EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0018373 (Gene tree)
Gene ID: -
Gene Symbol: Alyref
Alias: REF1|Refbp1|Thoc4
Full Name: Aly/REF export factor
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Minus strand
Length: 6206 bases
Position: chr11:123547861-123554066
Accession: 1341044
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0033025	RRM_1	PF00076.22	2.2e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0033025	-	3532	-	MGP_SPRETEiJ_P0033025	255 (aa)	-	UPI000002795D
MGP_SPRETEiJ_T0033027	-	709	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0033026	-	644	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0018373's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0018373's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_SPRETEiJ_G0018373	Alyref	69	58.850	MGP_SPRETEiJ_G0016590	-	54	77.049
MGP_SPRETEiJ_G0018373	Alyref	100	76.953	MGP_SPRETEiJ_G0015679	Alyref2	100	69.020

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0018373	Alyref	100	96.109	ENSG00000183684	ALYREF	97	96.109	Homo_sapiens
MGP_SPRETEiJ_G0018373	Alyref	100	68.592	ENSAPOG00000018455	ALYREF	100	71.841	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0018373	Alyref	80	87.560	ENSAMEG00000017463	ALYREF	74	95.628	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0018373	Alyref	100	76.154	ENSACAG00000010526	ALYREF	100	74.330	Anolis_carolinensis
MGP_SPRETEiJ_G0018373	Alyref	69	92.655	ENSANAG00000022638	-	77	92.818	Aotus_nancymaae
MGP_SPRETEiJ_G0018373	Alyref	100	83.594	ENSANAG00000028229	-	78	79.688	Aotus_nancymaae
MGP_SPRETEiJ_G0018373	Alyref	100	97.276	ENSBTAG00000008498	ALYREF	100	97.276	Bos_taurus
MGP_SPRETEiJ_G0018373	Alyref	100	95.720	ENSCJAG00000039942	ALYREF	97	95.720	Callithrix_jacchus
MGP_SPRETEiJ_G0018373	Alyref	100	96.498	ENSCAFG00000005877	ALYREF	100	96.498	Canis_familiaris
MGP_SPRETEiJ_G0018373	Alyref	100	96.498	ENSCAFG00020009815	ALYREF	100	96.498	Canis_lupus_dingo
MGP_SPRETEiJ_G0018373	Alyref	100	96.512	ENSCHIG00000017396	ALYREF	97	96.512	Capra_hircus
MGP_SPRETEiJ_G0018373	Alyref	87	80.000	ENSTSYG00000002272	ALYREF	69	97.143	Carlito_syrichta
MGP_SPRETEiJ_G0018373	Alyref	52	98.496	ENSCAPG00000014727	-	100	98.496	Cavia_aperea
MGP_SPRETEiJ_G0018373	Alyref	100	97.656	ENSCPOG00000013710	ALYREF	100	97.656	Cavia_porcellus
MGP_SPRETEiJ_G0018373	Alyref	100	96.109	ENSCCAG00000020578	-	97	96.109	Cebus_capucinus
MGP_SPRETEiJ_G0018373	Alyref	100	75.294	ENSCCAG00000030237	-	100	72.549	Cebus_capucinus
MGP_SPRETEiJ_G0018373	Alyref	100	96.109	ENSCATG00000033169	ALYREF	97	96.109	Cercocebus_atys
MGP_SPRETEiJ_G0018373	Alyref	100	86.719	ENSCLAG00000015026	ALYREF	100	89.062	Chinchilla_lanigera
MGP_SPRETEiJ_G0018373	Alyref	100	96.109	ENSCSAG00000002216	ALYREF	97	96.109	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0018373	Alyref	71	91.713	ENSCANG00000034056	ALYREF	95	84.409	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0018373	Alyref	100	97.255	ENSCGRG00001018191	-	100	97.255	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0018373	Alyref	77	90.816	ENSCGRG00000015871	-	90	87.027	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0018373	Alyref	73	57.732	ENSCSEG00000015438	-	98	54.455	Cynoglossus_semilaevis
