EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0019711 (Gene tree)
Gene ID: -
Gene Symbol: Ptcd2
Alias: 1190005P08Rik
Full Name: pentatricopeptide repeat domain 2
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Minus strand
Length: 24837 bases
Position: chr13:95944246-95969082
Accession: 1916177
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0036933	MRP-S27	PF10037.9	1e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0036933	-	1675	-	MGP_SPRETEiJ_P0036933	381 (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0019711's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0019711's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0019711	Ptcd2	100	73.890	ENSG00000049883	PTCD2	100	74.384	Homo_sapiens
MGP_SPRETEiJ_G0019711	Ptcd2	91	46.839	ENSAPOG00000020682	ptcd2	91	46.839	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0019711	Ptcd2	100	70.757	ENSAMEG00000007194	PTCD2	99	70.757	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0019711	Ptcd2	91	42.120	ENSACIG00000002053	ptcd2	100	42.120	Amphilophus_citrinellus
MGP_SPRETEiJ_G0019711	Ptcd2	91	46.264	ENSAOCG00000006616	ptcd2	89	46.264	Amphiprion_ocellaris
MGP_SPRETEiJ_G0019711	Ptcd2	91	46.705	ENSAPEG00000022926	ptcd2	89	46.705	Amphiprion_percula
MGP_SPRETEiJ_G0019711	Ptcd2	93	57.627	ENSACAG00000009747	PTCD2	91	57.627	Anolis_carolinensis
MGP_SPRETEiJ_G0019711	Ptcd2	100	72.585	ENSANAG00000029353	PTCD2	99	72.585	Aotus_nancymaae
MGP_SPRETEiJ_G0019711	Ptcd2	91	45.402	ENSACLG00000027742	ptcd2	89	45.402	Astatotilapia_calliptera
MGP_SPRETEiJ_G0019711	Ptcd2	86	46.951	ENSAMXG00000029404	ptcd2	88	46.951	Astyanax_mexicanus
MGP_SPRETEiJ_G0019711	Ptcd2	100	71.354	ENSBTAG00000014675	PTCD2	100	71.354	Bos_taurus
MGP_SPRETEiJ_G0019711	Ptcd2	100	72.063	ENSCJAG00000016364	PTCD2	99	72.063	Callithrix_jacchus
MGP_SPRETEiJ_G0019711	Ptcd2	100	70.496	ENSCAFG00000007982	PTCD2	90	70.496	Canis_familiaris
MGP_SPRETEiJ_G0019711	Ptcd2	91	71.676	ENSCAFG00020019147	PTCD2	97	71.676	Canis_lupus_dingo
MGP_SPRETEiJ_G0019711	Ptcd2	100	72.396	ENSCHIG00000017118	PTCD2	100	72.396	Capra_hircus
MGP_SPRETEiJ_G0019711	Ptcd2	100	69.713	ENSCPOG00000040168	PTCD2	100	69.713	Cavia_porcellus
MGP_SPRETEiJ_G0019711	Ptcd2	100	71.540	ENSCCAG00000029389	-	99	71.540	Cebus_capucinus
MGP_SPRETEiJ_G0019711	Ptcd2	79	68.771	ENSCCAG00000021996	-	93	68.771	Cebus_capucinus
MGP_SPRETEiJ_G0019711	Ptcd2	100	73.107	ENSCATG00000019069	PTCD2	100	73.107	Cercocebus_atys
MGP_SPRETEiJ_G0019711	Ptcd2	96	73.569	ENSCLAG00000000072	PTCD2	96	73.569	Chinchilla_lanigera
MGP_SPRETEiJ_G0019711	Ptcd2	100	72.846	ENSCSAG00000015623	PTCD2	100	72.846	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0019711	Ptcd2	74	71.765	ENSCHOG00000010634	PTCD2	82	71.765	Choloepus_hoffmanni
MGP_SPRETEiJ_G0019711	Ptcd2	98	53.226	ENSCPBG00000000216	PTCD2	95	53.226	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0019711	Ptcd2	100	71.540	ENSCANG00000035636	PTCD2	99	71.540	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0019711	Ptcd2	100	80.052	ENSCGRG00001015289	Ptcd2	84	80.052	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0019711	Ptcd2	100	80.052	ENSCGRG00000006193	Ptcd2	84	80.052	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0019711	Ptcd2	91	44.828	ENSCVAG00000001285	ptcd2	89	44.828	Cyprinodon_variegatus
