EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0019515 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Plus strand
Length: 92129 bases
Position: chr13:61001054-61093182
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0036380	ResIII	PF04851.15	1.6e-11	1	1
MGP_SPRETEiJ_P0036383	ResIII	PF04851.15	2.1e-11	1	1
MGP_SPRETEiJ_P0036379	ResIII	PF04851.15	2.2e-11	1	1
MGP_SPRETEiJ_P0036377	ResIII	PF04851.15	1.2e-10	1	1
MGP_SPRETEiJ_P0036384	ResIII	PF04851.15	1.2e-10	1	1
MGP_SPRETEiJ_P0036376	ResIII	PF04851.15	1e-09	1	1
MGP_SPRETEiJ_P0036380	DEAD	PF00270.29	4e-07	1	1
MGP_SPRETEiJ_P0036384	DEAD	PF00270.29	4.6e-07	1	1
MGP_SPRETEiJ_P0036383	DEAD	PF00270.29	5.8e-07	1	1
MGP_SPRETEiJ_P0036379	DEAD	PF00270.29	6.2e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0036383	-	2527	-	MGP_SPRETEiJ_P0036383	684 (aa)	-	-
MGP_SPRETEiJ_T0036382	-	1961	-	MGP_SPRETEiJ_P0036382	191 (aa)	-	-
MGP_SPRETEiJ_T0036381	-	736	-	MGP_SPRETEiJ_P0036381	204 (aa)	-	-
MGP_SPRETEiJ_T0036380	-	1888	-	MGP_SPRETEiJ_P0036380	582 (aa)	-	-
MGP_SPRETEiJ_T0036376	-	1592	-	MGP_SPRETEiJ_P0036376	467 (aa)	-	-
MGP_SPRETEiJ_T0036377	-	3436	-	MGP_SPRETEiJ_P0036377	842 (aa)	-	-
MGP_SPRETEiJ_T0036385	-	760	-	MGP_SPRETEiJ_P0036385	152 (aa)	-	-
MGP_SPRETEiJ_T0036384	-	1726	-	MGP_SPRETEiJ_P0036384	574 (aa)	-	-
MGP_SPRETEiJ_T0036387	-	2579	-	MGP_SPRETEiJ_P0036387	592 (aa)	-	-
MGP_SPRETEiJ_T0036378	-	1801	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0036379	-	2690	-	MGP_SPRETEiJ_P0036379	699 (aa)	-	-
MGP_SPRETEiJ_T0036386	-	959	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0019515's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0019515's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_SPRETEiJ_G0019515	-	93	41.818	MGP_SPRETEiJ_G0034192	Smarca1	71	30.174
MGP_SPRETEiJ_G0019515	-	81	30.021	MGP_SPRETEiJ_G0026347	Chd1l	50	32.657
MGP_SPRETEiJ_G0019515	-	85	30.066	MGP_SPRETEiJ_G0026758	Rad54b	61	30.233

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0019515	-	100	89.444	ENSG00000182150	ERCC6L2	100	96.341	Homo_sapiens
MGP_SPRETEiJ_G0019515	-	100	85.763	ENSAMEG00000011657	ERCC6L2	100	86.179	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0019515	-	93	69.298	ENSATEG00000016700	ercc6l2	58	52.532	Anabas_testudineus
MGP_SPRETEiJ_G0019515	-	99	75.842	ENSAPLG00000006105	ERCC6L2	99	74.892	Anas_platyrhynchos
MGP_SPRETEiJ_G0019515	-	100	75.877	ENSACAG00000012947	ERCC6L2	100	75.912	Anolis_carolinensis
MGP_SPRETEiJ_G0019515	-	93	68.421	ENSACLG00000015088	ercc6l2	66	62.930	Astatotilapia_calliptera
MGP_SPRETEiJ_G0019515	-	100	88.857	ENSCJAG00000008862	ERCC6L2	98	88.857	Callithrix_jacchus
MGP_SPRETEiJ_G0019515	-	99	87.994	ENSCAFG00000001219	ERCC6L2	84	79.974	Canis_familiaris
MGP_SPRETEiJ_G0019515	-	100	89.181	ENSTSYG00000013871	ERCC6L2	99	88.143	Carlito_syrichta
MGP_SPRETEiJ_G0019515	-	91	80.796	ENSCAPG00000009212	ERCC6L2	100	80.796	Cavia_aperea
MGP_SPRETEiJ_G0019515	-	99	87.262	ENSCPOG00000004544	-	98	84.797	Cavia_porcellus
MGP_SPRETEiJ_G0019515	-	100	88.730	ENSCCAG00000026980	ERCC6L2	98	88.730	Cebus_capucinus
MGP_SPRETEiJ_G0019515	-	93	91.228	ENSCHOG00000006282	ERCC6L2	98	76.286	Choloepus_hoffmanni
