EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0018309 (Gene tree)
Gene ID: -
Gene Symbol: Tnrc6c
Alias: 9930033H14Rik
Full Name: trinucleotide repeat containing 6C
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Plus strand
Length: 118738 bases
Position: chr11:120441706-120560443
Accession: 2443265
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0032707	Ago_hook	PF10427.9	1.3e-23	1	1
MGP_SPRETEiJ_P0032703	Ago_hook	PF10427.9	2.3e-23	1	1
MGP_SPRETEiJ_P0032705	Ago_hook	PF10427.9	2.3e-23	1	1
MGP_SPRETEiJ_P0032707	RRM_1	PF00076.22	0.00042	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0032703	-	8712	-	MGP_SPRETEiJ_P0032703	1900 (aa)	-	-
MGP_SPRETEiJ_T0032707	-	6612	-	MGP_SPRETEiJ_P0032707	1732 (aa)	-	-
MGP_SPRETEiJ_T0032706	-	5760	-	MGP_SPRETEiJ_P0032706	1919 (aa)	-	-
MGP_SPRETEiJ_T0032705	-	8850	-	MGP_SPRETEiJ_P0032705	1900 (aa)	-	-
MGP_SPRETEiJ_T0032704	-	11571	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0032709	-	1805	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0032708	-	743	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0018309's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0018309's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_SPRETEiJ_G0018309	Tnrc6c	99	42.315	MGP_SPRETEiJ_G0031539	Tnrc6a	98	44.347
MGP_SPRETEiJ_G0018309	Tnrc6c	99	36.156	MGP_SPRETEiJ_G0020941	Tnrc6b	96	37.308

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0018309	Tnrc6c	100	88.565	ENSG00000078687	TNRC6C	100	91.065	Homo_sapiens
MGP_SPRETEiJ_G0018309	Tnrc6c	77	54.571	ENSAPOG00000019749	tnrc6c1	98	49.356	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0018309	Tnrc6c	99	85.476	ENSAMEG00000013756	TNRC6C	99	85.810	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0018309	Tnrc6c	94	50.796	ENSACIG00000008075	tnrc6c1	98	51.675	Amphilophus_citrinellus
MGP_SPRETEiJ_G0018309	Tnrc6c	75	68.387	ENSAOCG00000023968	tnrc6c1	99	48.374	Amphiprion_ocellaris
MGP_SPRETEiJ_G0018309	Tnrc6c	77	54.140	ENSAPEG00000009020	tnrc6c1	99	48.627	Amphiprion_percula
MGP_SPRETEiJ_G0018309	Tnrc6c	100	82.618	ENSAPLG00000005456	TNRC6C	100	81.776	Anas_platyrhynchos
MGP_SPRETEiJ_G0018309	Tnrc6c	100	83.521	ENSACAG00000016198	TNRC6C	98	82.396	Anolis_carolinensis
MGP_SPRETEiJ_G0018309	Tnrc6c	100	88.166	ENSANAG00000021554	TNRC6C	100	90.882	Aotus_nancymaae
MGP_SPRETEiJ_G0018309	Tnrc6c	99	46.831	ENSACLG00000000424	tnrc6c1	99	46.432	Astatotilapia_calliptera
MGP_SPRETEiJ_G0018309	Tnrc6c	100	85.329	ENSBTAG00000018658	TNRC6C	100	87.870	Bos_taurus
MGP_SPRETEiJ_G0018309	Tnrc6c	100	88.278	ENSCJAG00000019431	TNRC6C	100	90.705	Callithrix_jacchus
MGP_SPRETEiJ_G0018309	Tnrc6c	99	87.725	ENSCAFG00000005224	TNRC6C	99	87.240	Canis_familiaris