MGP_SPRETEiJ_G0019711	Ptcd2	93	46.629	ENSDARG00000035391	ptcd2	93	46.629	Danio_rerio
MGP_SPRETEiJ_G0019711	Ptcd2	100	69.191	ENSDNOG00000008719	PTCD2	100	69.191	Dasypus_novemcinctus
MGP_SPRETEiJ_G0019711	Ptcd2	100	72.093	ENSDORG00000004921	Ptcd2	100	72.093	Dipodomys_ordii
MGP_SPRETEiJ_G0019711	Ptcd2	100	63.802	ENSETEG00000016542	PTCD2	99	63.802	Echinops_telfairi
MGP_SPRETEiJ_G0019711	Ptcd2	100	71.728	ENSEASG00005018038	PTCD2	100	71.728	Equus_asinus_asinus
MGP_SPRETEiJ_G0019711	Ptcd2	100	71.728	ENSECAG00000007022	PTCD2	98	71.728	Equus_caballus
MGP_SPRETEiJ_G0019711	Ptcd2	100	66.057	ENSEEUG00000014031	PTCD2	99	66.057	Erinaceus_europaeus
MGP_SPRETEiJ_G0019711	Ptcd2	93	48.588	ENSELUG00000003584	ptcd2	92	48.588	Esox_lucius
MGP_SPRETEiJ_G0019711	Ptcd2	96	67.397	ENSFCAG00000045432	PTCD2	78	67.397	Felis_catus
MGP_SPRETEiJ_G0019711	Ptcd2	86	50.153	ENSFALG00000010299	PTCD2	99	50.153	Ficedula_albicollis
MGP_SPRETEiJ_G0019711	Ptcd2	100	70.757	ENSFDAG00000018461	PTCD2	100	70.757	Fukomys_damarensis
MGP_SPRETEiJ_G0019711	Ptcd2	92	49.432	ENSGMOG00000003637	ptcd2	91	49.432	Gadus_morhua
MGP_SPRETEiJ_G0019711	Ptcd2	93	49.153	ENSGALG00000038260	PTCD2	100	47.644	Gallus_gallus
MGP_SPRETEiJ_G0019711	Ptcd2	97	56.300	ENSGAGG00000021952	PTCD2	96	56.300	Gopherus_agassizii
MGP_SPRETEiJ_G0019711	Ptcd2	100	73.629	ENSGGOG00000010695	PTCD2	99	73.629	Gorilla_gorilla
MGP_SPRETEiJ_G0019711	Ptcd2	91	45.690	ENSHBUG00000009191	ptcd2	89	45.690	Haplochromis_burtoni
MGP_SPRETEiJ_G0019711	Ptcd2	100	69.452	ENSHGLG00000001234	PTCD2	100	69.452	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0019711	Ptcd2	100	69.452	ENSHGLG00100015419	PTCD2	100	69.452	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0019711	Ptcd2	95	47.253	ENSHCOG00000001703	ptcd2	92	47.253	Hippocampus_comes
MGP_SPRETEiJ_G0019711	Ptcd2	88	45.970	ENSIPUG00000006080	ptcd2	91	46.132	Ictalurus_punctatus
MGP_SPRETEiJ_G0019711	Ptcd2	99	73.228	ENSSTOG00000006596	PTCD2	99	73.228	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0019711	Ptcd2	100	73.890	ENSJJAG00000024388	Ptcd2	100	73.890	Jaculus_jaculus
MGP_SPRETEiJ_G0019711	Ptcd2	93	42.373	ENSKMAG00000009329	ptcd2	92	42.373	Kryptolebias_marmoratus
MGP_SPRETEiJ_G0019711	Ptcd2	97	44.504	ENSLBEG00000024871	ptcd2	94	44.504	Labrus_bergylta
MGP_SPRETEiJ_G0019711	Ptcd2	100	51.832	ENSLOCG00000011122	ptcd2	99	51.832	Lepisosteus_oculatus
MGP_SPRETEiJ_G0019711	Ptcd2	81	72.026	ENSLAFG00000004115	PTCD2	100	72.026	Loxodonta_africana
MGP_SPRETEiJ_G0019711	Ptcd2	100	72.846	ENSMFAG00000031516	PTCD2	99	72.846	Macaca_fascicularis
MGP_SPRETEiJ_G0019711	Ptcd2	100	72.846	ENSMNEG00000007537	PTCD2	100	72.846	Macaca_nemestrina
MGP_SPRETEiJ_G0019711	Ptcd2	100	73.368	ENSMLEG00000031093	PTCD2	99	73.368	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0019711	Ptcd2	96	46.575	ENSMAMG00000018529	ptcd2	94	46.575	Mastacembelus_armatus
