81.844	ENSPSIG00000006660	SMG6	96	69.725	Pelodiscus_sinensis
MGP_SPRETEiJ_G0017572	Smg6	91	67.568	ENSPMGG00000000844	smg6	100	49.049	Periophthalmus_magnuspinnatus
MGP_SPRETEiJ_G0017572	Smg6	100	95.487	ENSPEMG00000020707	Smg6	98	98.253	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0017572	Smg6	87	68.889	ENSPFOG00000012035	smg6	100	50.167	Poecilia_formosa
MGP_SPRETEiJ_G0017572	Smg6	87	68.571	ENSPLAG00000017660	smg6	74	53.302	Poecilia_latipinna
MGP_SPRETEiJ_G0017572	Smg6	87	68.889	ENSPMEG00000000258	smg6	74	53.616	Poecilia_mexicana
MGP_SPRETEiJ_G0017572	Smg6	87	68.889	ENSPREG00000010066	smg6	74	53.406	Poecilia_reticulata
MGP_SPRETEiJ_G0017572	Smg6	100	86.006	ENSPPYG00000007790	SMG6	100	86.006	Pongo_abelii
MGP_SPRETEiJ_G0017572	Smg6	95	91.740	ENSPCAG00000000552	SMG6	100	85.976	Procavia_capensis
MGP_SPRETEiJ_G0017572	Smg6	97	95.671	ENSPCOG00000020925	SMG6	100	92.107	Propithecus_coquereli
MGP_SPRETEiJ_G0017572	Smg6	96	92.982	ENSPVAG00000002159	SMG6	86	100.000	Pteropus_vampyrus
MGP_SPRETEiJ_G0017572	Smg6	96	65.070	ENSPNYG00000024151	smg6	79	56.412	Pundamilia_nyererei
MGP_SPRETEiJ_G0017572	Smg6	100	51.573	ENSPNAG00000015480	smg6	87	63.243	Pygocentrus_nattereri
MGP_SPRETEiJ_G0017572	Smg6	100	98.310	ENSRNOG00000003041	Smg6	100	97.461	Rattus_norvegicus
MGP_SPRETEiJ_G0017572	Smg6	100	91.473	ENSRBIG00000024746	SMG6	100	91.473	Rhinopithecus_bieti
MGP_SPRETEiJ_G0017572	Smg6	100	91.543	ENSRROG00000030423	SMG6	100	96.869	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0017572	Smg6	100	91.050	ENSSBOG00000022518	SMG6	100	89.429	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0017572	Smg6	98	90.202	ENSSHAG00000010045	SMG6	98	85.140	Sarcophilus_harrisii
MGP_SPRETEiJ_G0017572	Smg6	87	41.784	ENSSHAG00000000380	-	99	39.130	Sarcophilus_harrisii
MGP_SPRETEiJ_G0017572	Smg6	97	66.193	ENSSFOG00015005436	smg6	70	57.098	Scleropages_formosus
MGP_SPRETEiJ_G0017572	Smg6	96	66.761	ENSSMAG00000019777	smg6	77	53.289	Scophthalmus_maximus
MGP_SPRETEiJ_G0017572	Smg6	97	65.181	ENSSDUG00000016412	smg6	79	52.520	Seriola_dumerili
MGP_SPRETEiJ_G0017572	Smg6	97	65.181	ENSSLDG00000020747	smg6	82	51.504	Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0017572	Smg6	94	82.222	ENSSPUG00000007152	SMG6	99	69.456	Sphenodon_punctatus
MGP_SPRETEiJ_G0017572	Smg6	96	64.225	ENSSPAG00000015633	smg6	74	54.160	Stegastes_partitus
MGP_SPRETEiJ_G0017572	Smg6	100	90.839	ENSSSCG00000017826	SMG6	100	90.839	Sus_scrofa
MGP_SPRETEiJ_G0017572	Smg6	98	80.403	ENSTGUG00000005836	SMG6	100	71.980	Taeniopygia_guttata
MGP_SPRETEiJ_G0017572	Smg6	98	62.865	ENSTRUG00000000358	smg6	100	47.534	Takifugu_rubripes
MGP_SPRETEiJ_G0017572	Smg6	92	67.771	ENSTNIG00000016164	smg6	100	49.309	Tetraodon_nigroviridis
MGP_SPRETEiJ_G0017572	Smg6	97	97.794	ENSTBEG00000011424	SMG6	100	87.165	Tupaia_belangeri
MGP_SPRETEiJ_G0017572	Smg6	96	93.860	ENSTTRG00000001175	SMG6	91	91.364	Tursiops_truncatus
MGP_SPRETEiJ_G0017572	Smg6	100	91.421	ENSUAMG00000025152	SMG6	100	91.354	Ursus_americanus
MGP_SPRETEiJ_G0017572	Smg6	95	95.549	ENSUMAG00000009306	SMG6	100	91.552	Ursus_maritimus
MGP_SPRETEiJ_G0017572	Smg6	85	92.593	ENSVPAG00000000225	SMG6	88	92.593	Vicugna_pacos
MGP_SPRETEiJ_G0017572	Smg6	100	90.486	ENSVVUG00000021727	SMG6	100	90.486	Vulpes_vulpes
MGP_SPRETEiJ_G0017572	Smg6	98	69.164	ENSXETG00000023799	SMG6	100	59.520	Xenopus_tropicalis
MGP_SPRETEiJ_G0017572	Smg6	87	67.508	ENSXCOG00000009867	smg6	74	54.480	Xiphophorus_couchianus
MGP_SPRETEiJ_G0017572	Smg6	87	67.937	ENSXMAG00000010321	smg6	74	53.714	Xiphophorus_maculatus