EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
MGP_SPRETEiJ_G0020232 (Gene tree)
Gene ID
-
Gene Symbol
Pspc1
Alias
5730470C09Rik|PSP1
Full Name
paraspeckle protein 1
Gene Type
protein_coding
Species
Mus_spretus
Status
putative
Strand
Minus strand
Length
62056 bases
Position
chr14:46804973-46867028
Accession
1913895
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
MGP_SPRETEiJ_P0038664RRM_1PF00076.223.5e-3212
MGP_SPRETEiJ_P0038664RRM_1PF00076.223.5e-3222
MGP_SPRETEiJ_P0038663RRM_1PF00076.225e-3212
MGP_SPRETEiJ_P0038663RRM_1PF00076.225e-3222
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
MGP_SPRETEiJ_T0038666-601-MGP_SPRETEiJ_P003866658 (aa)--
MGP_SPRETEiJ_T0038664-2864-MGP_SPRETEiJ_P0038664466 (aa)--
MGP_SPRETEiJ_T0038665-528--- (aa)--
MGP_SPRETEiJ_T0038663-2382-MGP_SPRETEiJ_P0038663523 (aa)--
Gene Model
Click here to download MGP_SPRETEiJ_G0020232's gene model file
Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0020232's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
MGP_SPRETEiJ_G0020232Pspc18471.429MGP_SPRETEiJ_G0027466Sfpq5565.891
MGP_SPRETEiJ_G0020232Pspc16941.304MGP_SPRETEiJ_G0016386Cirbp6834.247
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
MGP_SPRETEiJ_G0020232Pspc110097.328ENSG00000121390PSPC110097.328Homo_sapiens
MGP_SPRETEiJ_G0020232Pspc18875.121ENSAPOG00000015946pspc18172.477Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0020232Pspc110096.947ENSAMEG00000017420PSPC110096.947Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0020232Pspc19959.149ENSACIG00000018695pspc18759.110Amphilophus_citrinellus
MGP_SPRETEiJ_G0020232Pspc18874.638ENSAOCG00000005279pspc18172.018Amphiprion_ocellaris
MGP_SPRETEiJ_G0020232Pspc18874.638ENSAPEG00000015927pspc18172.018Amphiprion_percula
MGP_SPRETEiJ_G0020232Pspc18469.388ENSATEG00000004878pspc18657.325Anabas_testudineus
MGP_SPRETEiJ_G0020232Pspc18473.469ENSAPLG00000003643SFPQ6969.126Anas_platyrhynchos
MGP_SPRETEiJ_G0020232Pspc17793.564ENSAPLG00000006246PSPC110093.564Anas_platyrhynchos
MGP_SPRETEiJ_G0020232Pspc19886.422ENSACAG00000002093PSPC19984.952Anolis_carolinensis
MGP_SPRETEiJ_G0020232Pspc18471.429ENSACAG00000013307-5665.027Anolis_carolinensis
MGP_SPRETEiJ_G0020232Pspc110097.519ENSANAG00000000059PSPC110097.519Aotus_nancymaae
MGP_SPRETEiJ_G0020232Pspc19955.765ENSACLG00000027220pspc110053.945Astatotilapia_calliptera
MGP_SPRETEiJ_G0020232Pspc19968.565ENSAMXG00000036881pspc18768.354Astyanax_mexicanus
MGP_SPRETEiJ_G0020232Pspc110095.038ENSBTAG00000003934PSPC110094.466Bos_taurus
MGP_SPRETEiJ_G0020232Pspc110097.519ENSCJAG00000004554PSPC110097.519Callithrix_jacchus
MGP_SPRETEiJ_G0020232Pspc110097.137ENSCAFG00020002009PSPC110097.137Canis_lupus_dingo
MGP_SPRETEiJ_G0020232Pspc110095.038ENSCHIG00000016708PSPC110094.466Capra_hircus
