EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0019074 (Gene tree)
Gene ID: -
Gene Symbol: Larp4b
Alias: D13Wsu64e|Larp5
Full Name: La ribonucleoprotein domain family%2C member 4B
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Plus strand
Length: 83941 bases
Position: chr13:5733390-5817330
Accession: 106330
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0035201	La	PF05383.17	3.7e-14	1	1
MGP_SPRETEiJ_P0035199	La	PF05383.17	4e-14	1	1
MGP_SPRETEiJ_P0035198	La	PF05383.17	4.5e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0035203	-	403	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0035202	-	385	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0035201	-	5735	-	MGP_SPRETEiJ_P0035201	657 (aa)	-	-
MGP_SPRETEiJ_T0035200	-	533	-	MGP_SPRETEiJ_P0035200	36 (aa)	-	UPI00053BD835
MGP_SPRETEiJ_T0035204	-	4670	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0035199	-	2659	-	MGP_SPRETEiJ_P0035199	663 (aa)	-	-
MGP_SPRETEiJ_T0035198	-	2726	-	MGP_SPRETEiJ_P0035198	741 (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0019074's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0019074's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0019074	Larp4b	100	87.584	ENSG00000107929	LARP4B	100	87.719	Homo_sapiens
MGP_SPRETEiJ_G0019074	Larp4b	100	50.000	ENSAPOG00000020531	LARP4B	100	55.105	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0019074	Larp4b	100	86.842	ENSAMEG00000001810	LARP4B	100	84.232	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0019074	Larp4b	86	61.790	ENSAOCG00000007887	-	79	84.768	Amphiprion_ocellaris
MGP_SPRETEiJ_G0019074	Larp4b	93	57.916	ENSAPEG00000002512	LARP4B	98	56.258	Amphiprion_percula
MGP_SPRETEiJ_G0019074	Larp4b	100	60.368	ENSATEG00000012614	LARP4B	100	55.006	Anabas_testudineus
MGP_SPRETEiJ_G0019074	Larp4b	100	78.756	ENSAPLG00000003813	LARP4B	98	76.096	Anas_platyrhynchos
MGP_SPRETEiJ_G0019074	Larp4b	100	77.014	ENSACAG00000002858	LARP4B	100	73.670	Anolis_carolinensis
MGP_SPRETEiJ_G0019074	Larp4b	100	86.910	ENSANAG00000007531	-	100	86.775	Aotus_nancymaae
MGP_SPRETEiJ_G0019074	Larp4b	100	62.759	ENSACLG00000026356	LARP4B	100	57.054	Astatotilapia_calliptera
MGP_SPRETEiJ_G0019074	Larp4b	95	58.140	ENSAMXG00000003335	larp4b	91	53.801	Astyanax_mexicanus
MGP_SPRETEiJ_G0019074	Larp4b	100	80.914	ENSBTAG00000013899	LARP4B	100	80.780	Bos_taurus
MGP_SPRETEiJ_G0019074	Larp4b	100	86.235	ENSCJAG00000018434	LARP4B	100	86.100	Callithrix_jacchus
MGP_SPRETEiJ_G0019074	Larp4b	100	88.070	ENSCAFG00020004209	LARP4B	100	85.040	Canis_lupus_dingo
MGP_SPRETEiJ_G0019074	Larp4b	100	80.511	ENSCHIG00000013543	LARP4B	100	80.376	Capra_hircus
MGP_SPRETEiJ_G0019074	Larp4b	80	89.412	ENSTSYG00000002568	LARP4B	100	89.244	Carlito_syrichta
MGP_SPRETEiJ_G0019074	Larp4b	96	82.474	ENSCAPG00000009725	LARP4B	97	77.933	Cavia_aperea
MGP_SPRETEiJ_G0019074	Larp4b	100	92.619	ENSCPOG00000009375	LARP4B	100	89.474	Cavia_porcellus