MGP_SPRETEiJ_G0018309	Tnrc6c	99	89.341	ENSCAFG00020006661	TNRC6C	100	88.981	Canis_lupus_dingo
MGP_SPRETEiJ_G0018309	Tnrc6c	100	86.010	ENSCHIG00000026004	TNRC6C	100	85.857	Capra_hircus
MGP_SPRETEiJ_G0018309	Tnrc6c	97	90.087	ENSTSYG00000005403	TNRC6C	100	90.203	Carlito_syrichta
MGP_SPRETEiJ_G0018309	Tnrc6c	100	84.659	ENSCAPG00000007307	TNRC6C	99	85.401	Cavia_aperea
MGP_SPRETEiJ_G0018309	Tnrc6c	100	89.516	ENSCPOG00000000467	TNRC6C	100	89.919	Cavia_porcellus
MGP_SPRETEiJ_G0018309	Tnrc6c	100	88.671	ENSCCAG00000030524	TNRC6C	100	91.178	Cebus_capucinus
MGP_SPRETEiJ_G0018309	Tnrc6c	100	88.615	ENSCATG00000033135	TNRC6C	100	91.060	Cercocebus_atys
MGP_SPRETEiJ_G0018309	Tnrc6c	100	91.763	ENSCLAG00000011139	TNRC6C	99	90.899	Chinchilla_lanigera
MGP_SPRETEiJ_G0018309	Tnrc6c	99	88.952	ENSCSAG00000005167	TNRC6C	99	88.373	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0018309	Tnrc6c	76	89.633	ENSCHOG00000000088	TNRC6C	75	88.889	Choloepus_hoffmanni
MGP_SPRETEiJ_G0018309	Tnrc6c	100	85.977	ENSCPBG00000027960	TNRC6C	100	86.095	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0018309	Tnrc6c	100	88.334	ENSCANG00000041771	TNRC6C	100	90.764	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0018309	Tnrc6c	100	94.885	ENSCGRG00001022686	Tnrc6c	100	94.615	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0018309	Tnrc6c	100	95.323	ENSCGRG00000018041	Tnrc6c	100	94.615	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0018309	Tnrc6c	77	52.408	ENSCSEG00000012744	tnrc6c1	98	47.520	Cynoglossus_semilaevis
MGP_SPRETEiJ_G0018309	Tnrc6c	100	51.929	ENSDARG00000076847	tnrc6c1	99	52.446	Danio_rerio
MGP_SPRETEiJ_G0018309	Tnrc6c	100	86.678	ENSDNOG00000003247	TNRC6C	99	84.651	Dasypus_novemcinctus
MGP_SPRETEiJ_G0018309	Tnrc6c	100	86.575	ENSDORG00000004558	Tnrc6c	100	87.596	Dipodomys_ordii
MGP_SPRETEiJ_G0018309	Tnrc6c	90	82.000	ENSETEG00000005527	TNRC6C	90	82.087	Echinops_telfairi
MGP_SPRETEiJ_G0018309	Tnrc6c	97	89.745	ENSEASG00005004799	TNRC6C	100	89.864	Equus_asinus_asinus
MGP_SPRETEiJ_G0018309	Tnrc6c	100	89.522	ENSECAG00000012486	TNRC6C	99	88.853	Equus_caballus
MGP_SPRETEiJ_G0018309	Tnrc6c	96	88.325	ENSEEUG00000010008	TNRC6C	96	88.325	Erinaceus_europaeus
MGP_SPRETEiJ_G0018309	Tnrc6c	100	85.059	ENSFCAG00000028358	TNRC6C	100	87.832	Felis_catus
MGP_SPRETEiJ_G0018309	Tnrc6c	97	82.530	ENSFALG00000000848	TNRC6C	100	82.360	Ficedula_albicollis
MGP_SPRETEiJ_G0018309	Tnrc6c	100	90.726	ENSFDAG00000010368	TNRC6C	100	91.244	Fukomys_damarensis
MGP_SPRETEiJ_G0018309	Tnrc6c	99	46.934	ENSFHEG00000002936	tnrc6c1	99	46.353	Fundulus_heteroclitus
MGP_SPRETEiJ_G0018309	Tnrc6c	100	84.459	ENSGALG00000001725	TNRC6C	100	86.366	Gallus_gallus
MGP_SPRETEiJ_G0018309	Tnrc6c	99	48.488	ENSGAFG00000019019	tnrc6c1	99	47.622	Gambusia_affinis
