EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0019129 (Gene tree)
Gene ID: -
Gene Symbol: Zkscan4
Alias: -
Full Name: zinc finger with KRAB and SCAN domains 4
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Plus strand
Length: 6568 bases
Position: chr13:17468239-17474806
Accession: 3649412
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0035363	zf-C2H2	PF00096.26	9.5e-41	1	7
MGP_SPRETEiJ_P0035363	zf-C2H2	PF00096.26	9.5e-41	2	7
MGP_SPRETEiJ_P0035363	zf-C2H2	PF00096.26	9.5e-41	3	7
MGP_SPRETEiJ_P0035363	zf-C2H2	PF00096.26	9.5e-41	4	7
MGP_SPRETEiJ_P0035363	zf-C2H2	PF00096.26	9.5e-41	5	7
MGP_SPRETEiJ_P0035363	zf-C2H2	PF00096.26	9.5e-41	6	7
MGP_SPRETEiJ_P0035363	zf-C2H2	PF00096.26	9.5e-41	7	7
MGP_SPRETEiJ_P0035363	zf-met	PF12874.7	1.8e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0035363	-	2421	-	MGP_SPRETEiJ_P0035363	480 (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0019129's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0019129's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_SPRETEiJ_G0019129	Zkscan4	63	54.348	MGP_SPRETEiJ_G0025181	Zfp661	60	47.186
MGP_SPRETEiJ_G0019129	Zkscan4	53	41.475	MGP_SPRETEiJ_G0030524	Zfp59	82	49.153
MGP_SPRETEiJ_G0019129	Zkscan4	51	45.106	MGP_SPRETEiJ_G0030526	-	86	45.106
MGP_SPRETEiJ_G0019129	Zkscan4	50	45.763	MGP_SPRETEiJ_G0030525	-	82	45.763
MGP_SPRETEiJ_G0019129	Zkscan4	52	48.035	MGP_SPRETEiJ_G0019560	Zfp748	93	48.035
MGP_SPRETEiJ_G0019129	Zkscan4	54	52.632	MGP_SPRETEiJ_G0030421	-	99	51.982
MGP_SPRETEiJ_G0019129	Zkscan4	54	52.000	MGP_SPRETEiJ_G0030420	Zfp108	66	52.000
MGP_SPRETEiJ_G0019129	Zkscan4	60	46.591	MGP_SPRETEiJ_G0030423	Zfp94	72	47.137
MGP_SPRETEiJ_G0019129	Zkscan4	54	49.286	MGP_SPRETEiJ_G0030422	Zfp61	57	49.286
MGP_SPRETEiJ_G0019129	Zkscan4	61	46.099	MGP_SPRETEiJ_G0017458	Bcl6b	51	46.099
MGP_SPRETEiJ_G0019129	Zkscan4	53	53.712	MGP_SPRETEiJ_G0030586	Zfp420	99	60.645
MGP_SPRETEiJ_G0019129	Zkscan4	55	50.000	MGP_SPRETEiJ_G0030709	-	85	47.186
MGP_SPRETEiJ_G0019129	Zkscan4	66	48.372	MGP_SPRETEiJ_G0029809	Zfp637	71	48.372
MGP_SPRETEiJ_G0019129	Zkscan4	60	47.639	MGP_SPRETEiJ_G0030415	Zfp112	55	47.660
MGP_SPRETEiJ_G0019129	Zkscan4	53	45.133	MGP_SPRETEiJ_G0030713	Zfp715	71	45.133
MGP_SPRETEiJ_G0019129	Zkscan4	50	41.518	MGP_SPRETEiJ_G0027723	Zbtb17	56	41.518
MGP_SPRETEiJ_G0019129	Zkscan4	76	46.457	MGP_SPRETEiJ_G0019543	-	67	44.949
MGP_SPRETEiJ_G0019129	Zkscan4	66	45.600	MGP_SPRETEiJ_G0019544	Zfp759	87	45.622
MGP_SPRETEiJ_G0019129	Zkscan4	54	45.852	MGP_SPRETEiJ_G0017233	Zfp672	100	40.741
MGP_SPRETEiJ_G0019129	Zkscan4	57	47.857	MGP_SPRETEiJ_G0029346	Repin1	95	47.857