MGP_SPRETEiJ_G0020232Pspc18087.707ENSTSYG00000032882PSPC19385.071Carlito_syrichta
MGP_SPRETEiJ_G0020232Pspc110095.420ENSCPOG00000000395PSPC110094.847Cavia_porcellus
MGP_SPRETEiJ_G0020232Pspc110097.519ENSCCAG00000033498PSPC110097.519Cebus_capucinus
MGP_SPRETEiJ_G0020232Pspc110096.947ENSCATG00000036434PSPC110096.947Cercocebus_atys
MGP_SPRETEiJ_G0020232Pspc18987.124ENSCLAG00000005241PSPC110087.124Chinchilla_lanigera
MGP_SPRETEiJ_G0020232Pspc110090.649ENSCHOG00000008913PSPC110090.458Choloepus_hoffmanni
MGP_SPRETEiJ_G0020232Pspc19986.553ENSCPBG00000020859PSPC19986.553Chrysemys_picta_bellii
MGP_SPRETEiJ_G0020232Pspc19158.491ENSCSAVG00000003533-6455.882Ciona_savignyi
MGP_SPRETEiJ_G0020232Pspc17884.975ENSCANG00000018948PSPC18799.620Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0020232Pspc110098.853ENSCGRG00001018368Pspc110098.853Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0020232Pspc110098.853ENSCGRG00000011724Pspc110098.853Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0020232Pspc18163.830ENSCSEG00000008899-6565.354Cynoglossus_semilaevis
MGP_SPRETEiJ_G0020232Pspc18569.697ENSCVAG00000007679-8366.147Cyprinodon_variegatus
MGP_SPRETEiJ_G0020232Pspc19968.230ENSDARG00000006621pspc110067.229Danio_rerio
MGP_SPRETEiJ_G0020232Pspc110095.992ENSDNOG00000011078PSPC110096.183Dasypus_novemcinctus
MGP_SPRETEiJ_G0020232Pspc110094.466ENSDORG00000016050Pspc110094.466Dipodomys_ordii
MGP_SPRETEiJ_G0020232Pspc155100.000ENSETEG00000000502-72100.000Echinops_telfairi
MGP_SPRETEiJ_G0020232Pspc18444.898ENSEBUG00000010133pspc17848.822Eptatretus_burgeri
MGP_SPRETEiJ_G0020232Pspc18664.428ENSEBUG00000003964-6272.254Eptatretus_burgeri
MGP_SPRETEiJ_G0020232Pspc110097.132ENSEASG00005000119PSPC110097.132Equus_asinus_asinus
MGP_SPRETEiJ_G0020232Pspc110097.132ENSECAG00000017286PSPC110097.132Equus_caballus
MGP_SPRETEiJ_G0020232Pspc18489.796ENSEEUG00000011288-8881.988Erinaceus_europaeus
MGP_SPRETEiJ_G0020232Pspc19968.499ENSELUG00000003746pspc19472.010Esox_lucius
MGP_SPRETEiJ_G0020232Pspc110097.137ENSFCAG00000027841PSPC110097.137Felis_catus
MGP_SPRETEiJ_G0020232Pspc19988.145ENSFALG00000008750PSPC19988.145Ficedula_albicollis
MGP_SPRETEiJ_G0020232Pspc110093.499ENSFDAG00000002617PSPC110093.499Fukomys_damarensis
MGP_SPRETEiJ_G0020232Pspc18477.551ENSGMOG00000015074pspc19263.105Gadus_morhua
MGP_SPRETEiJ_G0020232Pspc19987.524ENSGALG00000017142PSPC19987.006Gallus_gallus
MGP_SPRETEiJ_G0020232Pspc18467.347ENSGAFG00000006327pspc17275.072Gambusia_affinis
MGP_SPRETEiJ_G0020232Pspc18669.307ENSGACG00000014901pspc19273.171Gasterosteus_aculeatus
MGP_SPRETEiJ_G0020232Pspc18471.429ENSGAGG00000017325-5866.580Gopherus_agassizii
MGP_SPRETEiJ_G0020232Pspc19986.364ENSGAGG00000019164PSPC19986.364Gopherus_agassizii
