EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0018262 (Gene tree)
Gene ID: -
Gene Symbol: Tsen54
Alias: 0610034P02Rik
Full Name: tRNA splicing endonuclease subunit 54
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Plus strand
Length: 10087 bases
Position: chr11:118459741-118469827
Accession: 1923515
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0032444	tRNA_int_end_N2	PF12928.7	1e-18	1	1
MGP_SPRETEiJ_P0032445	tRNA_int_end_N2	PF12928.7	1.2e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0032451	-	494	-	MGP_SPRETEiJ_P0032451	164 (aa)	-	-
MGP_SPRETEiJ_T0032450	-	968	-	MGP_SPRETEiJ_P0032450	153 (aa)	-	-
MGP_SPRETEiJ_T0032444	-	1867	-	MGP_SPRETEiJ_P0032444	486 (aa)	-	-
MGP_SPRETEiJ_T0032445	-	1984	-	MGP_SPRETEiJ_P0032445	525 (aa)	-	-
MGP_SPRETEiJ_T0032446	-	522	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0032447	-	858	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0032448	-	803	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0032449	-	825	-	MGP_SPRETEiJ_P0032449	275 (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0018262's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0018262's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0018262	Tsen54	100	80.418	ENSG00000182173	TSEN54	99	88.732	Homo_sapiens
MGP_SPRETEiJ_G0018262	Tsen54	97	46.718	ENSAPOG00000009659	tsen54	99	44.111	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0018262	Tsen54	99	76.792	ENSAMEG00000009414	TSEN54	99	77.358	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0018262	Tsen54	97	45.857	ENSAOCG00000000152	tsen54	95	45.857	Amphiprion_ocellaris
MGP_SPRETEiJ_G0018262	Tsen54	97	45.665	ENSAPEG00000018931	tsen54	94	45.665	Amphiprion_percula
MGP_SPRETEiJ_G0018262	Tsen54	97	44.084	ENSATEG00000019860	tsen54	97	44.571	Anabas_testudineus
MGP_SPRETEiJ_G0018262	Tsen54	86	52.928	ENSAPLG00000009419	TSEN54	100	52.928	Anas_platyrhynchos
MGP_SPRETEiJ_G0018262	Tsen54	99	53.030	ENSACAG00000006714	TSEN54	99	53.030	Anolis_carolinensis
MGP_SPRETEiJ_G0018262	Tsen54	99	79.769	ENSANAG00000024061	TSEN54	99	80.190	Aotus_nancymaae
MGP_SPRETEiJ_G0018262	Tsen54	97	45.665	ENSACLG00000019800	tsen54	96	45.873	Astatotilapia_calliptera
MGP_SPRETEiJ_G0018262	Tsen54	97	47.070	ENSAMXG00000006546	tsen54	96	47.070	Astyanax_mexicanus
MGP_SPRETEiJ_G0018262	Tsen54	100	79.057	ENSBTAG00000000824	TSEN54	100	79.849	Bos_taurus
MGP_SPRETEiJ_G0018262	Tsen54	99	78.227	ENSCJAG00000014278	TSEN54	99	78.667	Callithrix_jacchus
MGP_SPRETEiJ_G0018262	Tsen54	100	79.473	ENSCAFG00000004798	TSEN54	100	80.038	Canis_familiaris
MGP_SPRETEiJ_G0018262	Tsen54	100	79.473	ENSCAFG00020000312	TSEN54	100	80.038	Canis_lupus_dingo
MGP_SPRETEiJ_G0018262	Tsen54	100	80.381	ENSCHIG00000019908	TSEN54	100	80.381	Capra_hircus
