EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0019543 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Minus strand
Length: 20128 bases
Position: chr13:63199012-63219139
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0036445	zf-C2H2	PF00096.26	1.9e-44	1	8
MGP_SPRETEiJ_P0036445	zf-C2H2	PF00096.26	1.9e-44	2	8
MGP_SPRETEiJ_P0036445	zf-C2H2	PF00096.26	1.9e-44	3	8
MGP_SPRETEiJ_P0036445	zf-C2H2	PF00096.26	1.9e-44	4	8
MGP_SPRETEiJ_P0036445	zf-C2H2	PF00096.26	1.9e-44	5	8
MGP_SPRETEiJ_P0036445	zf-C2H2	PF00096.26	1.9e-44	6	8
MGP_SPRETEiJ_P0036445	zf-C2H2	PF00096.26	1.9e-44	7	8
MGP_SPRETEiJ_P0036445	zf-C2H2	PF00096.26	1.9e-44	8	8
MGP_SPRETEiJ_P0036445	zf-met	PF12874.7	2.7e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0036445	-	2902	-	MGP_SPRETEiJ_P0036445	432 (aa)	-	-
MGP_SPRETEiJ_T0036447	-	5127	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0019543's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0019543's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_SPRETEiJ_G0019543	-	68	39.592	MGP_SPRETEiJ_G0031614	-	85	39.592
MGP_SPRETEiJ_G0019543	-	80	42.975	MGP_SPRETEiJ_G0032697	Zfp1	99	42.975
MGP_SPRETEiJ_G0019543	-	83	41.872	MGP_SPRETEiJ_G0022057	Zscan10	98	44.105
MGP_SPRETEiJ_G0019543	-	80	44.906	MGP_SPRETEiJ_G0022052	Zfp945	99	44.906
MGP_SPRETEiJ_G0019543	-	68	46.275	MGP_SPRETEiJ_G0031612	Zfp768	55	46.275
MGP_SPRETEiJ_G0019543	-	79	46.087	MGP_SPRETEiJ_G0017272	Zfp867	96	46.087
MGP_SPRETEiJ_G0019543	-	62	50.000	MGP_SPRETEiJ_G0027723	Zbtb17	56	41.532
MGP_SPRETEiJ_G0019543	-	74	56.757	MGP_SPRETEiJ_G0030709	-	98	56.757
MGP_SPRETEiJ_G0019543	-	78	54.000	MGP_SPRETEiJ_G0020852	Zfp251	94	54.000
MGP_SPRETEiJ_G0019543	-	64	46.121	MGP_SPRETEiJ_G0030524	Zfp59	81	46.121
MGP_SPRETEiJ_G0019543	-	73	44.048	MGP_SPRETEiJ_G0030525	-	91	44.048
MGP_SPRETEiJ_G0019543	-	73	44.048	MGP_SPRETEiJ_G0030526	-	93	48.750
MGP_SPRETEiJ_G0019543	-	78	57.273	MGP_SPRETEiJ_G0019560	Zfp748	99	57.273
MGP_SPRETEiJ_G0019543	-	89	33.882	MGP_SPRETEiJ_G0030453	Zfp574	81	45.968
MGP_SPRETEiJ_G0019543	-	78	55.204	MGP_SPRETEiJ_G0025181	Zfp661	95	55.204
MGP_SPRETEiJ_G0019543	-	69	40.816	MGP_SPRETEiJ_G0029467	Prdm5	82	40.816
MGP_SPRETEiJ_G0019543	-	63	56.944	MGP_SPRETEiJ_G0030421	-	99	56.944
MGP_SPRETEiJ_G0019543	-	78	55.814	MGP_SPRETEiJ_G0030420	Zfp108	77	55.814
MGP_SPRETEiJ_G0019543	-	78	56.818	MGP_SPRETEiJ_G0030423	Zfp94	96	56.818
MGP_SPRETEiJ_G0019543	-	62	57.432	MGP_SPRETEiJ_G0030422	Zfp61	61	57.432
MGP_SPRETEiJ_G0019543	-	82	46.992	MGP_SPRETEiJ_G0030713	Zfp715	78	52.273
MGP_SPRETEiJ_G0019543	-	66	44.094	MGP_SPRETEiJ_G0015474	Zbtb41	50	44.094
MGP_SPRETEiJ_G0019543	-	69	55.251	MGP_SPRETEiJ_G0030586	Zfp420	98	55.251
MGP_SPRETEiJ_G0019543	-	73	42.604	MGP_SPRETEiJ_G0029346	Repin1	95	42.604
MGP_SPRETEiJ_G0019543	-	78	50.376	MGP_SPRETEiJ_G0019544	Zfp759	100	51.128
MGP_SPRETEiJ_G0019543	-	67	44.949	MGP_SPRETEiJ_G0019129	Zkscan4	76	46.457
MGP_SPRETEiJ_G0019543	-	63	37.179	MGP_SPRETEiJ_G0025644	Zfp64	69	34.599
MGP_SPRETEiJ_G0019543	-	62	47.644	MGP_SPRETEiJ_G0030188	Zfp628	60	46.500
MGP_SPRETEiJ_G0019543	-	78	50.000	MGP_SPRETEiJ_G0030415	Zfp112	69	50.000
MGP_SPRETEiJ_G0019543	-	63	56.552	MGP_SPRETEiJ_G0030416	Zfp235	61	56.552
MGP_SPRETEiJ_G0019543	-	79	56.463	MGP_SPRETEiJ_G0030417	Zfp114	70	56.463
MGP_SPRETEiJ_G0019543	-	76	46.237	MGP_SPRETEiJ_G0023360	Zfp236	65	46.237
MGP_SPRETEiJ_G0019543	-	62	47.305	MGP_SPRETEiJ_G0028173	Zbtb49	64	49.315
