EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0019321 (Gene tree)
Gene ID: -
Gene Symbol: Snrnp48
Alias: 1110050F08Rik|6530403A03Rik
Full Name: small nuclear ribonucleoprotein 48 (U11/U12)
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Plus strand
Length: 22327 bases
Position: chr13:34548960-34571286
Accession: 1915047
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0035746	zf-U11-48K	PF05253.12	1e-09	1	1
MGP_SPRETEiJ_P0035745	zf-U11-48K	PF05253.12	1.4e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0035746	-	847	-	MGP_SPRETEiJ_P0035746	274 (aa)	-	-
MGP_SPRETEiJ_T0035745	-	1832	-	MGP_SPRETEiJ_P0035745	337 (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0019321's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0019321's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0019321	Snrnp48	100	85.251	ENSG00000168566	SNRNP48	100	86.136	Homo_sapiens
MGP_SPRETEiJ_G0019321	Snrnp48	82	47.535	ENSAPOG00000021430	snrnp48	96	43.440	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0019321	Snrnp48	99	83.862	ENSAMEG00000017349	SNRNP48	100	83.862	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0019321	Snrnp48	89	44.371	ENSACIG00000002032	snrnp48	96	41.667	Amphilophus_citrinellus
MGP_SPRETEiJ_G0019321	Snrnp48	82	47.535	ENSAOCG00000010562	snrnp48	96	43.804	Amphiprion_ocellaris
MGP_SPRETEiJ_G0019321	Snrnp48	82	47.163	ENSAPEG00000003231	snrnp48	96	43.478	Amphiprion_percula
MGP_SPRETEiJ_G0019321	Snrnp48	77	49.265	ENSATEG00000020210	snrnp48	81	49.643	Anabas_testudineus
MGP_SPRETEiJ_G0019321	Snrnp48	82	65.278	ENSACAG00000002811	SNRNP48	89	65.278	Anolis_carolinensis
MGP_SPRETEiJ_G0019321	Snrnp48	100	84.956	ENSANAG00000033538	SNRNP48	100	85.841	Aotus_nancymaae
MGP_SPRETEiJ_G0019321	Snrnp48	93	46.273	ENSAMXG00000015309	snrnp48	97	44.838	Astyanax_mexicanus
MGP_SPRETEiJ_G0019321	Snrnp48	100	82.353	ENSBTAG00000001123	SNRNP48	100	83.529	Bos_taurus
MGP_SPRETEiJ_G0019321	Snrnp48	100	85.546	ENSCJAG00000021330	SNRNP48	100	86.431	Callithrix_jacchus
MGP_SPRETEiJ_G0019321	Snrnp48	99	86.310	ENSCAFG00000009574	SNRNP48	83	86.053	Canis_familiaris
MGP_SPRETEiJ_G0019321	Snrnp48	99	86.053	ENSCAFG00020013203	SNRNP48	99	86.053	Canis_lupus_dingo
MGP_SPRETEiJ_G0019321	Snrnp48	100	83.529	ENSCHIG00000015216	SNRNP48	100	84.706	Capra_hircus
MGP_SPRETEiJ_G0019321	Snrnp48	100	84.956	ENSTSYG00000000698	SNRNP48	100	85.841	Carlito_syrichta
MGP_SPRETEiJ_G0019321	Snrnp48	91	82.085	ENSCAPG00000006768	SNRNP48	100	82.085	Cavia_aperea
MGP_SPRETEiJ_G0019321	Snrnp48	100	85.251	ENSCPOG00000007910	SNRNP48	100	85.251	Cavia_porcellus
MGP_SPRETEiJ_G0019321	Snrnp48	100	84.366	ENSCCAG00000035652	SNRNP48	100	85.251	Cebus_capucinus