MGP_SPRETEiJ_G0019074	Larp4b	100	87.045	ENSCCAG00000024869	LARP4B	100	86.910	Cebus_capucinus
MGP_SPRETEiJ_G0019074	Larp4b	100	87.854	ENSCATG00000019750	LARP4B	100	87.719	Cercocebus_atys
MGP_SPRETEiJ_G0019074	Larp4b	100	92.271	ENSCLAG00000011570	LARP4B	100	88.814	Chinchilla_lanigera
MGP_SPRETEiJ_G0019074	Larp4b	66	88.710	ENSCHOG00000007831	-	66	88.710	Choloepus_hoffmanni
MGP_SPRETEiJ_G0019074	Larp4b	100	78.411	ENSCPBG00000017063	LARP4B	100	75.931	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0019074	Larp4b	100	85.965	ENSCANG00000038021	LARP4B	100	85.830	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0019074	Larp4b	100	94.737	ENSCGRG00001022930	Larp4b	100	94.737	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0019074	Larp4b	100	94.737	ENSCGRG00000006022	Larp4b	100	94.737	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0019074	Larp4b	100	53.997	ENSCSEG00000007342	LARP4B	100	54.260	Cynoglossus_semilaevis
MGP_SPRETEiJ_G0019074	Larp4b	100	60.420	ENSCVAG00000008910	LARP4B	100	56.305	Cyprinodon_variegatus
MGP_SPRETEiJ_G0019074	Larp4b	87	57.870	ENSDARG00000062146	larp4b	90	53.275	Danio_rerio
MGP_SPRETEiJ_G0019074	Larp4b	93	89.344	ENSDNOG00000045543	-	100	88.956	Dasypus_novemcinctus
MGP_SPRETEiJ_G0019074	Larp4b	100	88.705	ENSDORG00000009328	Larp4b	100	90.175	Dipodomys_ordii
MGP_SPRETEiJ_G0019074	Larp4b	89	81.377	ENSETEG00000011249	LARP4B	91	82.818	Echinops_telfairi
MGP_SPRETEiJ_G0019074	Larp4b	100	85.849	ENSEASG00005019068	-	100	85.714	Equus_asinus_asinus
MGP_SPRETEiJ_G0019074	Larp4b	100	85.714	ENSECAG00000024040	LARP4B	100	85.580	Equus_caballus
MGP_SPRETEiJ_G0019074	Larp4b	100	80.940	ENSEEUG00000008391	LARP4B	98	80.805	Erinaceus_europaeus
MGP_SPRETEiJ_G0019074	Larp4b	100	60.165	ENSELUG00000008626	LARP4B	100	56.576	Esox_lucius
MGP_SPRETEiJ_G0019074	Larp4b	86	49.005	ENSELUG00000001417	-	94	40.148	Esox_lucius
MGP_SPRETEiJ_G0019074	Larp4b	100	87.500	ENSFCAG00000000721	-	100	84.005	Felis_catus
MGP_SPRETEiJ_G0019074	Larp4b	100	77.375	ENSFALG00000006961	LARP4B	100	75.000	Ficedula_albicollis
MGP_SPRETEiJ_G0019074	Larp4b	100	93.322	ENSFDAG00000006158	LARP4B	97	89.623	Fukomys_damarensis
MGP_SPRETEiJ_G0019074	Larp4b	100	51.229	ENSFHEG00000013037	LARP4B	65	89.916	Fundulus_heteroclitus
MGP_SPRETEiJ_G0019074	Larp4b	82	65.312	ENSGMOG00000010818	-	88	66.667	Gadus_morhua
MGP_SPRETEiJ_G0019074	Larp4b	100	78.066	ENSGALG00000006672	LARP4B	100	75.364	Gallus_gallus
MGP_SPRETEiJ_G0019074	Larp4b	100	57.623	ENSGACG00000017535	LARP4B	98	58.527	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0019074	Larp4b	90	80.897	ENSGAGG00000008598	LARP4B	100	77.697	Gopherus_agassizii
MGP_SPRETEiJ_G0019074	Larp4b	100	87.449	ENSGGOG00000003572	LARP4B	100	87.314	Gorilla_gorilla
MGP_SPRETEiJ_G0019074	Larp4b	100	62.241	ENSHBUG00000007535	LARP4B	100	56.125	Haplochromis_burtoni