MGP_SPRETEiJ_G0020232Pspc110097.137ENSGGOG00000003414PSPC110097.137Gorilla_gorilla
MGP_SPRETEiJ_G0020232Pspc19966.250ENSHBUG00000001139pspc110063.401Haplochromis_burtoni
MGP_SPRETEiJ_G0020232Pspc110095.611ENSHGLG00000018811PSPC110094.656Heterocephalus_glaber_female
MGP_SPRETEiJ_G0020232Pspc18491.837ENSHGLG00100007962PSPC110091.977Heterocephalus_glaber_male
MGP_SPRETEiJ_G0020232Pspc18270.312ENSHCOG00000013251pspc19366.033Hippocampus_comes
MGP_SPRETEiJ_G0020232Pspc19870.842ENSIPUG00000013192pspc19172.577Ictalurus_punctatus
MGP_SPRETEiJ_G0020232Pspc110097.710ENSSTOG00000026833PSPC110097.710Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0020232Pspc110097.514ENSJJAG00000018334Pspc110097.514Jaculus_jaculus
MGP_SPRETEiJ_G0020232Pspc18463.265ENSKMAG00000013525-9649.524Kryptolebias_marmoratus
MGP_SPRETEiJ_G0020232Pspc19468.397ENSLBEG00000004474pspc17275.291Labrus_bergylta
MGP_SPRETEiJ_G0020232Pspc19977.895ENSLACG00000010762PSPC19977.632Latimeria_chalumnae
MGP_SPRETEiJ_G0020232Pspc18984.052ENSLOCG00000010832pspc19382.700Lepisosteus_oculatus
MGP_SPRETEiJ_G0020232Pspc110096.176ENSLAFG00000010968PSPC110096.176Loxodonta_africana
MGP_SPRETEiJ_G0020232Pspc110097.328ENSMFAG00000032728PSPC110097.328Macaca_fascicularis
MGP_SPRETEiJ_G0020232Pspc110097.328ENSMMUG00000020262PSPC110097.328Macaca_mulatta
MGP_SPRETEiJ_G0020232Pspc110097.328ENSMNEG00000027401PSPC110097.328Macaca_nemestrina
MGP_SPRETEiJ_G0020232Pspc110098.500ENSMLEG00000039043PSPC1100100.000Mandrillus_leucophaeus
MGP_SPRETEiJ_G0020232Pspc18672.772ENSMAMG00000004333pspc18761.915Mastacembelus_armatus
MGP_SPRETEiJ_G0020232Pspc18172.340ENSMZEG00005028170-6575.000Maylandia_zebra
MGP_SPRETEiJ_G0020232Pspc19955.765ENSMZEG00005005726pspc110053.945Maylandia_zebra
MGP_SPRETEiJ_G0020232Pspc17893.350ENSMGAG00000015134PSPC110093.350Meleagris_gallopavo
MGP_SPRETEiJ_G0020232Pspc110092.918ENSMAUG00000021067Pspc110092.918Mesocricetus_auratus
MGP_SPRETEiJ_G0020232Pspc110097.210ENSMICG00000013970PSPC110096.941Microcebus_murinus
MGP_SPRETEiJ_G0020232Pspc110099.235ENSMOCG00000006060Pspc110099.235Microtus_ochrogaster
MGP_SPRETEiJ_G0020232Pspc18168.085ENSMMOG00000004352pspc15951.929Mola_mola
MGP_SPRETEiJ_G0020232Pspc19996.112ENSMODG00000008029PSPC17895.473Monodelphis_domestica
MGP_SPRETEiJ_G0020232Pspc18672.030ENSMALG00000008914pspc18170.629Monopterus_albus
MGP_SPRETEiJ_G0020232Pspc110099.618MGP_CAROLIEiJ_G0019341Pspc110099.618Mus_caroli
MGP_SPRETEiJ_G0020232Pspc1100100.000ENSMUSG00000021938Pspc110099.809Mus_musculus
MGP_SPRETEiJ_G0020232Pspc1100100.000MGP_PahariEiJ_G0030359Pspc1100100.000Mus_pahari
MGP_SPRETEiJ_G0020232Pspc110096.756ENSMPUG00000013347PSPC110096.756Mustela_putorius_furo
MGP_SPRETEiJ_G0020232Pspc110095.825ENSMLUG00000017663PSPC110095.825Myotis_lucifugus