MGP_SPRETEiJ_G0018262	Tsen54	86	75.165	ENSTSYG00000037439	TSEN54	100	75.824	Carlito_syrichta
MGP_SPRETEiJ_G0018262	Tsen54	99	78.805	ENSCCAG00000036624	TSEN54	99	78.857	Cebus_capucinus
MGP_SPRETEiJ_G0018262	Tsen54	97	80.273	ENSCATG00000042877	TSEN54	99	80.381	Cercocebus_atys
MGP_SPRETEiJ_G0018262	Tsen54	97	80.822	ENSCLAG00000002924	TSEN54	99	80.725	Chinchilla_lanigera
MGP_SPRETEiJ_G0018262	Tsen54	100	79.658	ENSCSAG00000004809	TSEN54	100	80.038	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0018262	Tsen54	99	55.576	ENSCPBG00000028071	TSEN54	99	55.224	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0018262	Tsen54	100	79.468	ENSCANG00000028053	TSEN54	100	79.468	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0018262	Tsen54	100	89.524	ENSCGRG00001020029	Tsen54	100	89.524	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0018262	Tsen54	84	88.462	ENSCGRG00000016289	Tsen54	100	88.462	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0018262	Tsen54	80	38.283	ENSCSEG00000020586	tsen54	99	38.283	Cynoglossus_semilaevis
MGP_SPRETEiJ_G0018262	Tsen54	80	42.958	ENSDARG00000036844	tsen54	99	44.316	Danio_rerio
MGP_SPRETEiJ_G0018262	Tsen54	100	74.576	ENSDNOG00000018452	TSEN54	100	76.460	Dasypus_novemcinctus
MGP_SPRETEiJ_G0018262	Tsen54	100	81.524	ENSDORG00000004073	Tsen54	100	81.524	Dipodomys_ordii
MGP_SPRETEiJ_G0018262	Tsen54	97	36.178	ENSEBUG00000005203	TSEN54	95	36.178	Eptatretus_burgeri
MGP_SPRETEiJ_G0018262	Tsen54	100	79.245	ENSEASG00005000579	TSEN54	100	79.245	Equus_asinus_asinus
MGP_SPRETEiJ_G0018262	Tsen54	100	79.434	ENSECAG00000004924	TSEN54	100	79.434	Equus_caballus
MGP_SPRETEiJ_G0018262	Tsen54	86	71.991	ENSEEUG00000008467	TSEN54	100	72.429	Erinaceus_europaeus
MGP_SPRETEiJ_G0018262	Tsen54	97	43.199	ENSELUG00000017703	tsen54	90	43.199	Esox_lucius
MGP_SPRETEiJ_G0018262	Tsen54	99	79.167	ENSFCAG00000023712	TSEN54	99	79.735	Felis_catus
MGP_SPRETEiJ_G0018262	Tsen54	95	52.381	ENSFALG00000001119	TSEN54	98	51.145	Ficedula_albicollis
MGP_SPRETEiJ_G0018262	Tsen54	86	80.401	ENSFDAG00000019090	TSEN54	99	80.401	Fukomys_damarensis
MGP_SPRETEiJ_G0018262	Tsen54	97	46.257	ENSFHEG00000005470	tsen54	96	46.257	Fundulus_heteroclitus
MGP_SPRETEiJ_G0018262	Tsen54	76	46.429	ENSGMOG00000013146	tsen54	92	46.429	Gadus_morhua
MGP_SPRETEiJ_G0018262	Tsen54	95	49.213	ENSGALG00000047163	TSEN54	98	49.213	Gallus_gallus
MGP_SPRETEiJ_G0018262	Tsen54	99	46.958	ENSGAFG00000005111	tsen54	99	46.768	Gambusia_affinis
MGP_SPRETEiJ_G0018262	Tsen54	96	44.208	ENSGACG00000014987	tsen54	99	44.208	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0018262	Tsen54	100	55.390	ENSGAGG00000006825	TSEN54	99	55.390	Gopherus_agassizii