MGP_SPRETEiJ_G0019074	Larp4b	100	93.322	ENSHGLG00000012936	LARP4B	100	93.497	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0019074	Larp4b	86	78.450	ENSHGLG00100017261	-	100	74.654	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0019074	Larp4b	100	92.970	ENSHGLG00100016220	-	100	89.892	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0019074	Larp4b	99	61.298	ENSHCOG00000011581	LARP4B	89	53.719	Hippocampus_comes
MGP_SPRETEiJ_G0019074	Larp4b	93	52.713	ENSIPUG00000009705	larp4b	90	52.500	Ictalurus_punctatus
MGP_SPRETEiJ_G0019074	Larp4b	100	94.912	ENSSTOG00000000587	LARP4B	100	87.618	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0019074	Larp4b	100	91.228	ENSJJAG00000020847	Larp4b	100	91.093	Jaculus_jaculus
MGP_SPRETEiJ_G0019074	Larp4b	100	61.311	ENSKMAG00000021674	LARP4B	100	57.659	Kryptolebias_marmoratus
MGP_SPRETEiJ_G0019074	Larp4b	86	60.774	ENSLBEG00000025293	-	81	60.097	Labrus_bergylta
MGP_SPRETEiJ_G0019074	Larp4b	90	70.736	ENSLACG00000009492	LARP4B	100	65.991	Latimeria_chalumnae
MGP_SPRETEiJ_G0019074	Larp4b	100	66.822	ENSLOCG00000012290	larp4b	100	66.141	Lepisosteus_oculatus
MGP_SPRETEiJ_G0019074	Larp4b	100	87.981	ENSLAFG00000015334	LARP4B	100	86.475	Loxodonta_africana
MGP_SPRETEiJ_G0019074	Larp4b	100	87.854	ENSMFAG00000001766	LARP4B	100	85.695	Macaca_fascicularis
MGP_SPRETEiJ_G0019074	Larp4b	100	87.854	ENSMMUG00000005279	LARP4B	100	87.719	Macaca_mulatta
MGP_SPRETEiJ_G0019074	Larp4b	100	87.719	ENSMNEG00000014019	LARP4B	100	85.695	Macaca_nemestrina
MGP_SPRETEiJ_G0019074	Larp4b	100	87.466	ENSMLEG00000035198	LARP4B	100	87.332	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0019074	Larp4b	100	58.786	ENSMAMG00000013742	LARP4B	100	55.762	Mastacembelus_armatus
MGP_SPRETEiJ_G0019074	Larp4b	81	71.018	ENSMZEG00005014594	-	100	57.415	Maylandia_zebra
MGP_SPRETEiJ_G0019074	Larp4b	86	62.241	ENSMZEG00005006498	-	96	61.440	Maylandia_zebra
MGP_SPRETEiJ_G0019074	Larp4b	100	78.856	ENSMGAG00000005472	LARP4B	100	73.936	Meleagris_gallopavo
MGP_SPRETEiJ_G0019074	Larp4b	100	95.324	ENSMAUG00000021657	Larp4b	100	97.012	Mesocricetus_auratus
MGP_SPRETEiJ_G0019074	Larp4b	100	84.359	ENSMICG00000001301	LARP4B	100	82.186	Microcebus_murinus
MGP_SPRETEiJ_G0019074	Larp4b	100	95.173	ENSMOCG00000021452	Larp4b	100	96.309	Microtus_ochrogaster
MGP_SPRETEiJ_G0019074	Larp4b	78	69.374	ENSMMOG00000011253	-	89	61.353	Mola_mola
MGP_SPRETEiJ_G0019074	Larp4b	100	77.751	ENSMODG00000005957	LARP4B	100	73.879	Monodelphis_domestica
MGP_SPRETEiJ_G0019074	Larp4b	100	49.535	ENSMALG00000012432	LARP4B	100	50.730	Monopterus_albus
MGP_SPRETEiJ_G0019074	Larp4b	100	98.190	MGP_CAROLIEiJ_G0018216	Larp4b	100	98.190	Mus_caroli
MGP_SPRETEiJ_G0019074	Larp4b	100	99.865	ENSMUSG00000033499	Larp4b	100	99.865	Mus_musculus
MGP_SPRETEiJ_G0019074	Larp4b	100	97.301	MGP_PahariEiJ_G0019266	Larp4b	100	97.301	Mus_pahari
