EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0020101 (Gene tree)
Gene ID: -
Gene Symbol: Apex1
Alias: HAP1|Ref-1
Full Name: apurinic/apyrimidinic endonuclease 1
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Plus strand
Length: 2194 bases
Position: chr14:40829664-40831857
Accession: 88042
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0038198	Exo_endo_phos	PF03372.23	1.1e-21	1	1
MGP_SPRETEiJ_P0038201	Exo_endo_phos	PF03372.23	2.4e-20	1	1
MGP_SPRETEiJ_P0038199	Exo_endo_phos	PF03372.23	1.6e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0038198	-	1229	-	MGP_SPRETEiJ_P0038198	317 (aa)	-	UPI0000003F08
MGP_SPRETEiJ_T0038199	-	655	-	MGP_SPRETEiJ_P0038199	177 (aa)	-	UPI000198D0F0
MGP_SPRETEiJ_T0038200	-	438	-	MGP_SPRETEiJ_P0038200	49 (aa)	-	UPI000198D0F1
MGP_SPRETEiJ_T0038201	-	1026	-	MGP_SPRETEiJ_P0038201	289 (aa)	-	UPI000198D0EF

Gene Model

Click here to download MGP_SPRETEiJ_G0020101's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0020101's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0020101	Apex1	100	94.340	ENSG00000100823	APEX1	99	97.987	Homo_sapiens
MGP_SPRETEiJ_G0020101	Apex1	88	69.892	ENSAPOG00000017002	apex1	99	65.397	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0020101	Apex1	100	95.597	ENSAMEG00000005418	APEX1	100	95.597	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0020101	Apex1	88	71.223	ENSACIG00000010653	apex1	97	70.588	Amphilophus_citrinellus
MGP_SPRETEiJ_G0020101	Apex1	88	69.534	ENSAOCG00000009649	apex1	99	65.300	Amphiprion_ocellaris
MGP_SPRETEiJ_G0020101	Apex1	88	69.534	ENSAPEG00000021453	apex1	99	65.300	Amphiprion_percula
MGP_SPRETEiJ_G0020101	Apex1	99	67.516	ENSATEG00000002883	apex1	97	67.516	Anabas_testudineus
MGP_SPRETEiJ_G0020101	Apex1	100	70.093	ENSACAG00000008099	APEX1	100	70.093	Anolis_carolinensis
MGP_SPRETEiJ_G0020101	Apex1	100	95.597	ENSANAG00000030117	APEX1	100	95.597	Aotus_nancymaae
MGP_SPRETEiJ_G0020101	Apex1	87	71.739	ENSACLG00000018441	apex1	99	67.302	Astatotilapia_calliptera
MGP_SPRETEiJ_G0020101	Apex1	100	66.562	ENSAMXG00000034699	apex1	100	66.562	Astyanax_mexicanus
MGP_SPRETEiJ_G0020101	Apex1	100	93.396	ENSBTAG00000002745	APEX1	100	93.396	Bos_taurus
MGP_SPRETEiJ_G0020101	Apex1	80	44.922	WBGene00001372	exo-3	88	44.922	Caenorhabditis_elegans
MGP_SPRETEiJ_G0020101	Apex1	100	95.597	ENSCJAG00000009726	APEX1	100	95.597	Callithrix_jacchus
MGP_SPRETEiJ_G0020101	Apex1	100	95.597	ENSCAFG00000032033	APEX1	100	95.597	Canis_familiaris
MGP_SPRETEiJ_G0020101	Apex1	97	92.442	ENSCAFG00020023002	-	96	92.442	Canis_lupus_dingo
MGP_SPRETEiJ_G0020101	Apex1	100	95.597	ENSCAFG00020014377	-	100	95.597	Canis_lupus_dingo
MGP_SPRETEiJ_G0020101	Apex1	100	93.082	ENSCHIG00000007298	-	100	93.082	Capra_hircus
MGP_SPRETEiJ_G0020101	Apex1	97	77.907	ENSCHIG00000014537	-	99	74.038	Capra_hircus
MGP_SPRETEiJ_G0020101	Apex1	100	94.025	ENSTSYG00000034813	APEX1	100	94.025	Carlito_syrichta
MGP_SPRETEiJ_G0020101	Apex1	85	88.561	ENSCAPG00000016235	APEX1	91	97.034	Cavia_aperea
