EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0018840 (Gene tree)
Gene ID: -
Gene Symbol: Slirp
Alias: 1810035L17Rik
Full Name: SRA stem-loop interacting RNA binding protein
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Plus strand
Length: 6211 bases
Position: chr12:81441410-81447620
Accession: 1916394
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0034518	RRM_1	PF00076.22	4.2e-14	1	1
MGP_SPRETEiJ_P0034519	RRM_1	PF00076.22	8.8e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0034518	-	385	-	MGP_SPRETEiJ_P0034518	112 (aa)	-	-
MGP_SPRETEiJ_T0034519	-	335	-	MGP_SPRETEiJ_P0034519	102 (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0018840's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0018840's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_SPRETEiJ_G0018840	Slirp	91	32.184	MGP_SPRETEiJ_G0016392	Dazap1	89	33.846
MGP_SPRETEiJ_G0018840	Slirp	70	33.824	MGP_SPRETEiJ_G0017795	Msi2	60	33.824
MGP_SPRETEiJ_G0018840	Slirp	73	33.846	MGP_SPRETEiJ_G0017155	Hnrnpab	51	33.846

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0018840	Slirp	85	70.526	ENSG00000119705	SLIRP	99	78.667	Homo_sapiens
MGP_SPRETEiJ_G0018840	Slirp	66	56.757	ENSAPOG00000001298	slirp	74	56.757	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0018840	Slirp	81	80.220	ENSAMEG00000003975	SLIRP	100	80.220	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0018840	Slirp	79	51.136	ENSACIG00000023083	slirp	85	51.136	Amphilophus_citrinellus
MGP_SPRETEiJ_G0018840	Slirp	80	51.111	ENSAOCG00000006342	slirp	90	51.111	Amphiprion_ocellaris
MGP_SPRETEiJ_G0018840	Slirp	80	51.111	ENSAPEG00000015917	slirp	90	51.111	Amphiprion_percula
MGP_SPRETEiJ_G0018840	Slirp	80	51.111	ENSAPEG00000015719	-	91	51.111	Amphiprion_percula
MGP_SPRETEiJ_G0018840	Slirp	66	54.054	ENSATEG00000013525	slirp	74	54.054	Anabas_testudineus
MGP_SPRETEiJ_G0018840	Slirp	78	49.425	ENSAMXG00000018693	slirp	87	49.425	Astyanax_mexicanus
MGP_SPRETEiJ_G0018840	Slirp	97	74.312	ENSCJAG00000016946	SLIRP	95	79.545	Callithrix_jacchus
MGP_SPRETEiJ_G0018840	Slirp	97	76.147	ENSCAFG00020015876	-	98	76.147	Canis_lupus_dingo
MGP_SPRETEiJ_G0018840	Slirp	97	75.229	ENSCCAG00000030130	SLIRP	98	75.229	Cebus_capucinus
MGP_SPRETEiJ_G0018840	Slirp	96	71.296	ENSCATG00000036327	SLIRP	95	77.273	Cercocebus_atys
MGP_SPRETEiJ_G0018840	Slirp	87	75.258	ENSCSAG00000011736	SLIRP	96	74.074	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0018840	Slirp	74	51.190	ENSCPBG00000026327	SLIRP	85	51.190	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0018840	Slirp	63	83.099	ENSCANG00000032892	SLIRP	90	76.136	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0018840	Slirp	97	68.807	ENSCGRG00001024068	Slirp	98	68.807	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0018840	Slirp	97	68.807	ENSCGRG00000017440	Slirp	98	68.807	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0018840	Slirp	82	54.348	ENSCSEG00000015766	slirp	84	54.348	Cynoglossus_semilaevis
