EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
Description
Ensembl ID
MGP_SPRETEiJ_G0019718 (Gene tree)
Gene ID
-
Gene Symbol
Smn1
Alias
SMN
Full Name
survival motor neuron 1
Gene Type
protein_coding
Species
Mus_spretus
Status
putative
Strand
Plus strand
Length
12544 bases
Position
chr13:96767114-96779657
Accession
109257
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
MGP_SPRETEiJ_P0036952SMNPF06003.124.8e-10711
MGP_SPRETEiJ_P0036956SMNPF06003.124.2e-4311
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
MGP_SPRETEiJ_T0036960-417--- (aa)--
MGP_SPRETEiJ_T0036958-547--- (aa)--
MGP_SPRETEiJ_T0036959-636--- (aa)--
MGP_SPRETEiJ_T0036956-485-MGP_SPRETEiJ_P0036956161 (aa)--
MGP_SPRETEiJ_T0036957-591--- (aa)--
MGP_SPRETEiJ_T0036954-421-MGP_SPRETEiJ_P003695446 (aa)-UPI0001889D01
MGP_SPRETEiJ_T0036955-223-MGP_SPRETEiJ_P003695539 (aa)--
MGP_SPRETEiJ_T0036952-1219-MGP_SPRETEiJ_P0036952288 (aa)--
MGP_SPRETEiJ_T0036953-442--- (aa)--
Gene Model
Click here to download MGP_SPRETEiJ_G0019718's gene model file
Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0019718's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
MGP_SPRETEiJ_G0019718Smn19682.437ENSG00000205571SMN29981.655Homo_sapiens
MGP_SPRETEiJ_G0019718Smn19682.437ENSG00000172062SMN19981.655Homo_sapiens
MGP_SPRETEiJ_G0019718Smn19354.212ENSAPOG00000011324smn19453.261Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0019718Smn19783.274ENSAMEG00000003316-9682.131Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0019718Smn15852.128ENSACIG00000007598smn18958.442Amphilophus_citrinellus
MGP_SPRETEiJ_G0019718Smn18951.163ENSACIG00000019772-9750.752Amphilophus_citrinellus
MGP_SPRETEiJ_G0019718Smn19353.137ENSAOCG00000024444smn19453.623Amphiprion_ocellaris
MGP_SPRETEiJ_G0019718Smn19353.506ENSAPEG00000016504smn19453.986Amphiprion_percula
MGP_SPRETEiJ_G0019718Smn19052.788ENSATEG00000002182smn17952.788Anabas_testudineus
MGP_SPRETEiJ_G0019718Smn18748.611ENSAPLG00000010912-9752.239Anas_platyrhynchos
MGP_SPRETEiJ_G0019718Smn19954.054ENSACAG00000010017-9954.054Anolis_carolinensis
MGP_SPRETEiJ_G0019718Smn19978.912ENSANAG00000032133-9977.891Aotus_nancymaae
MGP_SPRETEiJ_G0019718Smn19349.281ENSACLG00000007308smn18852.985Astatotilapia_calliptera
MGP_SPRETEiJ_G0019718Smn19348.881ENSAMXG00000013884smn19549.817Astyanax_mexicanus
MGP_SPRETEiJ_G0019718Smn19779.359ENSBTAG00000005743SMN210077.241Bos_taurus
MGP_SPRETEiJ_G0019718Smn19680.357ENSCJAG00000016290-9978.231Callithrix_jacchus
MGP_SPRETEiJ_G0019718Smn110083.162ENSCAFG00000007812SMN10082.818Canis_familiaris
MGP_SPRETEiJ_G0019718Smn19983.391ENSCAFG00020019229-9383.045Canis_lupus_dingo
MGP_SPRETEiJ_G0019718Smn19779.787ENSCHIG00000015559-10077.778Capra_hircus
MGP_SPRETEiJ_G0019718Smn19983.045ENSTSYG00000012058-9982.699Carlito_syrichta
MGP_SPRETEiJ_G0019718Smn17664.474ENSCAPG00000011021-10064.912Cavia_aperea
MGP_SPRETEiJ_G0019718Smn19976.531ENSCPOG00000012328-9975.510Cavia_porcellus