MGP_SPRETEiJ_G0019515	-	99	79.649	ENSCPBG00000005414	ERCC6L2	51	66.421	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0019515	-	100	88.445	ENSCANG00000039934	ERCC6L2	98	88.445	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0019515	-	100	93.275	ENSCGRG00001022738	Ercc6l2	99	92.418	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0019515	-	99	87.904	ENSCGRG00000015854	Ercc6l2	99	87.904	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0019515	-	98	86.652	ENSDORG00000010788	Ercc6l2	99	87.090	Dipodomys_ordii
MGP_SPRETEiJ_G0019515	-	99	84.503	ENSETEG00000010686	ERCC6L2	98	83.571	Echinops_telfairi
MGP_SPRETEiJ_G0019515	-	84	90.323	ENSEEUG00000009341	ERCC6L2	99	69.900	Erinaceus_europaeus
MGP_SPRETEiJ_G0019515	-	99	77.419	ENSFALG00000003400	ERCC6L2	64	76.923	Ficedula_albicollis
MGP_SPRETEiJ_G0019515	-	99	88.012	ENSFDAG00000000805	ERCC6L2	99	86.981	Fukomys_damarensis
MGP_SPRETEiJ_G0019515	-	93	66.667	ENSGMOG00000007751	ercc6l2	63	63.411	Gadus_morhua
MGP_SPRETEiJ_G0019515	-	99	75.695	ENSGALG00000012621	ERCC6L2	53	64.419	Gallus_gallus
MGP_SPRETEiJ_G0019515	-	93	65.789	ENSGACG00000006992	ercc6l2	67	58.516	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0019515	-	99	80.234	ENSGAGG00000021675	ERCC6L2	51	67.491	Gopherus_agassizii
MGP_SPRETEiJ_G0019515	-	100	89.016	ENSGGOG00000002705	ERCC6L2	98	89.016	Gorilla_gorilla
MGP_SPRETEiJ_G0019515	-	93	89.091	ENSHGLG00000009488	ERCC6L2	95	93.370	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0019515	-	100	87.737	ENSJJAG00000018150	Ercc6l2	100	87.019	Jaculus_jaculus
MGP_SPRETEiJ_G0019515	-	96	79.675	ENSLACG00000011767	ERCC6L2	54	62.397	Latimeria_chalumnae
MGP_SPRETEiJ_G0019515	-	100	87.318	ENSLAFG00000013092	ERCC6L2	100	86.486	Loxodonta_africana
MGP_SPRETEiJ_G0019515	-	100	88.017	ENSMNEG00000035630	ERCC6L2	98	88.017	Macaca_nemestrina
MGP_SPRETEiJ_G0019515	-	100	88.302	ENSMLEG00000019530	ERCC6L2	98	88.302	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0019515	-	99	94.143	ENSMAUG00000004820	-	100	88.636	Mesocricetus_auratus
MGP_SPRETEiJ_G0019515	-	100	89.872	ENSMICG00000029160	ERCC6L2	98	89.872	Microcebus_murinus
MGP_SPRETEiJ_G0019515	-	100	93.148	ENSMOCG00000019362	-	100	93.148	Microtus_ochrogaster
MGP_SPRETEiJ_G0019515	-	99	61.561	ENSMMOG00000001419	ercc6l2	59	61.561	Mola_mola
MGP_SPRETEiJ_G0019515	-	99	63.597	ENSMALG00000016933	ercc6l2	60	67.628	Monopterus_albus
MGP_SPRETEiJ_G0019515	-	100	99.428	MGP_CAROLIEiJ_G0018635	-	100	99.428	Mus_caroli
MGP_SPRETEiJ_G0019515	-	100	99.572	ENSMUSG00000021470	Ercc6l2	100	99.572	Mus_musculus
MGP_SPRETEiJ_G0019515	-	100	98.830	MGP_PahariEiJ_G0019699	-	100	98.830	Mus_pahari
MGP_SPRETEiJ_G0019515	-	94	87.695	ENSMPUG00000006738	ERCC6L2	80	82.289	Mustela_putorius_furo
MGP_SPRETEiJ_G0019515	-	93	92.982	ENSMLUG00000000845	ERCC6L2	98	85.328	Myotis_lucifugus
MGP_SPRETEiJ_G0019515	-	100	90.429	ENSNGAG00000016174	Ercc6l2	99	90.429	Nannospalax_galili
MGP_SPRETEiJ_G0019515	-	100	89.016	ENSNLEG00000016784	ERCC6L2	98	89.016	Nomascus_leucogenys
MGP_SPRETEiJ_G0019515	-	92	88.112	ENSOPRG00000011647	ERCC6L2	100	88.264	Ochotona_princeps
MGP_SPRETEiJ_G0019515	-	99	88.141	ENSODEG00000016588	ERCC6L2	98	89.720	Octodon_degus