MGP_SPRETEiJ_G0018840	Slirp	72	54.321	ENSCVAG00000012504	slirp	80	54.321	Cyprinodon_variegatus
MGP_SPRETEiJ_G0018840	Slirp	67	57.333	ENSDARG00000097753	slirp	73	57.333	Danio_rerio
MGP_SPRETEiJ_G0018840	Slirp	79	69.663	ENSDNOG00000007721	SLIRP	98	66.055	Dasypus_novemcinctus
MGP_SPRETEiJ_G0018840	Slirp	99	72.973	ENSDORG00000012379	Slirp	100	72.973	Dipodomys_ordii
MGP_SPRETEiJ_G0018840	Slirp	88	70.408	ENSETEG00000010345	SLIRP	98	68.807	Echinops_telfairi
MGP_SPRETEiJ_G0018840	Slirp	99	80.180	ENSEASG00005020193	SLIRP	100	80.180	Equus_asinus_asinus
MGP_SPRETEiJ_G0018840	Slirp	90	60.396	ENSEEUG00000007257	SLIRP	99	60.396	Erinaceus_europaeus
MGP_SPRETEiJ_G0018840	Slirp	77	50.000	ENSELUG00000016800	slirp	84	50.000	Esox_lucius
MGP_SPRETEiJ_G0018840	Slirp	79	81.818	ENSFCAG00000036326	SLIRP	90	81.818	Felis_catus
MGP_SPRETEiJ_G0018840	Slirp	63	50.704	ENSFALG00000012583	SLIRP	86	47.312	Ficedula_albicollis
MGP_SPRETEiJ_G0018840	Slirp	91	69.608	ENSFDAG00000008347	SLIRP	90	69.608	Fukomys_damarensis
MGP_SPRETEiJ_G0018840	Slirp	71	48.750	ENSFHEG00000004709	slirp	86	48.750	Fundulus_heteroclitus
MGP_SPRETEiJ_G0018840	Slirp	67	57.333	ENSGMOG00000016948	slirp	72	57.333	Gadus_morhua
MGP_SPRETEiJ_G0018840	Slirp	78	44.828	ENSGALG00000031238	SLIRP	88	44.828	Gallus_gallus
MGP_SPRETEiJ_G0018840	Slirp	67	60.000	ENSGAFG00000010998	slirp	75	60.000	Gambusia_affinis
MGP_SPRETEiJ_G0018840	Slirp	64	54.167	ENSGACG00000020137	slirp	84	54.167	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0018840	Slirp	95	53.271	ENSGAGG00000009953	SLIRP	73	53.271	Gopherus_agassizii
MGP_SPRETEiJ_G0018840	Slirp	85	70.526	ENSGGOG00000011059	-	95	77.273	Gorilla_gorilla
MGP_SPRETEiJ_G0018840	Slirp	97	62.385	ENSHGLG00000018491	SLIRP	98	62.385	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0018840	Slirp	97	62.385	ENSHGLG00100014153	SLIRP	98	62.385	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0018840	Slirp	79	53.409	ENSHCOG00000006795	slirp	88	53.409	Hippocampus_comes
MGP_SPRETEiJ_G0018840	Slirp	66	54.054	ENSIPUG00000010214	SLIRP	74	54.054	Ictalurus_punctatus
MGP_SPRETEiJ_G0018840	Slirp	88	79.592	ENSSTOG00000034316	SLIRP	98	77.982	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0018840	Slirp	82	43.478	ENSKMAG00000002038	slirp	79	43.478	Kryptolebias_marmoratus
MGP_SPRETEiJ_G0018840	Slirp	78	50.575	ENSLBEG00000007564	slirp	87	50.575	Labrus_bergylta
MGP_SPRETEiJ_G0018840	Slirp	78	54.023	ENSLACG00000013434	SLIRP	83	54.023	Latimeria_chalumnae
MGP_SPRETEiJ_G0018840	Slirp	87	74.227	ENSMFAG00000042960	SLIRP	95	78.409	Macaca_fascicularis
MGP_SPRETEiJ_G0018840	Slirp	87	74.227	ENSMMUG00000029256	SLIRP	95	78.409	Macaca_mulatta
MGP_SPRETEiJ_G0018840	Slirp	87	74.227	ENSMNEG00000028921	SLIRP	95	78.409	Macaca_nemestrina
MGP_SPRETEiJ_G0018840	Slirp	79	77.273	ENSMLEG00000043644	SLIRP	90	77.273	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0018840	Slirp	79	51.136	ENSMZEG00005004617	slirp	87	51.136	Maylandia_zebra