MGP_SPRETEiJ_G0018373	Alyref	69	92.135	ENSDNOG00000002563	ALYREF	97	80.870	Dasypus_novemcinctus
MGP_SPRETEiJ_G0018373	Alyref	89	82.533	ENSDORG00000025849	-	73	96.667	Dipodomys_ordii
MGP_SPRETEiJ_G0018373	Alyref	69	97.175	ENSETEG00000016596	ALYREF	100	94.350	Echinops_telfairi
MGP_SPRETEiJ_G0018373	Alyref	100	96.887	ENSEASG00005005824	ALYREF	95	96.887	Equus_asinus_asinus
MGP_SPRETEiJ_G0018373	Alyref	100	96.887	ENSECAG00000018754	ALYREF	95	96.887	Equus_caballus
MGP_SPRETEiJ_G0018373	Alyref	67	93.605	ENSEEUG00000010164	ALYREF	100	93.605	Erinaceus_europaeus
MGP_SPRETEiJ_G0018373	Alyref	100	96.887	ENSFCAG00000022549	ALYREF	98	96.887	Felis_catus
MGP_SPRETEiJ_G0018373	Alyref	80	85.784	ENSFDAG00000001213	ALYREF	93	88.293	Fukomys_damarensis
MGP_SPRETEiJ_G0018373	Alyref	100	84.496	ENSGALG00000007237	ALYREF	100	83.846	Gallus_gallus
MGP_SPRETEiJ_G0018373	Alyref	100	71.970	ENSGACG00000013328	ALYREF	100	72.727	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0018373	Alyref	100	81.226	ENSGAGG00000008536	ALYREF	100	81.992	Gopherus_agassizii
MGP_SPRETEiJ_G0018373	Alyref	100	96.498	ENSGGOG00000013935	ALYREF	99	95.736	Gorilla_gorilla
MGP_SPRETEiJ_G0018373	Alyref	100	94.531	ENSHGLG00000008293	ALYREF	100	96.094	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0018373	Alyref	80	80.000	ENSHGLG00100006949	ALYREF	85	88.500	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0018373	Alyref	100	67.416	ENSHCOG00000015046	ALYREF	100	69.373	Hippocampus_comes
MGP_SPRETEiJ_G0018373	Alyref	100	96.484	ENSJJAG00000004134	-	100	96.484	Jaculus_jaculus
MGP_SPRETEiJ_G0018373	Alyref	100	71.863	ENSLACG00000005694	ALYREF	100	73.384	Latimeria_chalumnae
MGP_SPRETEiJ_G0018373	Alyref	73	97.861	ENSLAFG00000003083	ALYREF	100	97.861	Loxodonta_africana
MGP_SPRETEiJ_G0018373	Alyref	100	93.774	ENSMFAG00000001394	ALYREF	97	93.774	Macaca_fascicularis
MGP_SPRETEiJ_G0018373	Alyref	100	96.109	ENSMMUG00000012884	ALYREF	97	96.109	Macaca_mulatta
MGP_SPRETEiJ_G0018373	Alyref	100	96.109	ENSMNEG00000043666	ALYREF	97	96.109	Macaca_nemestrina
MGP_SPRETEiJ_G0018373	Alyref	73	86.772	ENSMLEG00000043353	ALYREF	87	84.127	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0018373	Alyref	100	79.923	ENSMAUG00000020552	-	100	80.392	Mesocricetus_auratus
MGP_SPRETEiJ_G0018373	Alyref	100	96.875	ENSMICG00000017403	ALYREF	97	96.875	Microcebus_murinus
MGP_SPRETEiJ_G0018373	Alyref	100	85.496	ENSMOCG00000016792	-	100	85.271	Microtus_ochrogaster
MGP_SPRETEiJ_G0018373	Alyref	99	89.883	ENSMODG00000003030	ALYREF	84	92.607	Monodelphis_domestica
MGP_SPRETEiJ_G0018373	Alyref	100	70.182	ENSMALG00000019408	ALYREF	100	70.438	Monopterus_albus
MGP_SPRETEiJ_G0018373	Alyref	100	100.000	MGP_CAROLIEiJ_G0017529	Alyref	100	100.000	Mus_caroli
MGP_SPRETEiJ_G0018373	Alyref	100	74.118	MGP_CAROLIEiJ_G0014874	Alyref2	100	70.588	Mus_caroli