MGP_SPRETEiJ_G0019543	-	68	39.592	MGP_SPRETEiJ_G0031613	-	85	39.592
MGP_SPRETEiJ_G0019543	-	64	41.026	MGP_SPRETEiJ_G0030196	-	72	37.000
MGP_SPRETEiJ_G0019543	-	66	45.565	MGP_SPRETEiJ_G0017233	Zfp672	98	46.154
MGP_SPRETEiJ_G0019543	-	62	51.724	MGP_SPRETEiJ_G0029809	Zfp637	71	46.875
MGP_SPRETEiJ_G0019543	-	63	38.934	MGP_SPRETEiJ_G0032539	Zfp319	95	38.938

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0019543	-	62	53.061	ENSAOCG00000013672	-	94	53.061	Amphiprion_ocellaris
MGP_SPRETEiJ_G0019543	-	69	48.095	ENSACLG00000008821	-	95	48.095	Astatotilapia_calliptera
MGP_SPRETEiJ_G0019543	-	68	48.163	ENSAMXG00000040677	-	84	48.163	Astyanax_mexicanus
MGP_SPRETEiJ_G0019543	-	63	48.000	ENSAMXG00000036241	-	83	48.000	Astyanax_mexicanus
MGP_SPRETEiJ_G0019543	-	65	46.575	ENSAMXG00000036633	-	62	50.898	Astyanax_mexicanus
MGP_SPRETEiJ_G0019543	-	68	51.232	ENSAMXG00000043423	-	78	51.232	Astyanax_mexicanus
MGP_SPRETEiJ_G0019543	-	68	50.000	ENSAMXG00000037981	-	79	50.000	Astyanax_mexicanus
MGP_SPRETEiJ_G0019543	-	77	51.327	ENSTSYG00000006246	-	99	51.327	Carlito_syrichta
MGP_SPRETEiJ_G0019543	-	78	82.561	ENSCGRG00001012803	-	94	79.670	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0019543	-	69	48.026	ENSCGRG00001019143	-	93	47.778	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0019543	-	78	53.392	ENSCGRG00001024303	-	99	53.392	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0019543	-	72	53.000	ENSCGRG00000008531	-	98	53.793	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0019543	-	78	82.561	ENSCGRG00000009742	-	94	79.670	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0019543	-	65	43.379	ENSEBUG00000015993	-	66	43.379	Eptatretus_burgeri
MGP_SPRETEiJ_G0019543	-	67	54.167	ENSEBUG00000015834	-	84	54.167	Eptatretus_burgeri
MGP_SPRETEiJ_G0019543	-	85	47.660	ENSEBUG00000003590	-	88	47.660	Eptatretus_burgeri
MGP_SPRETEiJ_G0019543	-	73	45.852	ENSEBUG00000007375	-	84	45.852	Eptatretus_burgeri
MGP_SPRETEiJ_G0019543	-	68	47.863	ENSEBUG00000003236	-	93	46.774	Eptatretus_burgeri
MGP_SPRETEiJ_G0019543	-	68	47.500	ENSEBUG00000017017	-	67	45.333	Eptatretus_burgeri
MGP_SPRETEiJ_G0019543	-	65	46.696	ENSEBUG00000001121	-	81	46.696	Eptatretus_burgeri
MGP_SPRETEiJ_G0019543	-	68	49.246	ENSIPUG00000013315	-	93	49.246	Ictalurus_punctatus
MGP_SPRETEiJ_G0019543	-	78	52.941	ENSMAUG00000016437	-	100	51.327	Mesocricetus_auratus
MGP_SPRETEiJ_G0019543	-	89	69.639	ENSMAUG00000005691	-	98	68.382	Mesocricetus_auratus
MGP_SPRETEiJ_G0019543	-	87	79.841	ENSMOCG00000000365	-	100	79.841	Microtus_ochrogaster
MGP_SPRETEiJ_G0019543	-	78	55.882	MGP_CAROLIEiJ_G0018683	Zfp493	99	55.882	Mus_caroli
MGP_SPRETEiJ_G0019543	-	100	93.243	MGP_CAROLIEiJ_G0018660	-	100	93.243	Mus_caroli
MGP_SPRETEiJ_G0019543	-	78	56.897	ENSMUSG00000091474	2610021A01Rik	70	56.897	Mus_musculus
MGP_SPRETEiJ_G0019543	-	100	93.261	ENSMUSG00000074824	Rslcan18	100	77.391	Mus_musculus
MGP_SPRETEiJ_G0019543	-	77	55.932	MGP_PahariEiJ_G0012839	-	71	55.932	Mus_pahari
MGP_SPRETEiJ_G0019543	-	65	42.778	ENSPMAG00000000404	-	99	42.778	Petromyzon_marinus
MGP_SPRETEiJ_G0019543	-	71	51.724	ENSPNAG00000014492	-	89	51.724	Pygocentrus_nattereri
MGP_SPRETEiJ_G0019543	-	66	49.012	ENSPNAG00000003017	-	88	49.012	Pygocentrus_nattereri
MGP_SPRETEiJ_G0019543	-	78	56.376	ENSSSCG00000040389	-	98	56.376	Sus_scrofa
MGP_SPRETEiJ_G0019543	-	75	45.806	ENSTRUG00000014476	-	87	45.806	Takifugu_rubripes