MGP_SPRETEiJ_G0019718Smn110076.610ENSCPOG00000036973-10075.254Cavia_porcellus
MGP_SPRETEiJ_G0019718Smn19680.287ENSCCAG00000018127-9979.110Cebus_capucinus
MGP_SPRETEiJ_G0019718Smn19682.079ENSCATG00000037002-9981.295Cercocebus_atys
MGP_SPRETEiJ_G0019718Smn110075.251ENSCLAG00000000284-10074.916Chinchilla_lanigera
MGP_SPRETEiJ_G0019718Smn19683.571ENSCSAG00000015688-9982.253Chlorocebus_sabaeus
MGP_SPRETEiJ_G0019718Smn18671.429ENSCHOG00000007346-10071.429Choloepus_hoffmanni
MGP_SPRETEiJ_G0019718Smn19758.451ENSCPBG00000010968-9657.034Chrysemys_picta_bellii
MGP_SPRETEiJ_G0019718Smn17730.282ENSCSAVG00000008390-6230.909Ciona_savignyi
MGP_SPRETEiJ_G0019718Smn19576.429ENSCANG00000033324-9576.429Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0019718Smn19683.214ENSCANG00000038242-9983.516Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0019718Smn110072.917ENSCGRG00001016998-10072.917Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0019718Smn110094.444ENSCGRG00001017959-10094.097Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0019718Smn110094.444ENSCGRG00000007698Smn110094.097Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0019718Smn19351.211ENSCSEG00000015227smn19749.291Cynoglossus_semilaevis
MGP_SPRETEiJ_G0019718Smn19253.069ENSCVAG00000007498smn19452.837Cyprinodon_variegatus
MGP_SPRETEiJ_G0019718Smn19451.282ENSDARG00000018494smn19552.399Danio_rerio
MGP_SPRETEiJ_G0019718Smn18779.021ENSDNOG00000007283-10078.601Dasypus_novemcinctus
MGP_SPRETEiJ_G0019718Smn18664.748ENSDNOG00000045949-9068.095Dasypus_novemcinctus
MGP_SPRETEiJ_G0019718Smn110076.531ENSDORG00000007082Smn19976.190Dipodomys_ordii
MGP_SPRETEiJ_G0019718Smn17273.729ENSETEG00000001406-9367.539Echinops_telfairi
MGP_SPRETEiJ_G0019718Smn19336.824ENSEBUG00000011902smn19238.516Eptatretus_burgeri
MGP_SPRETEiJ_G0019718Smn19473.723ENSEASG00005018000-9773.723Equus_asinus_asinus
MGP_SPRETEiJ_G0019718Smn110081.443ENSECAG00000015215-10081.443Equus_caballus
MGP_SPRETEiJ_G0019718Smn18677.381ENSEEUG00000015777-10076.984Erinaceus_europaeus
MGP_SPRETEiJ_G0019718Smn19254.804ENSELUG00000018067smn19451.971Esox_lucius
MGP_SPRETEiJ_G0019718Smn110080.756ENSFCAG00000028292SMN10080.412Felis_catus
MGP_SPRETEiJ_G0019718Smn19060.076ENSFALG00000012320-9159.160Ficedula_albicollis
MGP_SPRETEiJ_G0019718Smn110076.254ENSFDAG00000017683-10075.585Fukomys_damarensis
MGP_SPRETEiJ_G0019718Smn16153.933ENSFHEG00000018508smn19650.545Fundulus_heteroclitus
MGP_SPRETEiJ_G0019718Smn19647.038ENSGMOG00000017279smn19648.387Gadus_morhua
MGP_SPRETEiJ_G0019718Smn19358.519ENSGALG00000002430SMN9556.667Gallus_gallus
MGP_SPRETEiJ_G0019718Smn19351.852ENSGAFG00000009501smn19452.190Gambusia_affinis
MGP_SPRETEiJ_G0019718Smn19352.330ENSGACG00000010584smn19151.264Gasterosteus_aculeatus
MGP_SPRETEiJ_G0019718Smn19337.209ENSGAGG00000013639-5454.386Gopherus_agassizii