MGP_SPRETEiJ_G0018373	Alyref	91	66.094	ENSMUSG00000094314	Gm4301	62	64.500	Mus_musculus
MGP_SPRETEiJ_G0018373	Alyref	91	67.241	ENSMUSG00000112931	Gm4303	62	66.000	Mus_musculus
MGP_SPRETEiJ_G0018373	Alyref	100	63.604	ENSMUSG00000094144	Gm21312	100	54.064	Mus_musculus
MGP_SPRETEiJ_G0018373	Alyref	100	63.636	ENSMUSG00000117091	AC153137.1	100	61.977	Mus_musculus
MGP_SPRETEiJ_G0018373	Alyref	91	66.094	ENSMUSG00000096640	Gm4312	62	64.500	Mus_musculus
MGP_SPRETEiJ_G0018373	Alyref	100	63.604	ENSMUSG00000097427	Gm6763	98	62.424	Mus_musculus
MGP_SPRETEiJ_G0018373	Alyref	100	64.015	ENSMUSG00000086727	4931428L18Rik	100	61.977	Mus_musculus
MGP_SPRETEiJ_G0018373	Alyref	100	63.604	ENSMUSG00000091779	Gm21293	100	54.064	Mus_musculus
MGP_SPRETEiJ_G0018373	Alyref	100	63.604	ENSMUSG00000097550	Gm21304	100	54.064	Mus_musculus
MGP_SPRETEiJ_G0018373	Alyref	100	62.718	ENSMUSG00000090854	Gm4340	100	53.659	Mus_musculus
MGP_SPRETEiJ_G0018373	Alyref	100	100.000	ENSMUSG00000025134	Alyref	100	100.000	Mus_musculus
MGP_SPRETEiJ_G0018373	Alyref	91	67.241	ENSMUSG00000096744	Gm4307	62	66.000	Mus_musculus
MGP_SPRETEiJ_G0018373	Alyref	91	67.382	ENSMUSG00000091101	Gm4302	61	66.000	Mus_musculus
MGP_SPRETEiJ_G0018373	Alyref	100	77.344	ENSMUSG00000060244	Alyref2	100	70.980	Mus_musculus
MGP_SPRETEiJ_G0018373	Alyref	100	63.604	ENSMUSG00000097878	Gm8764	98	62.424	Mus_musculus
MGP_SPRETEiJ_G0018373	Alyref	91	67.241	ENSMUSG00000112856	Gm4305	62	66.000	Mus_musculus
MGP_SPRETEiJ_G0018373	Alyref	100	63.604	ENSMUSG00000095022	Gm20765	100	54.064	Mus_musculus
MGP_SPRETEiJ_G0018373	Alyref	82	69.048	MGP_PahariEiJ_G0027255	-	79	67.500	Mus_pahari
MGP_SPRETEiJ_G0018373	Alyref	82	69.048	MGP_PahariEiJ_G0027254	-	81	67.500	Mus_pahari
MGP_SPRETEiJ_G0018373	Alyref	100	100.000	MGP_PahariEiJ_G0018655	-	100	100.000	Mus_pahari
MGP_SPRETEiJ_G0018373	Alyref	74	100.000	MGP_PahariEiJ_G0018656	-	99	100.000	Mus_pahari
MGP_SPRETEiJ_G0018373	Alyref	98	62.800	ENSMLUG00000024447	-	76	60.400	Myotis_lucifugus
MGP_SPRETEiJ_G0018373	Alyref	98	64.659	ENSMLUG00000026271	-	79	61.847	Myotis_lucifugus
MGP_SPRETEiJ_G0018373	Alyref	98	63.600	ENSMLUG00000027352	-	77	61.600	Myotis_lucifugus
MGP_SPRETEiJ_G0018373	Alyref	98	56.371	ENSMLUG00000024471	-	82	53.846	Myotis_lucifugus
MGP_SPRETEiJ_G0018373	Alyref	98	70.800	ENSMLUG00000027516	-	78	69.600	Myotis_lucifugus
MGP_SPRETEiJ_G0018373	Alyref	98	58.431	ENSMLUG00000022869	-	81	56.250	Myotis_lucifugus
MGP_SPRETEiJ_G0018373	Alyref	100	53.558	ENSMLUG00000023213	-	100	50.566	Myotis_lucifugus
MGP_SPRETEiJ_G0018373	Alyref	98	64.173	ENSMLUG00000025677	-	77	64.173	Myotis_lucifugus
MGP_SPRETEiJ_G0018373	Alyref	98	56.031	ENSMLUG00000015043	-	98	54.651	Myotis_lucifugus
MGP_SPRETEiJ_G0018373	Alyref	84	58.716	ENSMLUG00000028343	-	85	64.607	Myotis_lucifugus
MGP_SPRETEiJ_G0018373	Alyref	98	64.143	ENSMLUG00000024976	-	79	59.363	Myotis_lucifugus
MGP_SPRETEiJ_G0018373	Alyref	98	62.598	ENSMLUG00000030407	-	77	61.811	Myotis_lucifugus
MGP_SPRETEiJ_G0018373	Alyref	82	84.038	ENSMLUG00000009555	-	66	92.655	Myotis_lucifugus