MGP_SPRETEiJ_G0019515	-	93	67.544	ENSONIG00000015139	ercc6l2	100	60.452	Oreochromis_niloticus
MGP_SPRETEiJ_G0019515	-	100	89.796	ENSOCUG00000000442	-	100	88.445	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0019515	-	99	63.104	ENSORLG00000004287	ercc6l2	70	56.915	Oryzias_latipes
MGP_SPRETEiJ_G0019515	-	93	69.298	ENSORLG00020002133	ercc6l2	54	56.510	Oryzias_latipes_hni
MGP_SPRETEiJ_G0019515	-	97	64.567	ENSORLG00015010250	ercc6l2	71	56.373	Oryzias_latipes_hsok
MGP_SPRETEiJ_G0019515	-	93	69.298	ENSOMEG00000021983	ercc6l2	54	56.397	Oryzias_melastigma
MGP_SPRETEiJ_G0019515	-	92	91.608	ENSOGAG00000003146	ERCC6L2	66	91.817	Otolemur_garnettii
MGP_SPRETEiJ_G0019515	-	99	90.323	ENSOARG00000008546	ERCC6L2	85	79.667	Ovis_aries
MGP_SPRETEiJ_G0019515	-	100	89.444	ENSPPAG00000035061	ERCC6L2	98	89.444	Pan_paniscus
MGP_SPRETEiJ_G0019515	-	100	87.571	ENSPPRG00000019238	ERCC6L2	98	87.571	Panthera_pardus
MGP_SPRETEiJ_G0019515	-	100	87.143	ENSPTIG00000009148	ERCC6L2	98	87.143	Panthera_tigris_altaica
MGP_SPRETEiJ_G0019515	-	100	89.301	ENSPTRG00000048689	ERCC6L2	98	89.301	Pan_troglodytes
MGP_SPRETEiJ_G0019515	-	93	70.175	ENSPKIG00000016799	ercc6l2	60	53.532	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0019515	-	100	80.263	ENSPSIG00000010627	ERCC6L2	100	80.292	Pelodiscus_sinensis
MGP_SPRETEiJ_G0019515	-	93	65.789	ENSPMGG00000016547	ercc6l2	63	56.941	Periophthalmus_magnuspinnatus
MGP_SPRETEiJ_G0019515	-	99	92.679	ENSPEMG00000006631	-	100	88.731	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0019515	-	93	88.596	ENSPCIG00000020095	-	72	70.609	Phascolarctos_cinereus
MGP_SPRETEiJ_G0019515	-	99	89.605	ENSPPYG00000019412	-	57	79.132	Pongo_abelii
MGP_SPRETEiJ_G0019515	-	100	85.965	ENSPCOG00000026714	ERCC6L2	98	85.429	Propithecus_coquereli
MGP_SPRETEiJ_G0019515	-	92	88.811	ENSPVAG00000003926	ERCC6L2	98	80.456	Pteropus_vampyrus
MGP_SPRETEiJ_G0019515	-	93	68.421	ENSPNYG00000015347	ercc6l2	58	66.884	Pundamilia_nyererei
MGP_SPRETEiJ_G0019515	-	99	96.486	ENSRNOG00000019175	Ercc6l2	55	93.705	Rattus_norvegicus
MGP_SPRETEiJ_G0019515	-	100	84.857	ENSRBIG00000018434	ERCC6L2	98	84.857	Rhinopithecus_bieti
MGP_SPRETEiJ_G0019515	-	100	88.302	ENSRROG00000029000	ERCC6L2	98	88.302	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0019515	-	93	74.820	ENSSHAG00000000781	-	100	79.328	Sarcophilus_harrisii
MGP_SPRETEiJ_G0019515	-	93	68.421	ENSSLDG00000018663	ercc6l2	61	63.705	Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0019515	-	99	77.013	ENSSPUG00000004336	ERCC6L2	54	75.375	Sphenodon_punctatus
MGP_SPRETEiJ_G0019515	-	93	67.544	ENSSPAG00000004484	ercc6l2	60	60.776	Stegastes_partitus
MGP_SPRETEiJ_G0019515	-	99	76.833	ENSTGUG00000000524	ERCC6L2	100	76.754	Taeniopygia_guttata
MGP_SPRETEiJ_G0019515	-	93	69.298	ENSTRUG00000014634	ercc6l2	64	59.740	Takifugu_rubripes
MGP_SPRETEiJ_G0019515	-	93	79.137	ENSTBEG00000014213	ERCC6L2	87	94.231	Tupaia_belangeri
MGP_SPRETEiJ_G0019515	-	100	82.739	ENSTTRG00000005372	ERCC6L2	98	82.739	Tursiops_truncatus
MGP_SPRETEiJ_G0019515	-	97	88.007	ENSVPAG00000004701	ERCC6L2	99	89.082	Vicugna_pacos
MGP_SPRETEiJ_G0019515	-	93	79.825	ENSXETG00000014835	ercc6l2	63	72.165	Xenopus_tropicalis