MGP_SPRETEiJ_G0019321	Snrnp48	100	84.661	ENSCATG00000033947	SNRNP48	100	85.546	Cercocebus_atys
MGP_SPRETEiJ_G0019321	Snrnp48	100	84.956	ENSCLAG00000003765	SNRNP48	100	85.841	Chinchilla_lanigera
MGP_SPRETEiJ_G0019321	Snrnp48	100	85.251	ENSCSAG00000007409	SNRNP48	100	86.136	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0019321	Snrnp48	84	64.452	ENSCPBG00000019146	SNRNP48	91	64.452	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0019321	Snrnp48	100	85.251	ENSCANG00000030017	SNRNP48	100	86.136	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0019321	Snrnp48	99	73.874	ENSCGRG00001008805	-	95	72.673	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0019321	Snrnp48	100	93.472	ENSCGRG00001001076	-	100	93.472	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0019321	Snrnp48	100	93.472	ENSCGRG00000007781	Snrnp48	100	93.472	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0019321	Snrnp48	75	48.438	ENSCSEG00000000722	snrnp48	70	48.438	Cynoglossus_semilaevis
MGP_SPRETEiJ_G0019321	Snrnp48	96	45.210	ENSCVAG00000019829	snrnp48	66	49.242	Cyprinodon_variegatus
MGP_SPRETEiJ_G0019321	Snrnp48	82	45.423	ENSDARG00000039989	snrnp48	96	42.985	Danio_rerio
MGP_SPRETEiJ_G0019321	Snrnp48	99	85.672	ENSDNOG00000014978	SNRNP48	99	85.672	Dasypus_novemcinctus
MGP_SPRETEiJ_G0019321	Snrnp48	99	85.251	ENSDORG00000015140	Snrnp48	99	85.251	Dipodomys_ordii
MGP_SPRETEiJ_G0019321	Snrnp48	68	35.204	ENSEBUG00000016376	-	89	34.247	Eptatretus_burgeri
MGP_SPRETEiJ_G0019321	Snrnp48	99	86.686	ENSEASG00005012021	SNRNP48	99	86.686	Equus_asinus_asinus
MGP_SPRETEiJ_G0019321	Snrnp48	100	87.316	ENSECAG00000026937	SNRNP48	100	87.316	Equus_caballus
MGP_SPRETEiJ_G0019321	Snrnp48	100	77.000	ENSEEUG00000015437	SNRNP48	99	65.782	Erinaceus_europaeus
MGP_SPRETEiJ_G0019321	Snrnp48	88	47.712	ENSELUG00000009766	snrnp48	78	48.592	Esox_lucius
MGP_SPRETEiJ_G0019321	Snrnp48	100	86.726	ENSFCAG00000018853	SNRNP48	100	86.726	Felis_catus
MGP_SPRETEiJ_G0019321	Snrnp48	83	62.671	ENSFALG00000007797	SNRNP48	93	63.356	Ficedula_albicollis
MGP_SPRETEiJ_G0019321	Snrnp48	99	83.432	ENSFDAG00000009231	SNRNP48	99	85.503	Fukomys_damarensis
MGP_SPRETEiJ_G0019321	Snrnp48	59	55.941	ENSFHEG00000014647	snrnp48	97	46.000	Fundulus_heteroclitus
MGP_SPRETEiJ_G0019321	Snrnp48	73	47.177	ENSGMOG00000018599	-	77	47.244	Gadus_morhua
MGP_SPRETEiJ_G0019321	Snrnp48	76	65.283	ENSGALG00000013005	SNRNP48	90	65.283	Gallus_gallus
MGP_SPRETEiJ_G0019321	Snrnp48	95	41.471	ENSGAFG00000021639	snrnp48	94	43.844	Gambusia_affinis