MGP_SPRETEiJ_G0018262	Tsen54	97	79.724	ENSGGOG00000009417	TSEN54	100	80.118	Gorilla_gorilla
MGP_SPRETEiJ_G0018262	Tsen54	87	43.856	ENSHBUG00000018296	tsen54	99	38.864	Haplochromis_burtoni
MGP_SPRETEiJ_G0018262	Tsen54	100	81.714	ENSHGLG00000007979	TSEN54	100	81.714	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0018262	Tsen54	100	80.762	ENSHGLG00100005497	TSEN54	100	80.762	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0018262	Tsen54	80	42.553	ENSHCOG00000007481	tsen54	99	42.553	Hippocampus_comes
MGP_SPRETEiJ_G0018262	Tsen54	99	41.199	ENSIPUG00000000590	tsen54	99	42.135	Ictalurus_punctatus
MGP_SPRETEiJ_G0018262	Tsen54	100	78.286	ENSSTOG00000012883	TSEN54	100	78.286	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0018262	Tsen54	100	82.922	ENSJJAG00000007365	Tsen54	100	82.922	Jaculus_jaculus
MGP_SPRETEiJ_G0018262	Tsen54	97	46.212	ENSKMAG00000006944	tsen54	97	46.212	Kryptolebias_marmoratus
MGP_SPRETEiJ_G0018262	Tsen54	97	42.912	ENSLBEG00000004199	tsen54	97	43.186	Labrus_bergylta
MGP_SPRETEiJ_G0018262	Tsen54	97	47.338	ENSLACG00000009497	TSEN54	100	47.338	Latimeria_chalumnae
MGP_SPRETEiJ_G0018262	Tsen54	97	46.314	ENSLOCG00000011191	tsen54	97	47.148	Lepisosteus_oculatus
MGP_SPRETEiJ_G0018262	Tsen54	99	73.913	ENSLAFG00000011655	TSEN54	99	73.913	Loxodonta_africana
MGP_SPRETEiJ_G0018262	Tsen54	100	79.848	ENSMFAG00000000712	TSEN54	100	80.228	Macaca_fascicularis
MGP_SPRETEiJ_G0018262	Tsen54	100	79.658	ENSMNEG00000029199	TSEN54	100	80.038	Macaca_nemestrina
MGP_SPRETEiJ_G0018262	Tsen54	86	78.540	ENSMLEG00000044168	TSEN54	88	78.982	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0018262	Tsen54	98	44.168	ENSMAMG00000019773	tsen54	98	44.595	Mastacembelus_armatus
MGP_SPRETEiJ_G0018262	Tsen54	97	45.665	ENSMZEG00005000884	tsen54	96	45.873	Maylandia_zebra
MGP_SPRETEiJ_G0018262	Tsen54	99	49.251	ENSMGAG00000009556	TSEN54	99	49.251	Meleagris_gallopavo
MGP_SPRETEiJ_G0018262	Tsen54	100	89.143	ENSMAUG00000016838	Tsen54	100	89.143	Mesocricetus_auratus
MGP_SPRETEiJ_G0018262	Tsen54	100	78.327	ENSMICG00000044012	TSEN54	100	79.087	Microcebus_murinus
MGP_SPRETEiJ_G0018262	Tsen54	100	90.095	ENSMOCG00000021585	Tsen54	100	90.095	Microtus_ochrogaster
MGP_SPRETEiJ_G0018262	Tsen54	73	63.636	ENSMMOG00000020189	tsen54	85	63.636	Mola_mola
MGP_SPRETEiJ_G0018262	Tsen54	98	64.972	ENSMODG00000007438	TSEN54	98	64.935	Monodelphis_domestica
MGP_SPRETEiJ_G0018262	Tsen54	97	44.000	ENSMALG00000020573	tsen54	97	43.962	Monopterus_albus
MGP_SPRETEiJ_G0018262	Tsen54	100	97.333	MGP_CAROLIEiJ_G0017417	Tsen54	100	97.333	Mus_caroli
MGP_SPRETEiJ_G0018262	Tsen54	100	99.048	ENSMUSG00000020781	Tsen54	100	99.048	Mus_musculus
