EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0018215 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Minus strand
Length: 13480 bases
Position: chr11:116237132-116250611
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0032228	zf-CCCH	PF00642.24	2.6e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0032225	-	1236	-	MGP_SPRETEiJ_P0032225	190 (aa)	-	-
MGP_SPRETEiJ_T0032226	-	1214	-	MGP_SPRETEiJ_P0032226	228 (aa)	-	-
MGP_SPRETEiJ_T0032227	-	1363	-	MGP_SPRETEiJ_P0032227	275 (aa)	-	-
MGP_SPRETEiJ_T0032228	-	1124	-	MGP_SPRETEiJ_P0032228	153 (aa)	-	-
MGP_SPRETEiJ_T0032229	-	998	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0018215's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0018215's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_SPRETEiJ_G0018215	-	77	65.254	MGP_SPRETEiJ_G0029013	Cpsf4	57	65.254

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0018215	-	82	67.200	ENSG00000187959	CPSF4L	68	73.786	Homo_sapiens
MGP_SPRETEiJ_G0018215	-	74	47.788	ENSANAG00000026558	-	74	47.788	Aotus_nancymaae
MGP_SPRETEiJ_G0018215	-	82	54.400	ENSCJAG00000019911	CPSF4L	77	57.273	Callithrix_jacchus
MGP_SPRETEiJ_G0018215	-	75	71.930	ENSCATG00000044555	CPSF4L	82	68.468	Cercocebus_atys
MGP_SPRETEiJ_G0018215	-	75	71.930	ENSCSAG00000004429	CPSF4L	63	71.930	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0018215	-	75	71.930	ENSCANG00000035042	CPSF4L	83	59.574	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0018215	-	83	81.102	ENSCGRG00001020079	Cpsf4l	71	81.102	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0018215	-	83	81.102	ENSCGRG00000010419	Cpsf4l	71	81.102	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0018215	-	86	67.176	ENSDNOG00000014458	CPSF4L	96	65.000	Dasypus_novemcinctus
MGP_SPRETEiJ_G0018215	-	75	71.053	ENSEASG00005018763	CPSF4L	68	71.053	Equus_asinus_asinus
MGP_SPRETEiJ_G0018215	-	75	71.053	ENSECAG00000024813	CPSF4L	68	71.053	Equus_caballus
MGP_SPRETEiJ_G0018215	-	83	70.079	ENSFCAG00000004745	CPSF4L	50	70.079	Felis_catus
MGP_SPRETEiJ_G0018215	-	82	67.200	ENSGGOG00000026659	CPSF4L	70	71.963	Gorilla_gorilla
MGP_SPRETEiJ_G0018215	-	73	75.000	ENSSTOG00000001849	CPSF4L	64	75.000	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0018215	-	76	70.940	ENSLAFG00000010697	CPSF4L	66	70.940	Loxodonta_africana
MGP_SPRETEiJ_G0018215	-	75	71.930	ENSMFAG00000037840	CPSF4L	79	68.468	Macaca_fascicularis
MGP_SPRETEiJ_G0018215	-	75	71.930	ENSMMUG00000001271	CPSF4L	79	68.468	Macaca_mulatta
MGP_SPRETEiJ_G0018215	-	75	71.930	ENSMNEG00000045419	CPSF4L	79	68.468	Macaca_nemestrina
MGP_SPRETEiJ_G0018215	-	82	66.400	ENSMLEG00000038527	CPSF4L	79	69.369	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0018215	-	75	81.739	ENSMAUG00000019519	-	69	81.739	Mesocricetus_auratus