MGP_SPRETEiJ_G0020232Pspc110097.706ENSNGAG00000011271Pspc110097.706Nannospalax_galili
MGP_SPRETEiJ_G0020232Pspc18170.213ENSNBRG00000014059pspc19260.197Neolamprologus_brichardi
MGP_SPRETEiJ_G0020232Pspc110097.328ENSNLEG00000001294PSPC110097.328Nomascus_leucogenys
MGP_SPRETEiJ_G0020232Pspc18495.312ENSMEUG00000000476PSPC18495.312Notamacropus_eugenii
MGP_SPRETEiJ_G0020232Pspc19987.284ENSODEG00000019012-10084.717Octodon_degus
MGP_SPRETEiJ_G0020232Pspc110084.351ENSODEG00000007817-10080.943Octodon_degus
MGP_SPRETEiJ_G0020232Pspc19966.458ENSONIG00000012010pspc19962.888Oreochromis_niloticus
MGP_SPRETEiJ_G0020232Pspc17697.000ENSOANG00000009017-10097.000Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0020232Pspc19966.667ENSOANG00000011381-9963.619Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0020232Pspc110097.328ENSOCUG00000006153PSPC110097.328Oryctolagus_cuniculus
MGP_SPRETEiJ_G0020232Pspc18673.881ENSORLG00000004232-8764.108Oryzias_latipes
MGP_SPRETEiJ_G0020232Pspc18674.010ENSORLG00020000578PSPC18765.546Oryzias_latipes_hni
MGP_SPRETEiJ_G0020232Pspc18674.010ENSORLG00015017480pspc17771.776Oryzias_latipes_hsok
MGP_SPRETEiJ_G0020232Pspc110097.710ENSOGAG00000012643PSPC110097.710Otolemur_garnettii
MGP_SPRETEiJ_G0020232Pspc110090.857ENSOARG00000014163PSPC110090.857Ovis_aries
MGP_SPRETEiJ_G0020232Pspc18991.845ENSPPAG00000009836PSPC19696.765Pan_paniscus
MGP_SPRETEiJ_G0020232Pspc110097.137ENSPPRG00000008833PSPC110097.137Panthera_pardus
MGP_SPRETEiJ_G0020232Pspc110082.409ENSPTIG00000016917PSPC110082.409Panthera_tigris_altaica
MGP_SPRETEiJ_G0020232Pspc19997.192ENSPTRG00000005677PSPC19997.125Pan_troglodytes
MGP_SPRETEiJ_G0020232Pspc110097.137ENSPANG00000001992PSPC110097.137Papio_anubis
MGP_SPRETEiJ_G0020232Pspc18779.259ENSPKIG00000003578pspc18177.701Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0020232Pspc19986.604ENSPSIG00000005168PSPC19987.091Pelodiscus_sinensis
MGP_SPRETEiJ_G0020232Pspc18161.702ENSPMGG00000015135pspc18669.968Periophthalmus_magnuspinnatus
MGP_SPRETEiJ_G0020232Pspc110099.426ENSPEMG00000015214Pspc110099.426Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0020232Pspc18438.776ENSPMAG00000004618pspc17947.692Petromyzon_marinus
MGP_SPRETEiJ_G0020232Pspc19996.320ENSPCIG00000017680PSPC110095.985Phascolarctos_cinereus
MGP_SPRETEiJ_G0020232Pspc19070.534ENSPFOG00000003362pspc19366.126Poecilia_formosa
MGP_SPRETEiJ_G0020232Pspc19070.534ENSPLAG00000011540pspc19265.720Poecilia_latipinna
MGP_SPRETEiJ_G0020232Pspc18471.429ENSPLAG00000004407-5364.770Poecilia_latipinna
MGP_SPRETEiJ_G0020232Pspc19070.070ENSPMEG00000008322pspc19265.314Poecilia_mexicana
MGP_SPRETEiJ_G0020232Pspc18471.429ENSPMEG00000001025-5364.770Poecilia_mexicana
MGP_SPRETEiJ_G0020232Pspc19069.838ENSPREG00000007786pspc19265.720Poecilia_reticulata