MGP_SPRETEiJ_G0019718Smn19758.803ENSGAGG00000011374-9658.099Gopherus_agassizii
MGP_SPRETEiJ_G0019718Smn16281.215ENSGGOG00000026704-9179.381Gorilla_gorilla
MGP_SPRETEiJ_G0019718Smn19470.909ENSGGOG00000003872-10070.863Gorilla_gorilla
MGP_SPRETEiJ_G0019718Smn19250.562ENSHBUG00000013987smn19453.383Haplochromis_burtoni
MGP_SPRETEiJ_G0019718Smn110074.490ENSHGLG00000001905-10074.150Heterocephalus_glaber_female
MGP_SPRETEiJ_G0019718Smn19978.007ENSHGLG00000001018-9877.320Heterocephalus_glaber_female
MGP_SPRETEiJ_G0019718Smn19674.823ENSHGLG00100018676-10074.468Heterocephalus_glaber_male
MGP_SPRETEiJ_G0019718Smn19978.007ENSHGLG00100011252-9877.320Heterocephalus_glaber_male
MGP_SPRETEiJ_G0019718Smn19049.814ENSHCOG00000017136smn18749.612Hippocampus_comes
MGP_SPRETEiJ_G0019718Smn19451.625ENSIPUG00000012580smn18649.643Ictalurus_punctatus
MGP_SPRETEiJ_G0019718Smn19185.985ENSSTOG00000012288-10084.116Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0019718Smn16664.662ENSJJAG00000014853-8964.925Jaculus_jaculus
MGP_SPRETEiJ_G0019718Smn19452.518ENSKMAG00000007239smn19751.301Kryptolebias_marmoratus
MGP_SPRETEiJ_G0019718Smn19352.768ENSLBEG00000022550smn19453.409Labrus_bergylta
MGP_SPRETEiJ_G0019718Smn19336.594ENSLACG00000009808-9535.836Latimeria_chalumnae
MGP_SPRETEiJ_G0019718Smn19253.903ENSLOCG00000011339smn19452.788Lepisosteus_oculatus
MGP_SPRETEiJ_G0019718Smn110078.983ENSLAFG00000003425-9678.644Loxodonta_africana
MGP_SPRETEiJ_G0019718Smn19677.778ENSMFAG00000008812-9976.712Macaca_fascicularis
MGP_SPRETEiJ_G0019718Smn19684.286ENSMFAG00000031523SMN19983.516Macaca_fascicularis
MGP_SPRETEiJ_G0019718Smn19677.778ENSMMUG00000030594-9976.712Macaca_mulatta
MGP_SPRETEiJ_G0019718Smn19684.286ENSMMUG00000020214SMN19983.516Macaca_mulatta
MGP_SPRETEiJ_G0019718Smn19683.929ENSMNEG00000035094-9983.516Macaca_nemestrina
MGP_SPRETEiJ_G0019718Smn18667.376ENSMNEG00000036423-8668.326Macaca_nemestrina
MGP_SPRETEiJ_G0019718Smn19683.154ENSMLEG00000041902-9982.374Mandrillus_leucophaeus
MGP_SPRETEiJ_G0019718Smn19252.574ENSMAMG00000011034smn19451.625Mastacembelus_armatus
MGP_SPRETEiJ_G0019718Smn19249.275ENSMZEG00005013634smn19452.899Maylandia_zebra
MGP_SPRETEiJ_G0019718Smn18748.936ENSMGAG00000008889-9551.777Meleagris_gallopavo
MGP_SPRETEiJ_G0019718Smn110091.667ENSMAUG00000010262Smn110093.056Mesocricetus_auratus
MGP_SPRETEiJ_G0019718Smn19278.947ENSMICG00000034708-9984.091Microcebus_murinus
MGP_SPRETEiJ_G0019718Smn110091.319ENSMOCG00000017833Smn110090.972Microtus_ochrogaster
MGP_SPRETEiJ_G0019718Smn19247.744ENSMMOG00000005504smn19649.438Mola_mola
MGP_SPRETEiJ_G0019718Smn110063.823ENSMODG00000001436-9963.140Monodelphis_domestica
MGP_SPRETEiJ_G0019718Smn19251.838ENSMALG00000008025smn19451.625Monopterus_albus
MGP_SPRETEiJ_G0019718Smn110098.611MGP_CAROLIEiJ_G0018836Smn110098.611Mus_caroli
MGP_SPRETEiJ_G0019718Smn110099.379ENSMUSG00000021645Smn110099.379Mus_musculus
MGP_SPRETEiJ_G0019718Smn110092.708MGP_PahariEiJ_G0015911Smn110094.444Mus_pahari