MGP_SPRETEiJ_G0019321	Snrnp48	74	49.004	ENSGACG00000017756	-	96	44.985	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0019321	Snrnp48	84	63.333	ENSGAGG00000000865	SNRNP48	97	63.333	Gopherus_agassizii
MGP_SPRETEiJ_G0019321	Snrnp48	100	85.251	ENSGGOG00000013220	SNRNP48	100	86.136	Gorilla_gorilla
MGP_SPRETEiJ_G0019321	Snrnp48	75	47.656	ENSHBUG00000017066	snrnp48	95	42.105	Haplochromis_burtoni
MGP_SPRETEiJ_G0019321	Snrnp48	99	84.615	ENSHGLG00000015241	SNRNP48	99	85.503	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0019321	Snrnp48	99	84.615	ENSHGLG00100010027	SNRNP48	99	85.503	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0019321	Snrnp48	72	47.154	ENSHCOG00000014066	snrnp48	92	41.399	Hippocampus_comes
MGP_SPRETEiJ_G0019321	Snrnp48	100	88.791	ENSSTOG00000014635	SNRNP48	100	89.676	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0019321	Snrnp48	100	85.251	ENSJJAG00000011495	Snrnp48	100	85.251	Jaculus_jaculus
MGP_SPRETEiJ_G0019321	Snrnp48	91	44.805	ENSKMAG00000016514	snrnp48	94	42.353	Kryptolebias_marmoratus
MGP_SPRETEiJ_G0019321	Snrnp48	75	48.235	ENSLBEG00000026249	snrnp48	95	44.214	Labrus_bergylta
MGP_SPRETEiJ_G0019321	Snrnp48	98	52.239	ENSLACG00000003958	SNRNP48	99	51.020	Latimeria_chalumnae
MGP_SPRETEiJ_G0019321	Snrnp48	84	51.557	ENSLOCG00000004187	snrnp48	95	49.258	Lepisosteus_oculatus
MGP_SPRETEiJ_G0019321	Snrnp48	100	83.186	ENSLAFG00000011152	SNRNP48	100	83.186	Loxodonta_africana
MGP_SPRETEiJ_G0019321	Snrnp48	100	85.546	ENSMFAG00000045216	SNRNP48	100	86.431	Macaca_fascicularis
MGP_SPRETEiJ_G0019321	Snrnp48	100	85.546	ENSMMUG00000014785	SNRNP48	100	86.431	Macaca_mulatta
MGP_SPRETEiJ_G0019321	Snrnp48	100	85.546	ENSMNEG00000042269	SNRNP48	100	86.431	Macaca_nemestrina
MGP_SPRETEiJ_G0019321	Snrnp48	100	85.546	ENSMLEG00000034004	SNRNP48	100	86.431	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0019321	Snrnp48	75	48.627	ENSMAMG00000018673	snrnp48	83	43.732	Mastacembelus_armatus
MGP_SPRETEiJ_G0019321	Snrnp48	82	64.286	ENSMGAG00000006037	SNRNP48	99	63.699	Meleagris_gallopavo
MGP_SPRETEiJ_G0019321	Snrnp48	100	93.175	ENSMAUG00000011944	Snrnp48	100	93.175	Mesocricetus_auratus
MGP_SPRETEiJ_G0019321	Snrnp48	100	86.136	ENSMICG00000012497	SNRNP48	100	87.021	Microcebus_murinus
MGP_SPRETEiJ_G0019321	Snrnp48	100	92.878	ENSMOCG00000015555	Snrnp48	100	92.878	Microtus_ochrogaster
MGP_SPRETEiJ_G0019321	Snrnp48	54	52.432	ENSMMOG00000003072	-	58	52.432	Mola_mola
MGP_SPRETEiJ_G0019321	Snrnp48	99	68.696	ENSMODG00000009996	SNRNP48	93	68.986	Monodelphis_domestica
MGP_SPRETEiJ_G0019321	Snrnp48	75	48.828	ENSMALG00000005725	snrnp48	82	47.183	Monopterus_albus
MGP_SPRETEiJ_G0019321	Snrnp48	100	98.220	MGP_CAROLIEiJ_G0018441	Snrnp48	100	98.220	Mus_caroli