MGP_SPRETEiJ_G0019711	Ptcd2	91	45.402	ENSMZEG00005003625	ptcd2	89	45.402	Maylandia_zebra
MGP_SPRETEiJ_G0019711	Ptcd2	91	49.425	ENSMGAG00000005033	PTCD2	100	49.425	Meleagris_gallopavo
MGP_SPRETEiJ_G0019711	Ptcd2	100	60.995	ENSMAUG00000020253	Ptcd2	100	60.995	Mesocricetus_auratus
MGP_SPRETEiJ_G0019711	Ptcd2	100	72.846	ENSMICG00000004535	PTCD2	99	72.846	Microcebus_murinus
MGP_SPRETEiJ_G0019711	Ptcd2	100	81.890	ENSMOCG00000019985	Ptcd2	100	81.890	Microtus_ochrogaster
MGP_SPRETEiJ_G0019711	Ptcd2	100	54.404	ENSMODG00000001695	PTCD2	100	54.404	Monodelphis_domestica
MGP_SPRETEiJ_G0019711	Ptcd2	91	47.701	ENSMALG00000022372	ptcd2	91	47.701	Monopterus_albus
MGP_SPRETEiJ_G0019711	Ptcd2	100	96.850	MGP_CAROLIEiJ_G0018829	Ptcd2	100	96.850	Mus_caroli
MGP_SPRETEiJ_G0019711	Ptcd2	100	98.950	ENSMUSG00000021650	Ptcd2	100	98.950	Mus_musculus
MGP_SPRETEiJ_G0019711	Ptcd2	100	92.913	MGP_PahariEiJ_G0015904	Ptcd2	100	92.913	Mus_pahari
MGP_SPRETEiJ_G0019711	Ptcd2	97	73.585	ENSMPUG00000014401	PTCD2	97	73.585	Mustela_putorius_furo
MGP_SPRETEiJ_G0019711	Ptcd2	100	70.496	ENSMLUG00000007374	PTCD2	99	70.496	Myotis_lucifugus
MGP_SPRETEiJ_G0019711	Ptcd2	100	75.979	ENSNGAG00000005027	Ptcd2	100	75.979	Nannospalax_galili
MGP_SPRETEiJ_G0019711	Ptcd2	91	45.690	ENSNBRG00000008174	ptcd2	91	45.690	Neolamprologus_brichardi
MGP_SPRETEiJ_G0019711	Ptcd2	87	44.545	ENSNBRG00000000092	-	100	44.545	Neolamprologus_brichardi
MGP_SPRETEiJ_G0019711	Ptcd2	100	72.324	ENSNLEG00000004516	PTCD2	99	72.324	Nomascus_leucogenys
MGP_SPRETEiJ_G0019711	Ptcd2	82	49.045	ENSMEUG00000014012	-	82	49.045	Notamacropus_eugenii
MGP_SPRETEiJ_G0019711	Ptcd2	100	71.279	ENSOPRG00000007290	PTCD2	99	71.279	Ochotona_princeps
MGP_SPRETEiJ_G0019711	Ptcd2	100	72.396	ENSODEG00000016417	PTCD2	100	72.396	Octodon_degus
MGP_SPRETEiJ_G0019711	Ptcd2	76	47.405	ENSONIG00000011269	ptcd2	85	47.405	Oreochromis_niloticus
MGP_SPRETEiJ_G0019711	Ptcd2	96	73.699	ENSOCUG00000007970	PTCD2	100	72.846	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0019711	Ptcd2	96	45.232	ENSORLG00000003851	ptcd2	92	45.232	Oryzias_latipes
MGP_SPRETEiJ_G0019711	Ptcd2	96	44.414	ENSORLG00020009823	ptcd2	94	44.414	Oryzias_latipes_hni
MGP_SPRETEiJ_G0019711	Ptcd2	92	45.714	ENSORLG00015016777	ptcd2	99	45.714	Oryzias_latipes_hsok
MGP_SPRETEiJ_G0019711	Ptcd2	94	43.056	ENSOMEG00000012396	ptcd2	86	43.056	Oryzias_melastigma
MGP_SPRETEiJ_G0019711	Ptcd2	100	70.235	ENSOGAG00000008390	PTCD2	99	70.235	Otolemur_garnettii
MGP_SPRETEiJ_G0019711	Ptcd2	100	71.615	ENSOARG00000005087	PTCD2	99	71.615	Ovis_aries
MGP_SPRETEiJ_G0019711	Ptcd2	100	73.629	ENSPPAG00000028480	PTCD2	99	73.629	Pan_paniscus
MGP_SPRETEiJ_G0019711	Ptcd2	100	73.890	ENSPTRG00000016968	PTCD2	99	73.890	Pan_troglodytes
MGP_SPRETEiJ_G0019711	Ptcd2	91	75.362	ENSPANG00000006611	PTCD2	89	75.362	Papio_anubis
MGP_SPRETEiJ_G0019711	Ptcd2	93	48.179	ENSPKIG00000019896	ptcd2	93	48.179	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0019711	Ptcd2	83	57.595	ENSPSIG00000014559	PTCD2	98	57.595	Pelodiscus_sinensis
