EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0020359 (Gene tree)
Gene ID: -
Gene Symbol: R3hcc1
Alias: 1700020M16Rik
Full Name: R3H domain and coiled-coil containing 1
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Minus strand
Length: 12035 bases
Position: chr14:60031855-60043889
Accession: 1919093
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0038994	R3H	PF01424.22	1.9e-15	1	1
MGP_SPRETEiJ_P0038995	R3H	PF01424.22	1.9e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0038998	-	440	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0038994	-	1735	-	MGP_SPRETEiJ_P0038994	491 (aa)	-	-
MGP_SPRETEiJ_T0038995	-	1967	-	MGP_SPRETEiJ_P0038995	491 (aa)	-	-
MGP_SPRETEiJ_T0038996	-	410	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0038997	-	829	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0020359's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0020359's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0020359	R3hcc1	99	59.838	ENSG00000104679	R3HCC1	100	97.674	Homo_sapiens
MGP_SPRETEiJ_G0020359	R3hcc1	58	44.667	ENSAPOG00000003616	r3hcc1	79	44.667	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0020359	R3hcc1	99	62.978	ENSAMEG00000002963	R3HCC1	92	62.374	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0020359	R3hcc1	58	41.781	ENSACIG00000017144	r3hcc1	84	38.356	Amphilophus_citrinellus
MGP_SPRETEiJ_G0020359	R3hcc1	55	46.154	ENSAOCG00000003945	r3hcc1	81	45.333	Amphiprion_ocellaris
MGP_SPRETEiJ_G0020359	R3hcc1	57	46.154	ENSAPEG00000003613	r3hcc1	81	44.667	Amphiprion_percula
MGP_SPRETEiJ_G0020359	R3hcc1	54	41.781	ENSATEG00000023860	r3hcc1	66	42.667	Anabas_testudineus
MGP_SPRETEiJ_G0020359	R3hcc1	100	44.269	ENSACAG00000016627	R3HCC1	99	43.340	Anolis_carolinensis
MGP_SPRETEiJ_G0020359	R3hcc1	84	81.098	ENSANAG00000036169	R3HCC1	95	64.848	Aotus_nancymaae
MGP_SPRETEiJ_G0020359	R3hcc1	99	61.992	ENSBTAG00000025830	R3HCC1	96	62.020	Bos_taurus
MGP_SPRETEiJ_G0020359	R3hcc1	99	63.508	ENSCJAG00000020118	R3HCC1	99	56.048	Callithrix_jacchus
MGP_SPRETEiJ_G0020359	R3hcc1	99	56.539	ENSCAFG00000009210	R3HCC1	96	57.746	Canis_familiaris
MGP_SPRETEiJ_G0020359	R3hcc1	85	54.739	ENSCAFG00020012870	R3HCC1	86	54.502	Canis_lupus_dingo
MGP_SPRETEiJ_G0020359	R3hcc1	99	60.569	ENSCHIG00000009107	R3HCC1	99	59.838	Capra_hircus
MGP_SPRETEiJ_G0020359	R3hcc1	99	60.887	ENSTSYG00000000511	R3HCC1	77	64.718	Carlito_syrichta
MGP_SPRETEiJ_G0020359	R3hcc1	90	54.911	ENSCAPG00000015813	R3HCC1	52	62.673	Cavia_aperea
MGP_SPRETEiJ_G0020359	R3hcc1	99	62.272	ENSCPOG00000009696	R3HCC1	55	68.340	Cavia_porcellus