MGP_SPRETEiJ_G0018309	Tnrc6c	94	52.748	ENSGACG00000012320	tnrc6c1	97	47.907	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0018309	Tnrc6c	100	85.411	ENSGAGG00000022043	TNRC6C	99	84.997	Gopherus_agassizii
MGP_SPRETEiJ_G0018309	Tnrc6c	100	87.948	ENSGGOG00000011304	TNRC6C	100	90.296	Gorilla_gorilla
MGP_SPRETEiJ_G0018309	Tnrc6c	97	50.000	ENSHBUG00000010846	tnrc6c1	99	46.544	Haplochromis_burtoni
MGP_SPRETEiJ_G0018309	Tnrc6c	100	91.187	ENSHGLG00000004809	TNRC6C	99	90.266	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0018309	Tnrc6c	100	90.482	ENSHGLG00100012597	TNRC6C	99	90.436	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0018309	Tnrc6c	99	52.454	ENSIPUG00000000818	tnrc6c1	98	51.535	Ictalurus_punctatus
MGP_SPRETEiJ_G0018309	Tnrc6c	100	90.736	ENSSTOG00000009101	TNRC6C	100	91.024	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0018309	Tnrc6c	100	91.322	ENSJJAG00000017055	Tnrc6c	99	90.633	Jaculus_jaculus
MGP_SPRETEiJ_G0018309	Tnrc6c	99	47.294	ENSKMAG00000021023	tnrc6c1	97	50.594	Kryptolebias_marmoratus
MGP_SPRETEiJ_G0018309	Tnrc6c	100	74.644	ENSLACG00000015283	TNRC6C	100	74.758	Latimeria_chalumnae
MGP_SPRETEiJ_G0018309	Tnrc6c	97	69.400	ENSLOCG00000013377	tnrc6c1	99	55.952	Lepisosteus_oculatus
MGP_SPRETEiJ_G0018309	Tnrc6c	100	89.048	ENSLAFG00000011122	TNRC6C	99	88.783	Loxodonta_africana
MGP_SPRETEiJ_G0018309	Tnrc6c	100	88.671	ENSMFAG00000043943	TNRC6C	100	91.119	Macaca_fascicularis
MGP_SPRETEiJ_G0018309	Tnrc6c	100	89.070	ENSMMUG00000011924	TNRC6C	100	91.119	Macaca_mulatta
MGP_SPRETEiJ_G0018309	Tnrc6c	100	88.615	ENSMNEG00000030405	TNRC6C	100	91.060	Macaca_nemestrina
MGP_SPRETEiJ_G0018309	Tnrc6c	100	88.671	ENSMLEG00000033436	TNRC6C	100	91.119	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0018309	Tnrc6c	95	52.643	ENSMAMG00000023613	tnrc6c1	97	50.431	Mastacembelus_armatus
MGP_SPRETEiJ_G0018309	Tnrc6c	99	46.831	ENSMZEG00005010920	tnrc6c1	97	49.868	Maylandia_zebra
MGP_SPRETEiJ_G0018309	Tnrc6c	100	77.168	ENSMGAG00000003906	TNRC6C	100	76.907	Meleagris_gallopavo
MGP_SPRETEiJ_G0018309	Tnrc6c	97	94.675	ENSMAUG00000021618	Tnrc6c	100	95.148	Mesocricetus_auratus
MGP_SPRETEiJ_G0018309	Tnrc6c	100	89.232	ENSMICG00000003952	TNRC6C	100	91.652	Microcebus_murinus
MGP_SPRETEiJ_G0018309	Tnrc6c	100	96.882	ENSMOCG00000015879	Tnrc6c	100	96.882	Microtus_ochrogaster
MGP_SPRETEiJ_G0018309	Tnrc6c	76	55.011	ENSMMOG00000005203	tnrc6c1	97	50.029	Mola_mola
MGP_SPRETEiJ_G0018309	Tnrc6c	100	85.166	ENSMODG00000001785	TNRC6C	99	84.546	Monodelphis_domestica
MGP_SPRETEiJ_G0018309	Tnrc6c	100	99.211	MGP_CAROLIEiJ_G0017465	Tnrc6c	100	99.211	Mus_caroli
MGP_SPRETEiJ_G0018309	Tnrc6c	100	99.737	ENSMUSG00000025571	Tnrc6c	100	99.737	Mus_musculus