MGP_SPRETEiJ_G0019074	Larp4b	100	86.842	ENSMPUG00000016220	LARP4B	97	83.827	Mustela_putorius_furo
MGP_SPRETEiJ_G0019074	Larp4b	94	82.014	ENSMLUG00000005880	LARP4B	100	82.014	Myotis_lucifugus
MGP_SPRETEiJ_G0019074	Larp4b	100	90.553	ENSNGAG00000001750	Larp4b	100	90.553	Nannospalax_galili
MGP_SPRETEiJ_G0019074	Larp4b	78	62.704	ENSNBRG00000020018	LARP4B	88	55.233	Neolamprologus_brichardi
MGP_SPRETEiJ_G0019074	Larp4b	100	87.179	ENSNLEG00000013442	LARP4B	100	87.045	Nomascus_leucogenys
MGP_SPRETEiJ_G0019074	Larp4b	79	84.211	ENSMEUG00000013114	-	70	84.211	Notamacropus_eugenii
MGP_SPRETEiJ_G0019074	Larp4b	98	90.580	ENSOPRG00000003300	LARP4B	100	86.631	Ochotona_princeps
MGP_SPRETEiJ_G0019074	Larp4b	100	86.819	ENSODEG00000001109	LARP4B	100	86.995	Octodon_degus
MGP_SPRETEiJ_G0019074	Larp4b	100	63.238	ENSONIG00000017705	LARP4B	100	59.283	Oreochromis_niloticus
MGP_SPRETEiJ_G0019074	Larp4b	100	77.033	ENSOANG00000006100	LARP4B	100	74.440	Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0019074	Larp4b	100	88.351	ENSOCUG00000004950	LARP4B	97	88.220	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0019074	Larp4b	100	60.678	ENSORLG00000006080	LARP4B	100	55.056	Oryzias_latipes
MGP_SPRETEiJ_G0019074	Larp4b	100	60.406	ENSORLG00020020940	LARP4B	100	54.919	Oryzias_latipes_hni
MGP_SPRETEiJ_G0019074	Larp4b	100	60.575	ENSORLG00015020608	LARP4B	100	55.125	Oryzias_latipes_hsok
MGP_SPRETEiJ_G0019074	Larp4b	100	58.997	ENSOMEG00000019619	LARP4B	100	54.246	Oryzias_melastigma
MGP_SPRETEiJ_G0019074	Larp4b	93	86.973	ENSOGAG00000011540	LARP4B	100	84.438	Otolemur_garnettii
MGP_SPRETEiJ_G0019074	Larp4b	100	80.455	ENSOARG00000015320	LARP4B	98	80.321	Ovis_aries
MGP_SPRETEiJ_G0019074	Larp4b	100	87.314	ENSPPAG00000039232	LARP4B	100	87.179	Pan_paniscus
MGP_SPRETEiJ_G0019074	Larp4b	100	87.676	ENSPPRG00000009489	LARP4B	100	84.367	Panthera_pardus
MGP_SPRETEiJ_G0019074	Larp4b	100	87.500	ENSPTIG00000008543	LARP4B	100	84.232	Panthera_tigris_altaica
MGP_SPRETEiJ_G0019074	Larp4b	100	87.314	ENSPTRG00000002235	LARP4B	100	87.179	Pan_troglodytes
MGP_SPRETEiJ_G0019074	Larp4b	100	87.854	ENSPANG00000023546	LARP4B	100	85.830	Papio_anubis
MGP_SPRETEiJ_G0019074	Larp4b	99	55.974	ENSPKIG00000012368	LARP4B	99	56.161	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0019074	Larp4b	85	85.714	ENSPSIG00000005600	LARP4B	99	85.714	Pelodiscus_sinensis
MGP_SPRETEiJ_G0019074	Larp4b	98	59.524	ENSPMGG00000008261	LARP4B	91	53.571	Periophthalmus_magnuspinnatus
MGP_SPRETEiJ_G0019074	Larp4b	100	94.737	ENSPEMG00000014052	Larp4b	100	94.602	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0019074	Larp4b	100	60.161	ENSPFOG00000000029	LARP4B	100	55.459	Poecilia_formosa
MGP_SPRETEiJ_G0019074	Larp4b	100	60.161	ENSPLAG00000002871	LARP4B	100	55.917	Poecilia_latipinna
MGP_SPRETEiJ_G0019074	Larp4b	100	60.064	ENSPMEG00000016361	LARP4B	100	55.583	Poecilia_mexicana