MGP_SPRETEiJ_G0020101	Apex1	100	93.711	ENSCPOG00000030909	APEX1	100	93.711	Cavia_porcellus
MGP_SPRETEiJ_G0020101	Apex1	100	81.761	ENSCCAG00000031931	-	100	81.761	Cebus_capucinus
MGP_SPRETEiJ_G0020101	Apex1	100	95.597	ENSCCAG00000033056	-	100	95.597	Cebus_capucinus
MGP_SPRETEiJ_G0020101	Apex1	100	94.340	ENSCATG00000015580	APEX1	100	94.340	Cercocebus_atys
MGP_SPRETEiJ_G0020101	Apex1	100	94.340	ENSCLAG00000001002	APEX1	100	94.340	Chinchilla_lanigera
MGP_SPRETEiJ_G0020101	Apex1	100	94.025	ENSCSAG00000016685	-	100	94.025	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0020101	Apex1	100	94.025	ENSCSAG00000016670	-	100	94.025	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0020101	Apex1	100	71.473	ENSCPBG00000009567	APEX1	100	71.473	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0020101	Apex1	91	54.237	ENSCING00000008137	-	94	54.237	Ciona_intestinalis
MGP_SPRETEiJ_G0020101	Apex1	100	47.634	ENSCSAVG00000007144	-	100	52.896	Ciona_savignyi
MGP_SPRETEiJ_G0020101	Apex1	100	94.654	ENSCANG00000030726	APEX1	100	94.654	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0020101	Apex1	100	94.322	ENSCGRG00001017046	Apex1	100	94.322	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0020101	Apex1	100	94.322	ENSCGRG00000008984	Apex1	100	94.322	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0020101	Apex1	99	64.984	ENSCSEG00000017499	apex1	99	64.984	Cynoglossus_semilaevis
MGP_SPRETEiJ_G0020101	Apex1	99	66.984	ENSCVAG00000022075	apex1	99	66.984	Cyprinodon_variegatus
MGP_SPRETEiJ_G0020101	Apex1	100	65.931	ENSDARG00000045843	apex1	100	65.931	Danio_rerio
MGP_SPRETEiJ_G0020101	Apex1	100	90.449	ENSDNOG00000042234	APEX1	95	90.252	Dasypus_novemcinctus
MGP_SPRETEiJ_G0020101	Apex1	100	93.711	ENSDORG00000001616	Apex1	100	93.711	Dipodomys_ordii
MGP_SPRETEiJ_G0020101	Apex1	100	93.396	ENSETEG00000004855	-	100	93.396	Echinops_telfairi
MGP_SPRETEiJ_G0020101	Apex1	75	64.017	ENSEBUG00000000622	-	92	64.017	Eptatretus_burgeri
MGP_SPRETEiJ_G0020101	Apex1	100	95.597	ENSEASG00005017489	APEX1	74	95.597	Equus_asinus_asinus
MGP_SPRETEiJ_G0020101	Apex1	100	95.597	ENSECAG00000022325	APEX1	82	95.597	Equus_caballus
MGP_SPRETEiJ_G0020101	Apex1	91	93.750	ENSEEUG00000012569	APEX1	100	93.750	Erinaceus_europaeus
MGP_SPRETEiJ_G0020101	Apex1	100	65.300	ENSELUG00000021706	apex1	100	65.931	Esox_lucius
MGP_SPRETEiJ_G0020101	Apex1	100	96.226	ENSFCAG00000030869	APEX1	100	96.226	Felis_catus
MGP_SPRETEiJ_G0020101	Apex1	100	94.025	ENSFDAG00000006120	APEX1	100	94.025	Fukomys_damarensis
MGP_SPRETEiJ_G0020101	Apex1	99	68.889	ENSFHEG00000009031	apex1	83	68.889	Fundulus_heteroclitus
MGP_SPRETEiJ_G0020101	Apex1	99	62.222	ENSGMOG00000007943	apex1	99	62.222	Gadus_morhua
MGP_SPRETEiJ_G0020101	Apex1	99	67.937	ENSGAFG00000005311	apex1	99	67.937	Gambusia_affinis
MGP_SPRETEiJ_G0020101	Apex1	99	66.246	ENSGACG00000019497	apex1	99	69.549	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0020101	Apex1	100	70.846	ENSGAGG00000014999	APEX1	100	70.846	Gopherus_agassizii
MGP_SPRETEiJ_G0020101	Apex1	100	94.654	ENSGGOG00000002128	APEX1	100	94.654	Gorilla_gorilla