MGP_SPRETEiJ_G0020359	R3hcc1	99	59.596	ENSCCAG00000037811	R3HCC1	99	56.653	Cebus_capucinus
MGP_SPRETEiJ_G0020359	R3hcc1	99	60.243	ENSCATG00000032971	R3HCC1	99	56.795	Cercocebus_atys
MGP_SPRETEiJ_G0020359	R3hcc1	99	52.218	ENSCLAG00000015556	R3HCC1	83	63.244	Chinchilla_lanigera
MGP_SPRETEiJ_G0020359	R3hcc1	99	60.041	ENSCSAG00000016250	R3HCC1	91	63.489	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0020359	R3hcc1	98	56.762	ENSCHOG00000000396	R3HCC1	94	60.082	Choloepus_hoffmanni
MGP_SPRETEiJ_G0020359	R3hcc1	99	61.538	ENSCANG00000029441	R3HCC1	99	58.300	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0020359	R3hcc1	100	79.352	ENSCGRG00001014977	R3hcc1	100	79.352	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0020359	R3hcc1	100	79.352	ENSCGRG00000004454	R3hcc1	100	79.352	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0020359	R3hcc1	96	31.092	ENSCSEG00000005748	r3hcc1	77	46.711	Cynoglossus_semilaevis
MGP_SPRETEiJ_G0020359	R3hcc1	60	43.448	ENSDARG00000099593	r3hcc1	74	43.448	Danio_rerio
MGP_SPRETEiJ_G0020359	R3hcc1	99	62.041	ENSDNOG00000007168	R3HCC1	92	62.449	Dasypus_novemcinctus
MGP_SPRETEiJ_G0020359	R3hcc1	99	64.837	ENSDORG00000026365	R3hcc1	99	65.650	Dipodomys_ordii
MGP_SPRETEiJ_G0020359	R3hcc1	99	55.960	ENSETEG00000001147	R3HCC1	97	56.768	Echinops_telfairi
MGP_SPRETEiJ_G0020359	R3hcc1	99	58.824	ENSEASG00005018782	R3HCC1	81	61.492	Equus_asinus_asinus
MGP_SPRETEiJ_G0020359	R3hcc1	99	58.468	ENSECAG00000025013	R3HCC1	98	61.895	Equus_caballus
MGP_SPRETEiJ_G0020359	R3hcc1	99	60.324	ENSEEUG00000011918	R3HCC1	96	60.526	Erinaceus_europaeus
MGP_SPRETEiJ_G0020359	R3hcc1	57	45.860	ENSELUG00000023650	r3hcc1	69	49.474	Esox_lucius
MGP_SPRETEiJ_G0020359	R3hcc1	98	63.299	ENSFCAG00000012395	R3HCC1	95	63.244	Felis_catus
MGP_SPRETEiJ_G0020359	R3hcc1	97	38.134	ENSFALG00000001646	R3HCC1	81	37.698	Ficedula_albicollis
MGP_SPRETEiJ_G0020359	R3hcc1	57	36.620	ENSGMOG00000017590	-	68	43.333	Gadus_morhua
MGP_SPRETEiJ_G0020359	R3hcc1	58	45.390	ENSGAFG00000008747	-	65	43.624	Gambusia_affinis
MGP_SPRETEiJ_G0020359	R3hcc1	62	43.210	ENSGACG00000008447	r3hcc1	69	44.000	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0020359	R3hcc1	85	81.707	ENSGGOG00000013817	R3HCC1	99	64.300	Gorilla_gorilla
MGP_SPRETEiJ_G0020359	R3hcc1	83	77.358	ENSHGLG00000010517	R3HCC1	92	62.351	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0020359	R3hcc1	83	77.358	ENSHGLG00100006388	R3HCC1	92	62.351	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0020359	R3hcc1	69	38.462	ENSHCOG00000011745	r3hcc1	70	44.898	Hippocampus_comes