MGP_SPRETEiJ_G0018840	Slirp	97	71.560	ENSMAUG00000003857	Slirp	98	71.560	Mesocricetus_auratus
MGP_SPRETEiJ_G0018840	Slirp	97	67.890	ENSMICG00000012080	SLIRP	98	67.890	Microcebus_murinus
MGP_SPRETEiJ_G0018840	Slirp	100	75.893	ENSMOCG00000016019	Slirp	100	75.893	Microtus_ochrogaster
MGP_SPRETEiJ_G0018840	Slirp	67	53.333	ENSMMOG00000018268	slirp	75	53.333	Mola_mola
MGP_SPRETEiJ_G0018840	Slirp	62	63.768	ENSMODG00000005207	-	97	63.768	Monodelphis_domestica
MGP_SPRETEiJ_G0018840	Slirp	67	53.333	ENSMALG00000012581	slirp	77	53.333	Monopterus_albus
MGP_SPRETEiJ_G0018840	Slirp	100	97.321	MGP_CAROLIEiJ_G0017995	Slirp	100	98.148	Mus_caroli
MGP_SPRETEiJ_G0018840	Slirp	100	99.107	ENSMUSG00000021040	Slirp	100	99.107	Mus_musculus
MGP_SPRETEiJ_G0018840	Slirp	84	75.532	ENSMLUG00000024998	-	98	73.394	Myotis_lucifugus
MGP_SPRETEiJ_G0018840	Slirp	88	77.551	ENSMLUG00000029544	-	98	75.229	Myotis_lucifugus
MGP_SPRETEiJ_G0018840	Slirp	96	72.477	ENSNGAG00000016363	Slirp	100	72.477	Nannospalax_galili
MGP_SPRETEiJ_G0018840	Slirp	88	66.327	ENSNLEG00000027238	-	91	70.886	Nomascus_leucogenys
MGP_SPRETEiJ_G0018840	Slirp	96	67.593	ENSNLEG00000032459	-	95	72.727	Nomascus_leucogenys
MGP_SPRETEiJ_G0018840	Slirp	100	73.214	ENSODEG00000012580	SLIRP	100	73.214	Octodon_degus
MGP_SPRETEiJ_G0018840	Slirp	79	52.273	ENSONIG00000011692	slirp	87	52.273	Oreochromis_niloticus
MGP_SPRETEiJ_G0018840	Slirp	84	59.375	ENSOANG00000022366	SLIRP	86	59.375	Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0018840	Slirp	93	45.714	ENSORLG00000010761	slirp	81	45.714	Oryzias_latipes
MGP_SPRETEiJ_G0018840	Slirp	79	50.562	ENSORLG00020022188	slirp	88	50.562	Oryzias_latipes_hni
MGP_SPRETEiJ_G0018840	Slirp	98	45.455	ENSORLG00015020171	slirp	99	45.455	Oryzias_latipes_hsok
MGP_SPRETEiJ_G0018840	Slirp	66	58.108	ENSOMEG00000019321	slirp	74	58.108	Oryzias_melastigma
MGP_SPRETEiJ_G0018840	Slirp	85	69.474	ENSPPAG00000040710	-	95	77.273	Pan_paniscus
MGP_SPRETEiJ_G0018840	Slirp	79	81.818	ENSPPRG00000014350	SLIRP	90	81.818	Panthera_pardus
MGP_SPRETEiJ_G0018840	Slirp	79	81.818	ENSPTIG00000014196	SLIRP	90	81.818	Panthera_tigris_altaica
MGP_SPRETEiJ_G0018840	Slirp	85	70.526	ENSPTRG00000030691	SLIRP	95	77.273	Pan_troglodytes
MGP_SPRETEiJ_G0018840	Slirp	96	73.148	ENSPANG00000026323	SLIRP	95	78.409	Papio_anubis
MGP_SPRETEiJ_G0018840	Slirp	58	52.308	ENSPKIG00000008831	slirp	64	52.308	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0018840	Slirp	62	60.870	ENSPMGG00000010541	slirp	79	60.870	Periophthalmus_magnuspinnatus
MGP_SPRETEiJ_G0018840	Slirp	90	77.451	ENSPEMG00000013234	Slirp	99	74.336	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0018840	Slirp	61	45.588	ENSPMAG00000009355	slirp	76	45.588	Petromyzon_marinus
MGP_SPRETEiJ_G0018840	Slirp	71	62.963	ENSPCIG00000026842	-	87	62.963	Phascolarctos_cinereus