MGP_SPRETEiJ_G0019321	Snrnp48	100	99.110	ENSMUSG00000021431	Snrnp48	100	99.110	Mus_musculus
MGP_SPRETEiJ_G0019321	Snrnp48	100	97.329	MGP_PahariEiJ_G0019509	Snrnp48	100	97.329	Mus_pahari
MGP_SPRETEiJ_G0019321	Snrnp48	99	89.349	ENSNGAG00000004849	Snrnp48	99	89.349	Nannospalax_galili
MGP_SPRETEiJ_G0019321	Snrnp48	75	47.266	ENSNBRG00000012127	snrnp48	95	41.813	Neolamprologus_brichardi
MGP_SPRETEiJ_G0019321	Snrnp48	100	85.546	ENSNLEG00000011667	SNRNP48	100	86.431	Nomascus_leucogenys
MGP_SPRETEiJ_G0019321	Snrnp48	95	78.328	ENSOPRG00000015471	SNRNP48	100	77.709	Ochotona_princeps
MGP_SPRETEiJ_G0019321	Snrnp48	95	44.753	ENSONIG00000001520	snrnp48	95	41.311	Oreochromis_niloticus
MGP_SPRETEiJ_G0019321	Snrnp48	62	58.602	ENSOANG00000019888	-	100	62.500	Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0019321	Snrnp48	85	87.063	ENSOCUG00000005168	SNRNP48	100	86.842	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0019321	Snrnp48	89	47.403	ENSORLG00000015654	snrnp48	94	45.087	Oryzias_latipes
MGP_SPRETEiJ_G0019321	Snrnp48	89	46.429	ENSORLG00020015976	snrnp48	82	44.575	Oryzias_latipes_hni
MGP_SPRETEiJ_G0019321	Snrnp48	89	47.403	ENSORLG00015022379	snrnp48	81	45.665	Oryzias_latipes_hsok
MGP_SPRETEiJ_G0019321	Snrnp48	96	44.109	ENSOMEG00000022007	snrnp48	95	43.188	Oryzias_melastigma
MGP_SPRETEiJ_G0019321	Snrnp48	91	84.918	ENSOGAG00000005275	SNRNP48	96	84.227	Otolemur_garnettii
MGP_SPRETEiJ_G0019321	Snrnp48	85	84.321	ENSOARG00000017319	SNRNP48	100	84.321	Ovis_aries
MGP_SPRETEiJ_G0019321	Snrnp48	100	85.546	ENSPPAG00000032873	SNRNP48	100	86.431	Pan_paniscus
MGP_SPRETEiJ_G0019321	Snrnp48	100	86.431	ENSPPRG00000004283	SNRNP48	100	86.431	Panthera_pardus
MGP_SPRETEiJ_G0019321	Snrnp48	85	86.411	ENSPTIG00000013502	SNRNP48	100	86.411	Panthera_tigris_altaica
MGP_SPRETEiJ_G0019321	Snrnp48	100	85.546	ENSPTRG00000017703	SNRNP48	100	86.431	Pan_troglodytes
MGP_SPRETEiJ_G0019321	Snrnp48	100	85.546	ENSPANG00000000771	SNRNP48	100	86.431	Papio_anubis
MGP_SPRETEiJ_G0019321	Snrnp48	95	47.024	ENSPKIG00000013703	snrnp48	63	46.866	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0019321	Snrnp48	84	64.120	ENSPSIG00000002213	SNRNP48	94	64.120	Pelodiscus_sinensis
MGP_SPRETEiJ_G0019321	Snrnp48	74	47.860	ENSPMGG00000008120	snrnp48	90	47.860	Periophthalmus_magnuspinnatus
MGP_SPRETEiJ_G0019321	Snrnp48	100	93.769	ENSPEMG00000008872	Snrnp48	100	93.769	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0019321	Snrnp48	75	50.196	ENSPFOG00000003578	snrnp48	93	43.953	Poecilia_formosa
MGP_SPRETEiJ_G0019321	Snrnp48	69	49.145	ENSPLAG00000002290	snrnp48	79	49.145	Poecilia_latipinna