MGP_SPRETEiJ_G0020359	R3hcc1	74	43.448	ENSIPUG00000024504	r3hcc1	64	45.890	Ictalurus_punctatus
MGP_SPRETEiJ_G0020359	R3hcc1	75	78.049	ENSSTOG00000027130	R3HCC1	78	78.049	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0020359	R3hcc1	99	67.535	ENSJJAG00000013075	R3hcc1	99	68.273	Jaculus_jaculus
MGP_SPRETEiJ_G0020359	R3hcc1	54	44.056	ENSKMAG00000000286	r3hcc1	68	42.667	Kryptolebias_marmoratus
MGP_SPRETEiJ_G0020359	R3hcc1	64	50.345	ENSLACG00000011894	R3HCC1	65	50.340	Latimeria_chalumnae
MGP_SPRETEiJ_G0020359	R3hcc1	97	33.750	ENSLOCG00000015442	r3hcc1	78	46.479	Lepisosteus_oculatus
MGP_SPRETEiJ_G0020359	R3hcc1	99	59.519	ENSLAFG00000016137	R3HCC1	95	61.010	Loxodonta_africana
MGP_SPRETEiJ_G0020359	R3hcc1	99	60.243	ENSMFAG00000032894	R3HCC1	99	56.795	Macaca_fascicularis
MGP_SPRETEiJ_G0020359	R3hcc1	99	60.446	ENSMMUG00000016655	R3HCC1	99	56.998	Macaca_mulatta
MGP_SPRETEiJ_G0020359	R3hcc1	85	80.488	ENSMNEG00000043283	R3HCC1	99	56.795	Macaca_nemestrina
MGP_SPRETEiJ_G0020359	R3hcc1	99	60.243	ENSMLEG00000030147	R3HCC1	99	56.795	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0020359	R3hcc1	55	44.898	ENSMAMG00000018146	r3hcc1	67	44.898	Mastacembelus_armatus
MGP_SPRETEiJ_G0020359	R3hcc1	98	36.895	ENSMGAG00000001356	R3HCC1	62	58.940	Meleagris_gallopavo
MGP_SPRETEiJ_G0020359	R3hcc1	100	77.264	ENSMAUG00000016096	R3hcc1	100	76.190	Mesocricetus_auratus
MGP_SPRETEiJ_G0020359	R3hcc1	99	62.118	ENSMICG00000011146	R3HCC1	94	63.211	Microcebus_murinus
MGP_SPRETEiJ_G0020359	R3hcc1	100	76.721	ENSMOCG00000018508	R3hcc1	100	77.733	Microtus_ochrogaster
MGP_SPRETEiJ_G0020359	R3hcc1	100	96.945	MGP_CAROLIEiJ_G0019467	R3hcc1	100	96.945	Mus_caroli
MGP_SPRETEiJ_G0020359	R3hcc1	100	99.389	ENSMUSG00000034194	R3hcc1	100	99.389	Mus_musculus
MGP_SPRETEiJ_G0020359	R3hcc1	100	89.940	MGP_PahariEiJ_G0030484	R3hcc1	100	90.141	Mus_pahari
MGP_SPRETEiJ_G0020359	R3hcc1	99	57.631	ENSMPUG00000003457	R3HCC1	87	60.843	Mustela_putorius_furo
MGP_SPRETEiJ_G0020359	R3hcc1	83	75.000	ENSMLUG00000000266	R3HCC1	92	59.798	Myotis_lucifugus
MGP_SPRETEiJ_G0020359	R3hcc1	99	64.510	ENSNGAG00000016747	R3hcc1	99	73.131	Nannospalax_galili
MGP_SPRETEiJ_G0020359	R3hcc1	91	58.889	ENSNLEG00000015944	R3HCC1	85	62.667	Nomascus_leucogenys
MGP_SPRETEiJ_G0020359	R3hcc1	78	62.637	ENSMEUG00000010587	R3HCC1	98	49.087	Notamacropus_eugenii
MGP_SPRETEiJ_G0020359	R3hcc1	73	74.251	ENSOPRG00000013390	R3HCC1	78	75.000	Ochotona_princeps
MGP_SPRETEiJ_G0020359	R3hcc1	98	60.581	ENSODEG00000007529	R3HCC1	100	61.258	Octodon_degus