MGP_SPRETEiJ_G0019711	Ptcd2	100	79.373	ENSPEMG00000000884	Ptcd2	100	79.373	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0019711	Ptcd2	100	56.250	ENSPCIG00000029047	PTCD2	100	56.250	Phascolarctos_cinereus
MGP_SPRETEiJ_G0019711	Ptcd2	91	44.540	ENSPLAG00000010456	ptcd2	91	44.540	Poecilia_latipinna
MGP_SPRETEiJ_G0019711	Ptcd2	91	44.540	ENSPREG00000021797	ptcd2	88	44.540	Poecilia_reticulata
MGP_SPRETEiJ_G0019711	Ptcd2	100	63.185	ENSPPYG00000015543	PTCD2	99	63.185	Pongo_abelii
MGP_SPRETEiJ_G0019711	Ptcd2	78	61.667	ENSPCAG00000006806	PTCD2	96	61.667	Procavia_capensis
MGP_SPRETEiJ_G0019711	Ptcd2	100	67.363	ENSPVAG00000010935	PTCD2	99	67.363	Pteropus_vampyrus
MGP_SPRETEiJ_G0019711	Ptcd2	91	45.402	ENSPNYG00000003122	ptcd2	89	45.402	Pundamilia_nyererei
MGP_SPRETEiJ_G0019711	Ptcd2	93	48.324	ENSPNAG00000021490	ptcd2	93	48.603	Pygocentrus_nattereri
MGP_SPRETEiJ_G0019711	Ptcd2	100	87.927	ENSRNOG00000028403	Ptcd2	100	87.927	Rattus_norvegicus
MGP_SPRETEiJ_G0019711	Ptcd2	100	68.407	ENSRBIG00000032929	PTCD2	99	68.407	Rhinopithecus_bieti
MGP_SPRETEiJ_G0019711	Ptcd2	100	72.585	ENSRROG00000000080	PTCD2	100	72.585	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0019711	Ptcd2	100	71.244	ENSSBOG00000018911	PTCD2	100	71.244	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0019711	Ptcd2	97	57.182	ENSSHAG00000003833	PTCD2	95	57.182	Sarcophilus_harrisii
MGP_SPRETEiJ_G0019711	Ptcd2	92	45.143	ENSSFOG00015015415	ptcd2	91	45.143	Scleropages_formosus
MGP_SPRETEiJ_G0019711	Ptcd2	92	44.286	ENSSMAG00000010350	ptcd2	91	44.286	Scophthalmus_maximus
MGP_SPRETEiJ_G0019711	Ptcd2	96	47.253	ENSSDUG00000008142	ptcd2	89	47.253	Seriola_dumerili
MGP_SPRETEiJ_G0019711	Ptcd2	96	46.978	ENSSLDG00000015284	ptcd2	93	46.978	Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0019711	Ptcd2	81	62.783	ENSSARG00000004983	PTCD2	99	62.783	Sorex_araneus
MGP_SPRETEiJ_G0019711	Ptcd2	93	50.562	ENSSPUG00000000176	PTCD2	90	50.562	Sphenodon_punctatus
MGP_SPRETEiJ_G0019711	Ptcd2	91	46.839	ENSSPAG00000008591	ptcd2	89	46.839	Stegastes_partitus
MGP_SPRETEiJ_G0019711	Ptcd2	100	71.654	ENSSSCG00000016975	PTCD2	90	71.654	Sus_scrofa
MGP_SPRETEiJ_G0019711	Ptcd2	91	50.145	ENSTGUG00000005705	PTCD2	99	50.145	Taeniopygia_guttata
MGP_SPRETEiJ_G0019711	Ptcd2	100	69.191	ENSTBEG00000016559	PTCD2	99	69.191	Tupaia_belangeri
MGP_SPRETEiJ_G0019711	Ptcd2	100	71.615	ENSTTRG00000011851	PTCD2	99	71.615	Tursiops_truncatus
MGP_SPRETEiJ_G0019711	Ptcd2	97	71.698	ENSUAMG00000007583	PTCD2	87	71.698	Ursus_americanus
MGP_SPRETEiJ_G0019711	Ptcd2	97	71.429	ENSUMAG00000007666	PTCD2	97	71.429	Ursus_maritimus
MGP_SPRETEiJ_G0019711	Ptcd2	100	70.573	ENSVPAG00000009597	PTCD2	99	70.573	Vicugna_pacos
MGP_SPRETEiJ_G0019711	Ptcd2	100	71.018	ENSVVUG00000007299	-	100	71.018	Vulpes_vulpes
MGP_SPRETEiJ_G0019711	Ptcd2	94	55.989	ENSXETG00000031652	PTCD2	94	55.989	Xenopus_tropicalis
MGP_SPRETEiJ_G0019711	Ptcd2	91	44.253	ENSXMAG00000005940	ptcd2	82	44.253	Xiphophorus_maculatus