MGP_SPRETEiJ_G0018373	Alyref	98	64.981	ENSMLUG00000002626	-	98	64.981	Myotis_lucifugus
MGP_SPRETEiJ_G0018373	Alyref	100	96.498	ENSNLEG00000010313	ALYREF	97	96.498	Nomascus_leucogenys
MGP_SPRETEiJ_G0018373	Alyref	89	74.236	ENSMEUG00000002210	ALYREF	100	74.236	Notamacropus_eugenii
MGP_SPRETEiJ_G0018373	Alyref	52	94.737	ENSOPRG00000005551	-	52	94.737	Ochotona_princeps
MGP_SPRETEiJ_G0018373	Alyref	100	96.923	ENSODEG00000008359	ALYREF	100	96.923	Octodon_degus
MGP_SPRETEiJ_G0018373	Alyref	100	69.231	ENSORLG00000012331	ALYREF	100	71.587	Oryzias_latipes
MGP_SPRETEiJ_G0018373	Alyref	76	91.371	ENSOGAG00000012409	ALYREF	76	93.296	Otolemur_garnettii
MGP_SPRETEiJ_G0018373	Alyref	69	95.506	ENSOARG00000017932	ALYREF	67	97.753	Ovis_aries
MGP_SPRETEiJ_G0018373	Alyref	100	96.887	ENSPPRG00000010829	ALYREF	98	96.887	Panthera_pardus
MGP_SPRETEiJ_G0018373	Alyref	56	97.931	ENSPTIG00000006399	ALYREF	81	97.931	Panthera_tigris_altaica
MGP_SPRETEiJ_G0018373	Alyref	100	96.498	ENSPTRG00000009774	ALYREF	97	96.498	Pan_troglodytes
MGP_SPRETEiJ_G0018373	Alyref	100	96.109	ENSPANG00000019265	ALYREF	97	96.109	Papio_anubis
MGP_SPRETEiJ_G0018373	Alyref	51	88.722	ENSPSIG00000017541	ALYREF	98	90.977	Pelodiscus_sinensis
MGP_SPRETEiJ_G0018373	Alyref	100	96.109	ENSPPYG00000008749	ALYREF	97	96.109	Pongo_abelii
MGP_SPRETEiJ_G0018373	Alyref	100	96.875	ENSPCOG00000020874	ALYREF	97	96.875	Propithecus_coquereli
MGP_SPRETEiJ_G0018373	Alyref	100	80.469	ENSPVAG00000017866	ALYREF	100	80.469	Pteropus_vampyrus
MGP_SPRETEiJ_G0018373	Alyref	67	99.419	ENSRNOG00000036687	Alyref	91	99.419	Rattus_norvegicus
MGP_SPRETEiJ_G0018373	Alyref	71	91.713	ENSRBIG00000039651	ALYREF	74	93.370	Rhinopithecus_bieti
MGP_SPRETEiJ_G0018373	Alyref	90	85.776	ENSRROG00000045364	ALYREF	83	91.469	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0018373	Alyref	75	89.005	ENSSHAG00000010459	ALYREF	96	94.054	Sarcophilus_harrisii
MGP_SPRETEiJ_G0018373	Alyref	100	52.708	ENSSDUG00000003992	-	100	53.069	Seriola_dumerili
MGP_SPRETEiJ_G0018373	Alyref	100	53.285	ENSSLDG00000005386	-	100	54.745	Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0018373	Alyref	100	82.759	ENSSPUG00000004600	ALYREF	100	81.609	Sphenodon_punctatus
MGP_SPRETEiJ_G0018373	Alyref	100	68.705	ENSSPAG00000011178	ALYREF	97	70.144	Stegastes_partitus
MGP_SPRETEiJ_G0018373	Alyref	100	97.266	ENSSSCG00000032655	ALYREF	100	97.266	Sus_scrofa
MGP_SPRETEiJ_G0018373	Alyref	51	92.424	ENSTGUG00000003513	ALYREF	100	90.370	Taeniopygia_guttata
MGP_SPRETEiJ_G0018373	Alyref	100	69.373	ENSTRUG00000008828	ALYREF	100	69.485	Takifugu_rubripes
MGP_SPRETEiJ_G0018373	Alyref	69	96.629	ENSTBEG00000005834	ALYREF	100	96.629	Tupaia_belangeri
MGP_SPRETEiJ_G0018373	Alyref	100	96.109	ENSTTRG00000012275	ALYREF	100	96.109	Tursiops_truncatus
MGP_SPRETEiJ_G0018373	Alyref	69	85.227	ENSUAMG00000016931	ALYREF	66	85.227	Ursus_americanus
MGP_SPRETEiJ_G0018373	Alyref	69	85.227	ENSUMAG00000016384	ALYREF	65	85.227	Ursus_maritimus
MGP_SPRETEiJ_G0018373	Alyref	100	75.391	ENSXETG00000005391	alyref	100	75.581	Xenopus_tropicalis