MGP_SPRETEiJ_G0019074	Larp4b	100	87.466	ENSPPYG00000002035	LARP4B	97	87.332	Pongo_abelii
MGP_SPRETEiJ_G0019074	Larp4b	100	87.873	ENSPCOG00000014688	LARP4B	100	85.560	Propithecus_coquereli
MGP_SPRETEiJ_G0019074	Larp4b	85	88.571	ENSPVAG00000009784	LARP4B	88	88.571	Pteropus_vampyrus
MGP_SPRETEiJ_G0019074	Larp4b	100	62.759	ENSPNYG00000024252	LARP4B	100	56.804	Pundamilia_nyererei
MGP_SPRETEiJ_G0019074	Larp4b	95	53.963	ENSPNAG00000028956	larp4b	90	53.891	Pygocentrus_nattereri
MGP_SPRETEiJ_G0019074	Larp4b	99	95.946	ENSRNOG00000015888	Larp4b	100	95.946	Rattus_norvegicus
MGP_SPRETEiJ_G0019074	Larp4b	100	87.584	ENSRBIG00000033294	LARP4B	100	87.449	Rhinopithecus_bieti
MGP_SPRETEiJ_G0019074	Larp4b	100	87.314	ENSRROG00000033879	LARP4B	100	87.179	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0019074	Larp4b	100	81.377	ENSSBOG00000021109	LARP4B	100	81.242	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0019074	Larp4b	100	77.990	ENSSHAG00000013392	LARP4B	100	75.333	Sarcophilus_harrisii
MGP_SPRETEiJ_G0019074	Larp4b	91	59.684	ENSSFOG00015003256	LARP4B	93	56.454	Scleropages_formosus
MGP_SPRETEiJ_G0019074	Larp4b	100	59.228	ENSSMAG00000005982	-	99	75.862	Scophthalmus_maximus
MGP_SPRETEiJ_G0019074	Larp4b	100	61.790	ENSSDUG00000006704	LARP4B	100	57.019	Seriola_dumerili
MGP_SPRETEiJ_G0019074	Larp4b	86	66.939	ENSSLDG00000020660	LARP4B	99	59.357	Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0019074	Larp4b	63	98.113	ENSSARG00000001243	-	79	98.113	Sorex_araneus
MGP_SPRETEiJ_G0019074	Larp4b	79	80.000	ENSSPUG00000013734	-	91	79.831	Sphenodon_punctatus
MGP_SPRETEiJ_G0019074	Larp4b	100	73.253	ENSSPUG00000002102	-	100	73.118	Sphenodon_punctatus
MGP_SPRETEiJ_G0019074	Larp4b	100	61.575	ENSSPAG00000014628	LARP4B	100	61.337	Stegastes_partitus
MGP_SPRETEiJ_G0019074	Larp4b	100	80.593	ENSSSCG00000011162	LARP4B	100	83.934	Sus_scrofa
MGP_SPRETEiJ_G0019074	Larp4b	100	77.816	ENSTGUG00000000811	-	100	75.333	Taeniopygia_guttata
MGP_SPRETEiJ_G0019074	Larp4b	98	64.663	ENSTNIG00000007991	LARP4B	99	54.892	Tetraodon_nigroviridis
MGP_SPRETEiJ_G0019074	Larp4b	100	55.426	ENSTNIG00000004571	-	98	56.684	Tetraodon_nigroviridis
MGP_SPRETEiJ_G0019074	Larp4b	89	88.647	ENSTTRG00000011151	LARP4B	90	87.600	Tursiops_truncatus
MGP_SPRETEiJ_G0019074	Larp4b	88	86.350	ENSUAMG00000016461	LARP4B	95	86.350	Ursus_americanus
MGP_SPRETEiJ_G0019074	Larp4b	100	87.719	ENSUMAG00000016127	LARP4B	100	84.771	Ursus_maritimus
MGP_SPRETEiJ_G0019074	Larp4b	57	94.944	ENSVPAG00000000128	-	73	94.944	Vicugna_pacos
MGP_SPRETEiJ_G0019074	Larp4b	100	87.544	ENSVVUG00000008641	LARP4B	100	84.636	Vulpes_vulpes
MGP_SPRETEiJ_G0019074	Larp4b	99	73.634	ENSXETG00000016882	larp4b	100	69.657	Xenopus_tropicalis
MGP_SPRETEiJ_G0019074	Larp4b	100	57.607	ENSXCOG00000019952	LARP4B	100	53.462	Xiphophorus_couchianus
MGP_SPRETEiJ_G0019074	Larp4b	100	59.839	ENSXMAG00000021533	LARP4B	100	55.250	Xiphophorus_maculatus