MGP_SPRETEiJ_G0018840	Slirp	99	47.748	ENSPFOG00000006758	slirp	100	47.748	Poecilia_formosa
MGP_SPRETEiJ_G0018840	Slirp	99	47.748	ENSPLAG00000011140	slirp	100	47.748	Poecilia_latipinna
MGP_SPRETEiJ_G0018840	Slirp	99	47.748	ENSPMEG00000019535	slirp	100	47.748	Poecilia_mexicana
MGP_SPRETEiJ_G0018840	Slirp	85	53.684	ENSPREG00000011673	slirp	85	53.684	Poecilia_reticulata
MGP_SPRETEiJ_G0018840	Slirp	88	68.367	ENSPPYG00000006030	SLIRP	97	67.890	Pongo_abelii
MGP_SPRETEiJ_G0018840	Slirp	97	68.807	ENSPCOG00000015159	SLIRP	98	68.807	Propithecus_coquereli
MGP_SPRETEiJ_G0018840	Slirp	79	57.955	ENSPNAG00000008633	slirp	88	57.955	Pygocentrus_nattereri
MGP_SPRETEiJ_G0018840	Slirp	69	79.221	ENSRBIG00000032998	-	81	77.273	Rhinopithecus_bieti
MGP_SPRETEiJ_G0018840	Slirp	87	69.231	ENSRBIG00000035817	-	99	68.519	Rhinopithecus_bieti
MGP_SPRETEiJ_G0018840	Slirp	67	80.000	ENSRBIG00000031396	-	86	77.907	Rhinopithecus_bieti
MGP_SPRETEiJ_G0018840	Slirp	87	75.258	ENSRBIG00000032222	-	95	78.409	Rhinopithecus_bieti
MGP_SPRETEiJ_G0018840	Slirp	72	76.543	ENSRROG00000041312	-	91	75.000	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0018840	Slirp	69	79.221	ENSRROG00000017133	-	92	77.273	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0018840	Slirp	67	78.667	ENSRROG00000035604	-	86	76.744	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0018840	Slirp	87	74.227	ENSRROG00000036656	-	95	77.273	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0018840	Slirp	79	77.273	ENSSBOG00000020014	SLIRP	95	77.273	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0018840	Slirp	63	61.429	ENSSFOG00015011165	slirp	71	61.429	Scleropages_formosus
MGP_SPRETEiJ_G0018840	Slirp	96	37.037	ENSSMAG00000012930	slirp	96	37.037	Scophthalmus_maximus
MGP_SPRETEiJ_G0018840	Slirp	67	60.000	ENSSLDG00000023136	slirp	68	60.000	Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0018840	Slirp	68	53.947	ENSSPUG00000009346	SLIRP	78	53.947	Sphenodon_punctatus
MGP_SPRETEiJ_G0018840	Slirp	66	52.703	ENSSPAG00000013477	slirp	74	52.703	Stegastes_partitus
MGP_SPRETEiJ_G0018840	Slirp	97	75.229	ENSSSCG00000028167	SLIRP	98	75.229	Sus_scrofa
MGP_SPRETEiJ_G0018840	Slirp	77	47.674	ENSTGUG00000012337	SLIRP	86	49.462	Taeniopygia_guttata
MGP_SPRETEiJ_G0018840	Slirp	67	52.632	ENSTRUG00000020127	slirp	75	52.632	Takifugu_rubripes
MGP_SPRETEiJ_G0018840	Slirp	97	77.982	ENSUAMG00000022445	SLIRP	98	77.982	Ursus_americanus
MGP_SPRETEiJ_G0018840	Slirp	97	78.899	ENSUMAG00000007166	SLIRP	98	78.899	Ursus_maritimus
MGP_SPRETEiJ_G0018840	Slirp	97	71.560	ENSVPAG00000001781	SLIRP	98	71.560	Vicugna_pacos
MGP_SPRETEiJ_G0018840	Slirp	83	83.871	ENSVVUG00000004436	SLIRP	98	78.899	Vulpes_vulpes
MGP_SPRETEiJ_G0018840	Slirp	63	56.338	ENSXETG00000030343	SLIRP	80	56.338	Xenopus_tropicalis
MGP_SPRETEiJ_G0018840	Slirp	98	47.273	ENSXCOG00000009422	slirp	99	47.273	Xiphophorus_couchianus
MGP_SPRETEiJ_G0018840	Slirp	98	47.273	ENSXMAG00000015655	slirp	99	47.273	Xiphophorus_maculatus