MGP_SPRETEiJ_G0018309	Tnrc6c	100	98.730	MGP_PahariEiJ_G0018593	Tnrc6c	100	98.730	Mus_pahari
MGP_SPRETEiJ_G0018309	Tnrc6c	99	84.741	ENSMPUG00000013348	TNRC6C	99	85.107	Mustela_putorius_furo
MGP_SPRETEiJ_G0018309	Tnrc6c	100	81.630	ENSMLUG00000014431	TNRC6C	99	81.314	Myotis_lucifugus
MGP_SPRETEiJ_G0018309	Tnrc6c	100	93.966	ENSNGAG00000012203	Tnrc6c	99	94.086	Nannospalax_galili
MGP_SPRETEiJ_G0018309	Tnrc6c	99	47.323	ENSNBRG00000005344	tnrc6c1	99	46.832	Neolamprologus_brichardi
MGP_SPRETEiJ_G0018309	Tnrc6c	99	85.971	ENSNLEG00000000047	TNRC6C	99	86.252	Nomascus_leucogenys
MGP_SPRETEiJ_G0018309	Tnrc6c	98	79.871	ENSMEUG00000005104	TNRC6C	100	79.871	Notamacropus_eugenii
MGP_SPRETEiJ_G0018309	Tnrc6c	97	91.400	ENSODEG00000012499	TNRC6C	100	91.696	Octodon_degus
MGP_SPRETEiJ_G0018309	Tnrc6c	87	52.851	ENSONIG00000002210	tnrc6c1	96	53.814	Oreochromis_niloticus
MGP_SPRETEiJ_G0018309	Tnrc6c	100	82.979	ENSOANG00000009758	-	92	82.979	Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0018309	Tnrc6c	85	78.452	ENSOCUG00000006122	TNRC6C	95	76.815	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0018309	Tnrc6c	99	47.437	ENSORLG00000009837	tnrc6c1	100	67.286	Oryzias_latipes
MGP_SPRETEiJ_G0018309	Tnrc6c	99	46.285	ENSORLG00020016510	tnrc6c1	99	48.262	Oryzias_latipes_hni
MGP_SPRETEiJ_G0018309	Tnrc6c	81	42.398	ENSORLG00015000171	tnrc6c1	97	43.566	Oryzias_latipes_hsok
MGP_SPRETEiJ_G0018309	Tnrc6c	99	47.896	ENSOMEG00000000357	tnrc6c1	99	47.760	Oryzias_melastigma
MGP_SPRETEiJ_G0018309	Tnrc6c	97	88.812	ENSOGAG00000007197	TNRC6C	100	88.928	Otolemur_garnettii
MGP_SPRETEiJ_G0018309	Tnrc6c	96	82.048	ENSOARG00000006041	TNRC6C	97	82.057	Ovis_aries
MGP_SPRETEiJ_G0018309	Tnrc6c	100	88.503	ENSPPAG00000027160	TNRC6C	100	90.941	Pan_paniscus
MGP_SPRETEiJ_G0018309	Tnrc6c	100	85.171	ENSPPRG00000018881	TNRC6C	100	87.950	Panthera_pardus
MGP_SPRETEiJ_G0018309	Tnrc6c	100	88.503	ENSPTRG00000009699	TNRC6C	100	90.941	Pan_troglodytes
MGP_SPRETEiJ_G0018309	Tnrc6c	100	88.671	ENSPANG00000019994	TNRC6C	100	91.281	Papio_anubis
MGP_SPRETEiJ_G0018309	Tnrc6c	90	61.823	ENSPKIG00000005428	tnrc6c1	98	51.259	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0018309	Tnrc6c	100	83.966	ENSPSIG00000018069	TNRC6C	100	83.736	Pelodiscus_sinensis
MGP_SPRETEiJ_G0018309	Tnrc6c	63	54.409	ENSPMGG00000022911	tnrc6c1	97	63.968	Periophthalmus_magnuspinnatus
MGP_SPRETEiJ_G0018309	Tnrc6c	100	96.092	ENSPEMG00000009785	Tnrc6c	99	96.058	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0018309	Tnrc6c	56	83.625	ENSPCIG00000017421	-	99	83.625	Phascolarctos_cinereus
MGP_SPRETEiJ_G0018309	Tnrc6c	99	48.787	ENSPFOG00000012560	tnrc6c1	97	53.878	Poecilia_formosa
MGP_SPRETEiJ_G0018309	Tnrc6c	94	49.914	ENSPLAG00000021055	tnrc6c1	97	49.686	Poecilia_latipinna