MGP_SPRETEiJ_G0020101	Apex1	99	66.667	ENSHBUG00000005894	apex1	99	67.405	Haplochromis_burtoni
MGP_SPRETEiJ_G0020101	Apex1	100	94.340	ENSHGLG00000002848	APEX1	100	94.340	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0020101	Apex1	100	94.340	ENSHGLG00100017878	APEX1	100	94.340	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0020101	Apex1	99	66.456	ENSHCOG00000009961	apex1	99	66.456	Hippocampus_comes
MGP_SPRETEiJ_G0020101	Apex1	100	68.025	ENSIPUG00000005799	apex1	100	68.025	Ictalurus_punctatus
MGP_SPRETEiJ_G0020101	Apex1	100	94.340	ENSSTOG00000010096	APEX1	100	94.340	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0020101	Apex1	95	86.572	ENSJJAG00000020465	-	96	86.572	Jaculus_jaculus
MGP_SPRETEiJ_G0020101	Apex1	100	93.396	ENSJJAG00000012067	-	100	93.396	Jaculus_jaculus
MGP_SPRETEiJ_G0020101	Apex1	100	83.962	ENSJJAG00000003660	-	100	83.962	Jaculus_jaculus
MGP_SPRETEiJ_G0020101	Apex1	99	66.984	ENSKMAG00000021171	apex1	99	66.984	Kryptolebias_marmoratus
MGP_SPRETEiJ_G0020101	Apex1	99	64.444	ENSLBEG00000010248	apex1	99	64.444	Labrus_bergylta
MGP_SPRETEiJ_G0020101	Apex1	100	66.562	ENSLACG00000008617	APEX1	100	66.562	Latimeria_chalumnae
MGP_SPRETEiJ_G0020101	Apex1	100	66.770	ENSLOCG00000015516	apex1	99	66.770	Lepisosteus_oculatus
MGP_SPRETEiJ_G0020101	Apex1	100	92.453	ENSLAFG00000021872	APEX1	100	92.453	Loxodonta_africana
MGP_SPRETEiJ_G0020101	Apex1	100	94.025	ENSMFAG00000002565	APEX1	100	94.025	Macaca_fascicularis
MGP_SPRETEiJ_G0020101	Apex1	100	94.025	ENSMMUG00000048039	APEX1	100	94.025	Macaca_mulatta
MGP_SPRETEiJ_G0020101	Apex1	100	94.025	ENSMNEG00000036944	APEX1	100	94.025	Macaca_nemestrina
MGP_SPRETEiJ_G0020101	Apex1	100	94.340	ENSMLEG00000042125	APEX1	100	94.340	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0020101	Apex1	99	67.302	ENSMAMG00000023526	apex1	99	67.302	Mastacembelus_armatus
MGP_SPRETEiJ_G0020101	Apex1	87	71.739	ENSMZEG00005014187	apex1	99	67.302	Maylandia_zebra
MGP_SPRETEiJ_G0020101	Apex1	100	94.637	ENSMAUG00000013994	Apex1	100	94.637	Mesocricetus_auratus
MGP_SPRETEiJ_G0020101	Apex1	100	95.283	ENSMICG00000043554	APEX1	100	95.283	Microcebus_murinus
MGP_SPRETEiJ_G0020101	Apex1	100	95.584	ENSMOCG00000013721	Apex1	100	95.584	Microtus_ochrogaster
MGP_SPRETEiJ_G0020101	Apex1	99	63.950	ENSMMOG00000010031	apex1	97	63.950	Mola_mola
MGP_SPRETEiJ_G0020101	Apex1	100	84.375	ENSMODG00000007125	APEX1	100	85.714	Monodelphis_domestica
MGP_SPRETEiJ_G0020101	Apex1	88	64.158	ENSMALG00000011699	apex1	79	63.140	Monopterus_albus
MGP_SPRETEiJ_G0020101	Apex1	100	99.435	MGP_CAROLIEiJ_G0019209	Apex1	100	99.435	Mus_caroli
MGP_SPRETEiJ_G0020101	Apex1	100	100.000	ENSMUSG00000035960	Apex1	100	100.000	Mus_musculus
MGP_SPRETEiJ_G0020101	Apex1	100	99.054	MGP_PahariEiJ_G0030232	Apex1	100	99.054	Mus_pahari
MGP_SPRETEiJ_G0020101	Apex1	100	94.688	ENSMLUG00000028957	APEX1	100	94.688	Myotis_lucifugus
MGP_SPRETEiJ_G0020101	Apex1	100	94.969	ENSNGAG00000002725	-	100	94.969	Nannospalax_galili
MGP_SPRETEiJ_G0020101	Apex1	100	72.852	ENSNGAG00000021748	-	99	71.384	Nannospalax_galili