MGP_SPRETEiJ_G0018262	Tsen54	100	95.885	MGP_PahariEiJ_G0018547	Tsen54	100	95.885	Mus_pahari
MGP_SPRETEiJ_G0018262	Tsen54	100	77.966	ENSMPUG00000013870	TSEN54	100	78.343	Mustela_putorius_furo
MGP_SPRETEiJ_G0018262	Tsen54	100	75.518	ENSMLUG00000015298	TSEN54	100	76.083	Myotis_lucifugus
MGP_SPRETEiJ_G0018262	Tsen54	100	84.979	ENSNGAG00000015673	Tsen54	100	84.979	Nannospalax_galili
MGP_SPRETEiJ_G0018262	Tsen54	89	61.915	ENSMEUG00000011908	TSEN54	100	61.915	Notamacropus_eugenii
MGP_SPRETEiJ_G0018262	Tsen54	100	72.865	ENSOPRG00000012513	TSEN54	100	72.865	Ochotona_princeps
MGP_SPRETEiJ_G0018262	Tsen54	97	45.507	ENSONIG00000009543	tsen54	96	45.507	Oreochromis_niloticus
MGP_SPRETEiJ_G0018262	Tsen54	99	70.919	ENSOCUG00000009875	TSEN54	99	72.045	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0018262	Tsen54	97	44.576	ENSORLG00000000852	tsen54	97	44.576	Oryzias_latipes
MGP_SPRETEiJ_G0018262	Tsen54	97	44.576	ENSORLG00020018221	tsen54	97	44.576	Oryzias_latipes_hni
MGP_SPRETEiJ_G0018262	Tsen54	97	44.379	ENSORLG00015009413	tsen54	98	44.379	Oryzias_latipes_hsok
MGP_SPRETEiJ_G0018262	Tsen54	97	44.773	ENSOMEG00000014402	tsen54	94	44.773	Oryzias_melastigma
MGP_SPRETEiJ_G0018262	Tsen54	100	74.715	ENSOGAG00000001442	TSEN54	100	74.715	Otolemur_garnettii
MGP_SPRETEiJ_G0018262	Tsen54	86	74.561	ENSOARG00000010361	TSEN54	100	75.492	Ovis_aries
MGP_SPRETEiJ_G0018262	Tsen54	94	79.435	ENSPPAG00000043519	TSEN54	100	79.435	Pan_paniscus
MGP_SPRETEiJ_G0018262	Tsen54	99	78.977	ENSPPRG00000009162	TSEN54	99	79.545	Panthera_pardus
MGP_SPRETEiJ_G0018262	Tsen54	86	77.434	ENSPTIG00000019312	TSEN54	96	77.876	Panthera_tigris_altaica
MGP_SPRETEiJ_G0018262	Tsen54	100	80.228	ENSPTRG00000009646	TSEN54	100	80.608	Pan_troglodytes
MGP_SPRETEiJ_G0018262	Tsen54	99	79.619	ENSPANG00000020133	TSEN54	99	80.000	Papio_anubis
MGP_SPRETEiJ_G0018262	Tsen54	97	45.750	ENSPKIG00000023018	tsen54	100	46.014	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0018262	Tsen54	80	52.535	ENSPSIG00000012807	TSEN54	99	52.535	Pelodiscus_sinensis
MGP_SPRETEiJ_G0018262	Tsen54	92	35.685	ENSPMGG00000019578	tsen54	99	35.685	Periophthalmus_magnuspinnatus
MGP_SPRETEiJ_G0018262	Tsen54	100	89.143	ENSPEMG00000014857	Tsen54	100	89.143	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0018262	Tsen54	99	46.617	ENSPFOG00000022740	tsen54	99	46.992	Poecilia_formosa
MGP_SPRETEiJ_G0018262	Tsen54	99	46.692	ENSPLAG00000014847	tsen54	99	47.070	Poecilia_latipinna
MGP_SPRETEiJ_G0018262	Tsen54	99	46.503	ENSPMEG00000022876	tsen54	99	46.881	Poecilia_mexicana
MGP_SPRETEiJ_G0018262	Tsen54	99	45.591	ENSPREG00000013090	tsen54	99	45.966	Poecilia_reticulata
MGP_SPRETEiJ_G0018262	Tsen54	91	74.530	ENSPPYG00000008629	TSEN54	100	74.739	Pongo_abelii