MGP_SPRETEiJ_G0019718Smn19584.116ENSMPUG00000014470-9883.755Mustela_putorius_furo
MGP_SPRETEiJ_G0019718Smn19781.944ENSMLUG00000010603-9680.936Myotis_lucifugus
MGP_SPRETEiJ_G0019718Smn110084.828ENSNGAG00000019833Smn110084.483Nannospalax_galili
MGP_SPRETEiJ_G0019718Smn15362.338ENSNBRG00000023000smn19453.986Neolamprologus_brichardi
MGP_SPRETEiJ_G0019718Smn19980.822ENSNLEG00000004454-9981.319Nomascus_leucogenys
MGP_SPRETEiJ_G0019718Smn18757.639ENSMEUG00000011393-9959.649Notamacropus_eugenii
MGP_SPRETEiJ_G0019718Smn18676.285ENSOPRG00000002015-10077.075Ochotona_princeps
MGP_SPRETEiJ_G0019718Smn19577.899ENSODEG00000015976-9777.536Octodon_degus
MGP_SPRETEiJ_G0019718Smn15461.538ENSONIG00000011799smn19553.597Oreochromis_niloticus
MGP_SPRETEiJ_G0019718Smn19461.957ENSOANG00000001626-9662.319Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0019718Smn110078.425ENSOCUG00000017097-9978.425Oryctolagus_cuniculus
MGP_SPRETEiJ_G0019718Smn19973.898ENSOCUG00000026649-9976.610Oryctolagus_cuniculus
MGP_SPRETEiJ_G0019718Smn19972.355ENSOCUG00000025183-9971.672Oryctolagus_cuniculus
MGP_SPRETEiJ_G0019718Smn19353.333ENSORLG00000010552smn19453.333Oryzias_latipes
MGP_SPRETEiJ_G0019718Smn19352.045ENSORLG00020007936smn16457.831Oryzias_latipes_hni
MGP_SPRETEiJ_G0019718Smn19350.186ENSORLG00015022425smn19453.333Oryzias_latipes_hsok
MGP_SPRETEiJ_G0019718Smn19352.612ENSOMEG00000007824smn19454.074Oryzias_melastigma
MGP_SPRETEiJ_G0019718Smn19174.074ENSOGAG00000031414-10071.280Otolemur_garnettii
MGP_SPRETEiJ_G0019718Smn19577.899ENSOARG00000005425-10076.449Ovis_aries
MGP_SPRETEiJ_G0019718Smn19682.796ENSPPAG00000036640-9982.014Pan_paniscus
MGP_SPRETEiJ_G0019718Smn110081.100ENSPPRG00000005575-10080.756Panthera_pardus
MGP_SPRETEiJ_G0019718Smn110081.100ENSPTIG00000007745-10081.100Panthera_tigris_altaica
MGP_SPRETEiJ_G0019718Smn19681.560ENSPTRG00000016955-9981.319Pan_troglodytes
MGP_SPRETEiJ_G0019718Smn19578.261ENSPANG00000000253-9877.163Papio_anubis
MGP_SPRETEiJ_G0019718Smn19982.935ENSPANG00000013601-9983.516Papio_anubis
MGP_SPRETEiJ_G0019718Smn19249.091ENSPKIG00000011096smn19449.624Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0019718Smn19256.115ENSPSIG00000014787-8754.348Pelodiscus_sinensis
MGP_SPRETEiJ_G0019718Smn19445.205ENSPMGG00000012285smn19449.042Periophthalmus_magnuspinnatus
MGP_SPRETEiJ_G0019718Smn19740.351ENSPMAG00000005004smn19641.259Petromyzon_marinus
MGP_SPRETEiJ_G0019718Smn19865.505ENSPCIG00000025764-9964.808Phascolarctos_cinereus
MGP_SPRETEiJ_G0019718Smn19352.963ENSPFOG00000007786smn19453.333Poecilia_formosa
MGP_SPRETEiJ_G0019718Smn19353.333ENSPLAG00000012071smn19453.704Poecilia_latipinna
MGP_SPRETEiJ_G0019718Smn19352.963ENSPMEG00000017085smn19453.333Poecilia_mexicana
MGP_SPRETEiJ_G0019718Smn19352.963ENSPREG00000005824smn19453.285Poecilia_reticulata
MGP_SPRETEiJ_G0019718Smn18653.600ENSPPYG00000019189-9953.200Pongo_abelii