MGP_SPRETEiJ_G0020101	Apex1	87	71.377	ENSNBRG00000005334	apex1	91	66.984	Neolamprologus_brichardi
MGP_SPRETEiJ_G0020101	Apex1	100	94.969	ENSNLEG00000010839	APEX1	100	94.969	Nomascus_leucogenys
MGP_SPRETEiJ_G0020101	Apex1	100	85.804	ENSMEUG00000014519	APEX1	100	85.804	Notamacropus_eugenii
MGP_SPRETEiJ_G0020101	Apex1	100	93.082	ENSOPRG00000014029	APEX1	100	93.082	Ochotona_princeps
MGP_SPRETEiJ_G0020101	Apex1	100	94.654	ENSODEG00000001703	-	100	94.654	Octodon_degus
MGP_SPRETEiJ_G0020101	Apex1	100	75.843	ENSODEG00000004777	-	99	76.052	Octodon_degus
MGP_SPRETEiJ_G0020101	Apex1	100	70.988	ENSODEG00000006583	-	100	70.988	Octodon_degus
MGP_SPRETEiJ_G0020101	Apex1	88	71.942	ENSONIG00000012089	apex1	99	67.619	Oreochromis_niloticus
MGP_SPRETEiJ_G0020101	Apex1	90	83.158	ENSOANG00000008836	APEX1	80	79.012	Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0020101	Apex1	100	95.283	ENSOCUG00000005022	APEX1	100	95.283	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0020101	Apex1	99	67.610	ENSORLG00000012378	apex1	99	67.610	Oryzias_latipes
MGP_SPRETEiJ_G0020101	Apex1	99	67.610	ENSORLG00020021371	apex1	99	67.610	Oryzias_latipes_hni
MGP_SPRETEiJ_G0020101	Apex1	99	67.610	ENSORLG00015020089	apex1	99	67.610	Oryzias_latipes_hsok
MGP_SPRETEiJ_G0020101	Apex1	99	67.302	ENSOMEG00000018876	apex1	99	67.302	Oryzias_melastigma
MGP_SPRETEiJ_G0020101	Apex1	100	94.025	ENSOGAG00000013335	-	100	94.025	Otolemur_garnettii
MGP_SPRETEiJ_G0020101	Apex1	100	89.347	ENSOGAG00000029355	-	100	89.347	Otolemur_garnettii
MGP_SPRETEiJ_G0020101	Apex1	97	89.610	ENSOARG00000001876	-	100	89.610	Ovis_aries
MGP_SPRETEiJ_G0020101	Apex1	98	82.759	ENSOARG00000014424	-	99	78.662	Ovis_aries
MGP_SPRETEiJ_G0020101	Apex1	100	92.138	ENSOARG00000019740	-	100	92.138	Ovis_aries
MGP_SPRETEiJ_G0020101	Apex1	100	94.654	ENSPPAG00000038760	APEX1	100	94.654	Pan_paniscus
MGP_SPRETEiJ_G0020101	Apex1	100	96.541	ENSPPRG00000011794	APEX1	100	96.541	Panthera_pardus
MGP_SPRETEiJ_G0020101	Apex1	100	96.226	ENSPTIG00000014829	APEX1	100	96.226	Panthera_tigris_altaica
MGP_SPRETEiJ_G0020101	Apex1	100	94.654	ENSPTRG00000006093	APEX1	100	94.654	Pan_troglodytes
MGP_SPRETEiJ_G0020101	Apex1	100	94.340	ENSPANG00000022757	APEX1	100	94.340	Papio_anubis
MGP_SPRETEiJ_G0020101	Apex1	87	68.592	ENSPKIG00000003504	apex1	100	64.815	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0020101	Apex1	76	67.078	ENSPMGG00000016596	apex1	73	67.078	Periophthalmus_magnuspinnatus
MGP_SPRETEiJ_G0020101	Apex1	100	97.476	ENSPEMG00000019097	Apex1	100	97.476	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0020101	Apex1	95	65.232	ENSPMAG00000007275	-	100	65.232	Petromyzon_marinus
MGP_SPRETEiJ_G0020101	Apex1	100	84.013	ENSPCIG00000023274	APEX1	100	85.981	Phascolarctos_cinereus
MGP_SPRETEiJ_G0020101	Apex1	99	67.937	ENSPFOG00000004178	apex1	99	67.937	Poecilia_formosa
MGP_SPRETEiJ_G0020101	Apex1	99	67.619	ENSPLAG00000012779	apex1	99	67.619	Poecilia_latipinna
MGP_SPRETEiJ_G0020101	Apex1	99	67.937	ENSPMEG00000019623	apex1	99	67.937	Poecilia_mexicana