MGP_SPRETEiJ_G0019129	Zkscan4	53	55.090	MGP_SPRETEiJ_G0032697	Zfp1	67	55.090
MGP_SPRETEiJ_G0019129	Zkscan4	53	52.381	MGP_SPRETEiJ_G0030453	Zfp574	59	49.057
MGP_SPRETEiJ_G0019129	Zkscan4	54	47.826	MGP_SPRETEiJ_G0029467	Prdm5	75	47.826
MGP_SPRETEiJ_G0019129	Zkscan4	53	45.000	MGP_SPRETEiJ_G0017272	Zfp867	77	45.217
MGP_SPRETEiJ_G0019129	Zkscan4	53	37.179	MGP_SPRETEiJ_G0032539	Zfp319	89	35.079
MGP_SPRETEiJ_G0019129	Zkscan4	54	41.564	MGP_SPRETEiJ_G0031614	-	83	40.496
MGP_SPRETEiJ_G0019129	Zkscan4	54	41.564	MGP_SPRETEiJ_G0031613	-	83	40.496
MGP_SPRETEiJ_G0019129	Zkscan4	51	47.639	MGP_SPRETEiJ_G0031612	Zfp768	52	52.632
MGP_SPRETEiJ_G0019129	Zkscan4	51	45.342	MGP_SPRETEiJ_G0028173	Zbtb49	66	47.222
MGP_SPRETEiJ_G0019129	Zkscan4	62	48.408	MGP_SPRETEiJ_G0022052	Zfp945	88	45.872
MGP_SPRETEiJ_G0019129	Zkscan4	95	40.667	MGP_SPRETEiJ_G0022057	Zscan10	98	43.269
MGP_SPRETEiJ_G0019129	Zkscan4	57	51.695	MGP_SPRETEiJ_G0020852	Zfp251	73	48.498
MGP_SPRETEiJ_G0019129	Zkscan4	54	51.938	MGP_SPRETEiJ_G0030416	Zfp235	71	51.938
MGP_SPRETEiJ_G0019129	Zkscan4	54	51.786	MGP_SPRETEiJ_G0030417	Zfp114	69	52.727
MGP_SPRETEiJ_G0019129	Zkscan4	60	47.619	MGP_SPRETEiJ_G0023360	Zfp236	68	46.835
MGP_SPRETEiJ_G0019129	Zkscan4	51	35.294	MGP_SPRETEiJ_G0025644	Zfp64	70	35.294
MGP_SPRETEiJ_G0019129	Zkscan4	51	43.678	MGP_SPRETEiJ_G0030188	Zfp628	63	43.503

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0019129	Zkscan4	99	59.335	ENSCGRG00001006591	Zkscan3	97	59.519	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0019129	Zkscan4	99	59.335	ENSCGRG00000001582	Zkscan3	97	59.519	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0019129	Zkscan4	99	63.060	ENSJJAG00000004576	-	97	63.060	Jaculus_jaculus
MGP_SPRETEiJ_G0019129	Zkscan4	99	59.555	ENSMAUG00000009785	Zkscan3	97	59.740	Mesocricetus_auratus
MGP_SPRETEiJ_G0019129	Zkscan4	99	58.998	ENSMOCG00000017860	Zkscan3	97	59.184	Microtus_ochrogaster
MGP_SPRETEiJ_G0019129	Zkscan4	100	91.732	MGP_CAROLIEiJ_G0018274	Zkscan4	100	91.142	Mus_caroli
MGP_SPRETEiJ_G0019129	Zkscan4	99	56.827	ENSMUSG00000021327	Zkscan3	97	79.021	Mus_musculus
MGP_SPRETEiJ_G0019129	Zkscan4	100	99.375	ENSMUSG00000054931	Zkscan4	100	99.375	Mus_musculus
MGP_SPRETEiJ_G0019129	Zkscan4	99	96.421	MGP_PahariEiJ_G0019324	Zkscan4	99	96.421	Mus_pahari
MGP_SPRETEiJ_G0019129	Zkscan4	99	54.991	ENSPCAG00000000195	ZKSCAN4	99	49.546	Procavia_capensis
MGP_SPRETEiJ_G0019129	Zkscan4	99	57.615	ENSSSCG00000001204	ZKSCAN4	100	63.536	Sus_scrofa
MGP_SPRETEiJ_G0019129	Zkscan4	70	65.301	ENSTTRG00000015632	-	100	65.301	Tursiops_truncatus