MGP_SPRETEiJ_G0019718Smn19280.899ENSPPYG00000015533-9780.899Pongo_abelii
MGP_SPRETEiJ_G0019718Smn19277.574ENSPCAG00000004187-10076.838Procavia_capensis
MGP_SPRETEiJ_G0019718Smn18773.973ENSPCOG00000022307-10062.977Propithecus_coquereli
MGP_SPRETEiJ_G0019718Smn19783.986ENSPVAG00000005977-10081.973Pteropus_vampyrus
MGP_SPRETEiJ_G0019718Smn15362.338ENSPNYG00000014148smn19453.986Pundamilia_nyererei
MGP_SPRETEiJ_G0019718Smn19451.264ENSPNAG00000014007smn18449.648Pygocentrus_nattereri
MGP_SPRETEiJ_G0019718Smn110094.118ENSRNOG00000018067Smn110093.772Rattus_norvegicus
MGP_SPRETEiJ_G0019718Smn19568.571ENSRBIG00000036775-9269.597Rhinopithecus_bieti
MGP_SPRETEiJ_G0019718Smn19683.571ENSRBIG00000037052-9983.516Rhinopithecus_bieti
MGP_SPRETEiJ_G0019718Smn19683.571ENSRROG00000039399-9983.516Rhinopithecus_roxellana
MGP_SPRETEiJ_G0019718Smn19967.918ENSRROG00000031088-9768.881Rhinopithecus_roxellana
MGP_SPRETEiJ_G0019718Smn19678.495ENSSBOG00000011665-9977.397Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0019718Smn18475.200ENSSBOG00000020112-8774.502Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0019718Smn110064.846ENSSHAG00000001499-10062.816Sarcophilus_harrisii
MGP_SPRETEiJ_G0019718Smn19352.000ENSSFOG00015015507smn19451.636Scleropages_formosus
MGP_SPRETEiJ_G0019718Smn19349.110ENSSMAG00000007922smn19451.264Scophthalmus_maximus
MGP_SPRETEiJ_G0019718Smn19351.292ENSSDUG00000018533smn19451.625Seriola_dumerili
MGP_SPRETEiJ_G0019718Smn19351.661ENSSLDG00000021135smn19451.986Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0019718Smn19660.714ENSSPUG00000000373-9559.928Sphenodon_punctatus
MGP_SPRETEiJ_G0019718Smn19352.222ENSSPAG00000004345smn19452.174Stegastes_partitus
MGP_SPRETEiJ_G0019718Smn19780.783ENSSSCG00000016970-10080.952Sus_scrofa
MGP_SPRETEiJ_G0019718Smn19760.000ENSSSCG00000029127-9761.458Sus_scrofa
MGP_SPRETEiJ_G0019718Smn17756.000ENSSSCG00000033865-9555.869Sus_scrofa
MGP_SPRETEiJ_G0019718Smn19457.554ENSTGUG00000001548-10057.554Taeniopygia_guttata
MGP_SPRETEiJ_G0019718Smn15553.939ENSTRUG00000000736smn9548.175Takifugu_rubripes
MGP_SPRETEiJ_G0019718Smn19349.270ENSTNIG00000009892smn19548.944Tetraodon_nigroviridis
MGP_SPRETEiJ_G0019718Smn16681.771ENSTBEG00000002399-9381.771Tupaia_belangeri
MGP_SPRETEiJ_G0019718Smn19779.004ENSTTRG00000005080-10077.703Tursiops_truncatus
MGP_SPRETEiJ_G0019718Smn16283.516ENSUAMG00000024947-7082.292Ursus_americanus
MGP_SPRETEiJ_G0019718Smn19783.986ENSUMAG00000007842-7482.818Ursus_maritimus
MGP_SPRETEiJ_G0019718Smn19172.830ENSVPAG00000009887-10070.968Vicugna_pacos
MGP_SPRETEiJ_G0019718Smn110083.162ENSVVUG00000006934-10082.818Vulpes_vulpes
MGP_SPRETEiJ_G0019718Smn19652.482ENSXETG00000018189smn29653.310Xenopus_tropicalis
MGP_SPRETEiJ_G0019718Smn19138.710ENSXETG00000004912-7962.903Xenopus_tropicalis
MGP_SPRETEiJ_G0019718Smn19351.273ENSXMAG00000001521smn19551.254Xiphophorus_maculatus

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us