MGP_SPRETEiJ_G0019321	Snrnp48	75	49.412	ENSPMEG00000018033	snrnp48	93	43.363	Poecilia_mexicana
MGP_SPRETEiJ_G0019321	Snrnp48	74	49.402	ENSPREG00000018541	snrnp48	93	44.248	Poecilia_reticulata
MGP_SPRETEiJ_G0019321	Snrnp48	100	84.071	ENSPPYG00000016209	SNRNP48	100	84.956	Pongo_abelii
MGP_SPRETEiJ_G0019321	Snrnp48	74	82.143	ENSPCAG00000011991	SNRNP48	99	68.165	Procavia_capensis
MGP_SPRETEiJ_G0019321	Snrnp48	100	84.366	ENSPVAG00000002854	SNRNP48	100	84.366	Pteropus_vampyrus
MGP_SPRETEiJ_G0019321	Snrnp48	75	47.656	ENSPNYG00000015399	snrnp48	90	45.329	Pundamilia_nyererei
MGP_SPRETEiJ_G0019321	Snrnp48	100	94.955	ENSRNOG00000013756	Snrnp48	100	94.955	Rattus_norvegicus
MGP_SPRETEiJ_G0019321	Snrnp48	92	85.806	ENSRBIG00000043856	SNRNP48	98	85.806	Rhinopithecus_bieti
MGP_SPRETEiJ_G0019321	Snrnp48	100	85.251	ENSRROG00000043229	SNRNP48	100	86.136	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0019321	Snrnp48	100	85.546	ENSSBOG00000019486	SNRNP48	100	86.431	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0019321	Snrnp48	99	69.628	ENSSHAG00000014483	SNRNP48	100	69.628	Sarcophilus_harrisii
MGP_SPRETEiJ_G0019321	Snrnp48	74	51.953	ENSSFOG00015006610	snrnp48	70	48.495	Scleropages_formosus
MGP_SPRETEiJ_G0019321	Snrnp48	85	46.181	ENSSDUG00000014953	snrnp48	92	43.731	Seriola_dumerili
MGP_SPRETEiJ_G0019321	Snrnp48	85	45.486	ENSSLDG00000005989	snrnp48	92	43.072	Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0019321	Snrnp48	84	64.094	ENSSPUG00000006257	SNRNP48	85	65.772	Sphenodon_punctatus
MGP_SPRETEiJ_G0019321	Snrnp48	96	42.643	ENSSPAG00000006454	snrnp48	93	43.491	Stegastes_partitus
MGP_SPRETEiJ_G0019321	Snrnp48	83	61.775	ENSTGUG00000007575	SNRNP48	93	61.775	Taeniopygia_guttata
MGP_SPRETEiJ_G0019321	Snrnp48	74	49.801	ENSTRUG00000007031	snrnp48	92	45.181	Takifugu_rubripes
MGP_SPRETEiJ_G0019321	Snrnp48	75	46.275	ENSTNIG00000012977	-	75	46.275	Tetraodon_nigroviridis
MGP_SPRETEiJ_G0019321	Snrnp48	100	80.220	ENSTBEG00000015620	SNRNP48	100	71.006	Tupaia_belangeri
MGP_SPRETEiJ_G0019321	Snrnp48	100	85.841	ENSTTRG00000016715	SNRNP48	100	85.841	Tursiops_truncatus
MGP_SPRETEiJ_G0019321	Snrnp48	100	86.136	ENSUAMG00000003690	SNRNP48	100	87.021	Ursus_americanus
MGP_SPRETEiJ_G0019321	Snrnp48	85	81.882	ENSVPAG00000003557	SNRNP48	100	81.882	Vicugna_pacos
MGP_SPRETEiJ_G0019321	Snrnp48	99	86.350	ENSVVUG00000004996	SNRNP48	99	86.350	Vulpes_vulpes
MGP_SPRETEiJ_G0019321	Snrnp48	86	52.843	ENSXETG00000020447	snrnp48	97	51.929	Xenopus_tropicalis
MGP_SPRETEiJ_G0019321	Snrnp48	69	48.511	ENSXCOG00000004478	snrnp48	71	48.511	Xiphophorus_couchianus
MGP_SPRETEiJ_G0019321	Snrnp48	84	47.535	ENSXMAG00000013595	snrnp48	93	44.838	Xiphophorus_maculatus