MGP_SPRETEiJ_G0018262	Tsen54	95	67.787	ENSPCAG00000002093	TSEN54	99	67.787	Procavia_capensis
MGP_SPRETEiJ_G0018262	Tsen54	99	80.306	ENSPCOG00000027880	TSEN54	100	80.989	Propithecus_coquereli
MGP_SPRETEiJ_G0018262	Tsen54	100	79.661	ENSPVAG00000008446	TSEN54	100	79.661	Pteropus_vampyrus
MGP_SPRETEiJ_G0018262	Tsen54	92	44.869	ENSPNYG00000010217	tsen54	99	44.578	Pundamilia_nyererei
MGP_SPRETEiJ_G0018262	Tsen54	97	44.569	ENSPNAG00000003770	tsen54	97	44.569	Pygocentrus_nattereri
MGP_SPRETEiJ_G0018262	Tsen54	100	92.952	ENSRNOG00000004598	Tsen54	100	92.952	Rattus_norvegicus
MGP_SPRETEiJ_G0018262	Tsen54	100	79.848	ENSRBIG00000043040	TSEN54	100	79.848	Rhinopithecus_bieti
MGP_SPRETEiJ_G0018262	Tsen54	100	79.658	ENSRROG00000030797	TSEN54	100	79.658	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0018262	Tsen54	99	75.619	ENSSBOG00000013543	TSEN54	99	76.000	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0018262	Tsen54	99	64.060	ENSSHAG00000018127	TSEN54	98	64.060	Sarcophilus_harrisii
MGP_SPRETEiJ_G0018262	Tsen54	81	42.627	ENSSFOG00015004093	tsen54	100	42.857	Scleropages_formosus
MGP_SPRETEiJ_G0018262	Tsen54	79	60.714	ENSSMAG00000012449	tsen54	99	43.071	Scophthalmus_maximus
MGP_SPRETEiJ_G0018262	Tsen54	97	44.571	ENSSDUG00000021506	tsen54	97	44.571	Seriola_dumerili
MGP_SPRETEiJ_G0018262	Tsen54	97	44.571	ENSSLDG00000016303	tsen54	97	44.571	Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0018262	Tsen54	86	50.939	ENSSPUG00000008988	TSEN54	100	50.339	Sphenodon_punctatus
MGP_SPRETEiJ_G0018262	Tsen54	92	44.200	ENSSPAG00000008098	-	99	44.200	Stegastes_partitus
MGP_SPRETEiJ_G0018262	Tsen54	80	40.898	ENSSPAG00000008047	tsen54	99	40.898	Stegastes_partitus
MGP_SPRETEiJ_G0018262	Tsen54	100	78.719	ENSSSCG00000036852	TSEN54	100	79.284	Sus_scrofa
MGP_SPRETEiJ_G0018262	Tsen54	86	52.747	ENSTGUG00000008548	TSEN54	100	52.747	Taeniopygia_guttata
MGP_SPRETEiJ_G0018262	Tsen54	97	45.793	ENSTRUG00000004230	tsen54	96	45.988	Takifugu_rubripes
MGP_SPRETEiJ_G0018262	Tsen54	99	44.592	ENSTNIG00000011281	tsen54	99	45.161	Tetraodon_nigroviridis
MGP_SPRETEiJ_G0018262	Tsen54	86	77.511	ENSTTRG00000015828	TSEN54	100	77.948	Tursiops_truncatus
MGP_SPRETEiJ_G0018262	Tsen54	81	75.814	ENSUAMG00000010045	TSEN54	100	75.814	Ursus_americanus
MGP_SPRETEiJ_G0018262	Tsen54	84	75.955	ENSUMAG00000008979	TSEN54	100	76.629	Ursus_maritimus
MGP_SPRETEiJ_G0018262	Tsen54	97	78.947	ENSVVUG00000011411	TSEN54	98	79.417	Vulpes_vulpes
MGP_SPRETEiJ_G0018262	Tsen54	99	49.341	ENSXETG00000012532	tsen54	99	70.833	Xenopus_tropicalis
MGP_SPRETEiJ_G0018262	Tsen54	97	43.222	ENSXCOG00000018245	tsen54	99	43.222	Xiphophorus_couchianus
MGP_SPRETEiJ_G0018262	Tsen54	99	46.067	ENSXMAG00000018818	tsen54	99	46.067	Xiphophorus_maculatus