MGP_SPRETEiJ_G0020101	Apex1	99	67.302	ENSPREG00000014298	apex1	99	67.302	Poecilia_reticulata
MGP_SPRETEiJ_G0020101	Apex1	100	94.025	ENSPPYG00000005565	APEX1	100	94.025	Pongo_abelii
MGP_SPRETEiJ_G0020101	Apex1	100	91.195	ENSPCAG00000010376	APEX1	100	91.195	Procavia_capensis
MGP_SPRETEiJ_G0020101	Apex1	100	95.283	ENSPCOG00000021564	APEX1	100	95.283	Propithecus_coquereli
MGP_SPRETEiJ_G0020101	Apex1	100	94.062	ENSPVAG00000010736	APEX1	100	94.062	Pteropus_vampyrus
MGP_SPRETEiJ_G0020101	Apex1	87	71.739	ENSPNYG00000023940	apex1	99	67.302	Pundamilia_nyererei
MGP_SPRETEiJ_G0020101	Apex1	100	62.011	ENSPNAG00000020897	apex1	96	65.763	Pygocentrus_nattereri
MGP_SPRETEiJ_G0020101	Apex1	100	98.423	ENSRNOG00000009663	Apex1	100	98.423	Rattus_norvegicus
MGP_SPRETEiJ_G0020101	Apex1	100	94.340	ENSRBIG00000038325	APEX1	99	94.340	Rhinopithecus_bieti
MGP_SPRETEiJ_G0020101	Apex1	100	81.073	ENSSBOG00000031372	-	100	81.073	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0020101	Apex1	100	95.283	ENSSBOG00000018921	-	100	95.283	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0020101	Apex1	100	83.333	ENSSHAG00000013524	APEX1	100	84.049	Sarcophilus_harrisii
MGP_SPRETEiJ_G0020101	Apex1	100	63.407	ENSSFOG00015001948	apex1	100	63.407	Scleropages_formosus
MGP_SPRETEiJ_G0020101	Apex1	99	66.032	ENSSMAG00000013348	apex1	99	66.032	Scophthalmus_maximus
MGP_SPRETEiJ_G0020101	Apex1	99	66.667	ENSSDUG00000016377	apex1	99	66.667	Seriola_dumerili
MGP_SPRETEiJ_G0020101	Apex1	99	67.302	ENSSLDG00000023005	apex1	99	67.302	Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0020101	Apex1	99	68.354	ENSSPUG00000000531	APEX1	99	68.354	Sphenodon_punctatus
MGP_SPRETEiJ_G0020101	Apex1	99	65.714	ENSSPAG00000000458	apex1	99	65.714	Stegastes_partitus
MGP_SPRETEiJ_G0020101	Apex1	100	58.192	ENSSSCG00000039705	-	100	56.037	Sus_scrofa
MGP_SPRETEiJ_G0020101	Apex1	100	95.597	ENSSSCG00000040060	-	100	95.597	Sus_scrofa
MGP_SPRETEiJ_G0020101	Apex1	74	60.593	ENSTGUG00000014378	APEX1	100	60.593	Taeniopygia_guttata
MGP_SPRETEiJ_G0020101	Apex1	88	67.986	ENSTRUG00000004268	apex1	95	64.062	Takifugu_rubripes
MGP_SPRETEiJ_G0020101	Apex1	99	64.127	ENSTNIG00000005778	apex1	99	64.127	Tetraodon_nigroviridis
MGP_SPRETEiJ_G0020101	Apex1	100	90.881	ENSTBEG00000006405	APEX1	100	90.881	Tupaia_belangeri
MGP_SPRETEiJ_G0020101	Apex1	74	94.915	ENSTTRG00000007860	APEX1	100	94.915	Tursiops_truncatus
MGP_SPRETEiJ_G0020101	Apex1	100	95.283	ENSUAMG00000010457	APEX1	100	95.283	Ursus_americanus
MGP_SPRETEiJ_G0020101	Apex1	100	95.283	ENSUMAG00000009178	APEX1	100	95.283	Ursus_maritimus
MGP_SPRETEiJ_G0020101	Apex1	74	89.831	ENSVPAG00000005083	APEX1	100	89.831	Vicugna_pacos
MGP_SPRETEiJ_G0020101	Apex1	100	95.597	ENSVVUG00000009010	APEX1	100	95.597	Vulpes_vulpes
MGP_SPRETEiJ_G0020101	Apex1	100	66.250	ENSXETG00000024773	apex1	100	66.250	Xenopus_tropicalis
MGP_SPRETEiJ_G0020101	Apex1	99	68.571	ENSXCOG00000015233	apex1	99	68.571	Xiphophorus_couchianus
MGP_SPRETEiJ_G0020101	Apex1	99	68.571	ENSXMAG00000006195	apex1	99	68.571	Xiphophorus_maculatus