MGP_SPRETEiJ_G0018215	-	73	74.107	ENSMICG00000007503	CPSF4L	64	74.107	Microcebus_murinus
MGP_SPRETEiJ_G0018215	-	54	80.488	ENSMOCG00000015313	-	57	80.488	Microtus_ochrogaster
MGP_SPRETEiJ_G0018215	-	73	72.321	ENSMODG00000025672	CPSF4L	69	72.321	Monodelphis_domestica
MGP_SPRETEiJ_G0018215	-	100	95.425	MGP_CAROLIEiJ_G0017369	-	100	95.425	Mus_caroli
MGP_SPRETEiJ_G0018215	-	100	96.732	ENSMUSG00000018727	Cpsf4l	100	96.732	Mus_musculus
MGP_SPRETEiJ_G0018215	-	82	93.651	MGP_PahariEiJ_G0018499	-	82	93.651	Mus_pahari
MGP_SPRETEiJ_G0018215	-	77	69.492	ENSMPUG00000014276	CPSF4L	70	69.492	Mustela_putorius_furo
MGP_SPRETEiJ_G0018215	-	75	70.175	ENSMLUG00000009617	CPSF4L	63	70.175	Myotis_lucifugus
MGP_SPRETEiJ_G0018215	-	73	83.036	ENSNGAG00000009325	-	65	83.036	Nannospalax_galili
MGP_SPRETEiJ_G0018215	-	82	67.200	ENSNLEG00000001420	CPSF4L	70	71.963	Nomascus_leucogenys
MGP_SPRETEiJ_G0018215	-	66	71.287	ENSMEUG00000004051	-	99	71.287	Notamacropus_eugenii
MGP_SPRETEiJ_G0018215	-	76	61.538	ENSOPRG00000007484	-	87	61.538	Ochotona_princeps
MGP_SPRETEiJ_G0018215	-	82	64.800	ENSOCUG00000026495	CPSF4L	55	64.800	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0018215	-	82	67.200	ENSPPAG00000037000	-	84	67.200	Pan_paniscus
MGP_SPRETEiJ_G0018215	-	67	71.845	ENSPPRG00000001058	CPSF4L	67	71.845	Panthera_pardus
MGP_SPRETEiJ_G0018215	-	67	71.845	ENSPTIG00000012676	CPSF4L	67	71.845	Panthera_tigris_altaica
MGP_SPRETEiJ_G0018215	-	82	67.200	ENSPTRG00000009598	CPSF4L	70	71.963	Pan_troglodytes
MGP_SPRETEiJ_G0018215	-	82	66.400	ENSPANG00000020331	CPSF4L	70	71.028	Papio_anubis
MGP_SPRETEiJ_G0018215	-	100	77.778	ENSPEMG00000011680	Cpsf4l	100	77.778	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0018215	-	75	70.175	ENSPCIG00000001889	CPSF4L	66	70.175	Phascolarctos_cinereus
MGP_SPRETEiJ_G0018215	-	70	71.963	ENSPPYG00000008589	-	70	71.963	Pongo_abelii
MGP_SPRETEiJ_G0018215	-	71	74.312	ENSPCOG00000021801	CPSF4L	75	70.000	Propithecus_coquereli
MGP_SPRETEiJ_G0018215	-	67	68.932	ENSPVAG00000006736	CPSF4L	69	68.932	Pteropus_vampyrus
MGP_SPRETEiJ_G0018215	-	82	65.600	ENSRBIG00000029048	CPSF4L	83	59.574	Rhinopithecus_bieti
MGP_SPRETEiJ_G0018215	-	82	64.800	ENSRROG00000037051	CPSF4L	69	64.800	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0018215	-	56	70.588	ENSTBEG00000012716	-	94	70.588	Tupaia_belangeri
MGP_SPRETEiJ_G0018215	-	70	72.897	ENSTTRG00000005243	CPSF4L	71	72.897	Tursiops_truncatus
MGP_SPRETEiJ_G0018215	-	53	74.074	ENSUAMG00000007728	CPSF4L	52	74.074	Ursus_americanus
MGP_SPRETEiJ_G0018215	-	53	74.074	ENSUMAG00000007869	CPSF4L	52	74.074	Ursus_maritimus