MGP_SPRETEiJ_G0018309	Tnrc6c	100	89.014	ENSPPYG00000008679	TNRC6C	99	88.690	Pongo_abelii
MGP_SPRETEiJ_G0018309	Tnrc6c	93	92.654	ENSPCAG00000012510	TNRC6C	90	92.654	Procavia_capensis
MGP_SPRETEiJ_G0018309	Tnrc6c	97	92.126	ENSPCOG00000021451	TNRC6C	100	92.185	Propithecus_coquereli
MGP_SPRETEiJ_G0018309	Tnrc6c	96	89.831	ENSPVAG00000002008	TNRC6C	95	89.831	Pteropus_vampyrus
MGP_SPRETEiJ_G0018309	Tnrc6c	99	46.498	ENSPNYG00000014477	tnrc6c1	99	49.011	Pundamilia_nyererei
MGP_SPRETEiJ_G0018309	Tnrc6c	97	97.506	ENSRNOG00000022395	Tnrc6c	100	97.506	Rattus_norvegicus
MGP_SPRETEiJ_G0018309	Tnrc6c	100	88.559	ENSRBIG00000027777	TNRC6C	100	91.001	Rhinopithecus_bieti
MGP_SPRETEiJ_G0018309	Tnrc6c	100	88.615	ENSRROG00000042912	TNRC6C	100	91.060	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0018309	Tnrc6c	100	88.407	ENSSBOG00000023981	TNRC6C	100	88.638	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0018309	Tnrc6c	51	85.823	ENSSHAG00000018330	-	100	85.173	Sarcophilus_harrisii
MGP_SPRETEiJ_G0018309	Tnrc6c	65	55.889	ENSSFOG00015004735	-	99	60.574	Scleropages_formosus
MGP_SPRETEiJ_G0018309	Tnrc6c	99	47.450	ENSSMAG00000012761	tnrc6c1	99	50.231	Scophthalmus_maximus
MGP_SPRETEiJ_G0018309	Tnrc6c	99	49.419	ENSSDUG00000002366	tnrc6c1	98	49.784	Seriola_dumerili
MGP_SPRETEiJ_G0018309	Tnrc6c	91	49.498	ENSSLDG00000025613	tnrc6c1	97	50.000	Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0018309	Tnrc6c	91	89.224	ENSSARG00000006816	TNRC6C	91	89.076	Sorex_araneus
MGP_SPRETEiJ_G0018309	Tnrc6c	80	82.083	ENSSPUG00000007341	TNRC6C	98	82.292	Sphenodon_punctatus
MGP_SPRETEiJ_G0018309	Tnrc6c	76	53.574	ENSSPAG00000014977	tnrc6c1	98	47.989	Stegastes_partitus
MGP_SPRETEiJ_G0018309	Tnrc6c	97	84.410	ENSSSCG00000034373	TNRC6C	100	84.647	Sus_scrofa
MGP_SPRETEiJ_G0018309	Tnrc6c	100	86.502	ENSTGUG00000007733	TNRC6C	100	86.387	Taeniopygia_guttata
MGP_SPRETEiJ_G0018309	Tnrc6c	76	52.850	ENSTRUG00000011685	tnrc6c1	97	49.262	Takifugu_rubripes
MGP_SPRETEiJ_G0018309	Tnrc6c	95	54.401	ENSTNIG00000005273	tnrc6c1	100	59.372	Tetraodon_nigroviridis
MGP_SPRETEiJ_G0018309	Tnrc6c	62	89.844	ENSTBEG00000005046	TNRC6C	99	81.866	Tupaia_belangeri
MGP_SPRETEiJ_G0018309	Tnrc6c	100	88.914	ENSTTRG00000010828	TNRC6C	99	89.087	Tursiops_truncatus
MGP_SPRETEiJ_G0018309	Tnrc6c	99	87.615	ENSUMAG00000013614	TNRC6C	99	87.560	Ursus_maritimus
MGP_SPRETEiJ_G0018309	Tnrc6c	50	79.385	ENSVPAG00000006765	-	93	92.523	Vicugna_pacos
MGP_SPRETEiJ_G0018309	Tnrc6c	97	90.166	ENSVVUG00000015268	TNRC6C	100	90.344	Vulpes_vulpes
MGP_SPRETEiJ_G0018309	Tnrc6c	97	73.666	ENSXETG00000019470	tnrc6c	100	73.149	Xenopus_tropicalis
MGP_SPRETEiJ_G0018309	Tnrc6c	99	49.443	ENSXMAG00000025971	tnrc6c1	99	49.452	Xiphophorus_maculatus