MGP_SPRETEiJ_G0020232Pspc110097.210ENSPPYG00000005186PSPC110096.941Pongo_abelii
MGP_SPRETEiJ_G0020232Pspc178100.000ENSPCAG00000008314-6699.390Procavia_capensis
MGP_SPRETEiJ_G0020232Pspc110093.321ENSPCOG00000014364PSPC110093.321Propithecus_coquereli
MGP_SPRETEiJ_G0020232Pspc110092.734ENSPVAG00000005036PSPC110093.690Pteropus_vampyrus
MGP_SPRETEiJ_G0020232Pspc19956.042ENSPNYG00000008893pspc110054.128Pundamilia_nyererei
MGP_SPRETEiJ_G0020232Pspc19970.085ENSPNAG00000016511pspc19866.667Pygocentrus_nattereri
MGP_SPRETEiJ_G0020232Pspc110099.044ENSRNOG00000020782Pspc110099.044Rattus_norvegicus
MGP_SPRETEiJ_G0020232Pspc19397.336ENSRBIG00000036057PSPC110097.336Rhinopithecus_bieti
MGP_SPRETEiJ_G0020232Pspc110097.137ENSRROG00000036334PSPC110097.137Rhinopithecus_roxellana
MGP_SPRETEiJ_G0020232Pspc17987.923ENSSBOG00000028172PSPC19094.946Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0020232Pspc110090.684ENSSHAG00000004696PSPC110090.684Sarcophilus_harrisii
MGP_SPRETEiJ_G0020232Pspc18681.000ENSSFOG00015001395pspc18978.322Scleropages_formosus
MGP_SPRETEiJ_G0020232Pspc18671.883ENSSMAG00000001761pspc18674.286Scophthalmus_maximus
MGP_SPRETEiJ_G0020232Pspc18675.743ENSSDUG00000010651pspc17673.832Seriola_dumerili
MGP_SPRETEiJ_G0020232Pspc18469.388ENSSLDG00000004284pspc18161.521Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0020232Pspc110089.101ENSSARG00000000888PSPC110089.484Sorex_araneus
MGP_SPRETEiJ_G0020232Pspc18473.469ENSSPUG00000001136-5361.453Sphenodon_punctatus
MGP_SPRETEiJ_G0020232Pspc18491.837ENSSPUG00000008550PSPC19975.432Sphenodon_punctatus
MGP_SPRETEiJ_G0020232Pspc18874.396ENSSPAG00000001921pspc18269.824Stegastes_partitus
MGP_SPRETEiJ_G0020232Pspc110095.411ENSSSCG00000009569PSPC110096.000Sus_scrofa
MGP_SPRETEiJ_G0020232Pspc18994.433ENSTGUG00000011295PSPC110094.433Taeniopygia_guttata
MGP_SPRETEiJ_G0020232Pspc19462.416ENSTRUG00000011335pspc17766.019Takifugu_rubripes
MGP_SPRETEiJ_G0020232Pspc18667.327ENSTNIG00000010358pspc18466.114Tetraodon_nigroviridis
MGP_SPRETEiJ_G0020232Pspc19979.698ENSTBEG00000002361PSPC110075.908Tupaia_belangeri
MGP_SPRETEiJ_G0020232Pspc110095.793ENSTTRG00000003343PSPC110095.793Tursiops_truncatus
MGP_SPRETEiJ_G0020232Pspc18491.837ENSUAMG00000012309PSPC110096.866Ursus_americanus
MGP_SPRETEiJ_G0020232Pspc19397.131ENSUMAG00000013993PSPC110097.131Ursus_maritimus
MGP_SPRETEiJ_G0020232Pspc17698.250ENSVPAG00000010029PSPC110098.250Vicugna_pacos
MGP_SPRETEiJ_G0020232Pspc110097.137ENSVVUG00000006414PSPC110097.158Vulpes_vulpes
MGP_SPRETEiJ_G0020232Pspc18465.306ENSXCOG00000017438pspc18374.212Xiphophorus_couchianus
MGP_SPRETEiJ_G0020232Pspc18465.306ENSXMAG00000007929pspc18374.499Xiphophorus_maculatus

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