MGP_SPRETEiJ_G0020359	R3hcc1	99	47.992	ENSOCUG00000023554	R3HCC1	84	59.063	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0020359	R3hcc1	60	42.442	ENSORLG00000016816	r3hcc1	71	44.138	Oryzias_latipes
MGP_SPRETEiJ_G0020359	R3hcc1	60	42.442	ENSORLG00020012005	r3hcc1	71	44.138	Oryzias_latipes_hni
MGP_SPRETEiJ_G0020359	R3hcc1	60	43.023	ENSORLG00015007018	r3hcc1	71	44.828	Oryzias_latipes_hsok
MGP_SPRETEiJ_G0020359	R3hcc1	66	39.881	ENSOMEG00000000816	r3hcc1	81	42.069	Oryzias_melastigma
MGP_SPRETEiJ_G0020359	R3hcc1	51	65.200	ENSOGAG00000001291	R3HCC1	92	61.866	Otolemur_garnettii
MGP_SPRETEiJ_G0020359	R3hcc1	99	60.816	ENSOARG00000010146	R3HCC1	96	60.161	Ovis_aries
MGP_SPRETEiJ_G0020359	R3hcc1	99	58.943	ENSPPAG00000033165	R3HCC1	99	63.692	Pan_paniscus
MGP_SPRETEiJ_G0020359	R3hcc1	99	59.635	ENSPPRG00000002522	R3HCC1	99	63.083	Panthera_pardus
MGP_SPRETEiJ_G0020359	R3hcc1	93	60.175	ENSPTIG00000011230	R3HCC1	95	60.265	Panthera_tigris_altaica
MGP_SPRETEiJ_G0020359	R3hcc1	99	60.041	ENSPTRG00000020076	R3HCC1	99	58.824	Pan_troglodytes
MGP_SPRETEiJ_G0020359	R3hcc1	99	60.041	ENSPANG00000000453	R3HCC1	99	56.795	Papio_anubis
MGP_SPRETEiJ_G0020359	R3hcc1	55	48.000	ENSPKIG00000020397	-	68	48.000	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0020359	R3hcc1	55	48.000	ENSPKIG00000014426	-	74	48.000	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0020359	R3hcc1	98	43.522	ENSPSIG00000017664	R3HCC1	97	42.222	Pelodiscus_sinensis
MGP_SPRETEiJ_G0020359	R3hcc1	100	79.596	ENSPEMG00000007118	R3hcc1	100	78.990	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0020359	R3hcc1	91	44.912	ENSPCIG00000022718	-	64	66.883	Phascolarctos_cinereus
MGP_SPRETEiJ_G0020359	R3hcc1	97	31.866	ENSPFOG00000022301	r3hcc1	65	41.892	Poecilia_formosa
MGP_SPRETEiJ_G0020359	R3hcc1	97	31.393	ENSPLAG00000010794	r3hcc1	65	41.892	Poecilia_latipinna
MGP_SPRETEiJ_G0020359	R3hcc1	97	31.866	ENSPMEG00000022515	r3hcc1	65	41.892	Poecilia_mexicana
MGP_SPRETEiJ_G0020359	R3hcc1	97	31.447	ENSPREG00000000713	r3hcc1	64	41.216	Poecilia_reticulata
MGP_SPRETEiJ_G0020359	R3hcc1	93	58.621	ENSPPYG00000018436	R3HCC1	99	61.656	Pongo_abelii
MGP_SPRETEiJ_G0020359	R3hcc1	68	77.528	ENSPCAG00000012229	R3HCC1	72	77.528	Procavia_capensis
MGP_SPRETEiJ_G0020359	R3hcc1	99	62.372	ENSPCOG00000027554	R3HCC1	99	62.753	Propithecus_coquereli
MGP_SPRETEiJ_G0020359	R3hcc1	99	57.906	ENSPVAG00000009829	R3HCC1	95	62.834	Pteropus_vampyrus
MGP_SPRETEiJ_G0020359	R3hcc1	58	43.357	ENSPNAG00000023875	r3hcc1	74	43.056	Pygocentrus_nattereri
MGP_SPRETEiJ_G0020359	R3hcc1	100	86.613	ENSRNOG00000016777	AABR07018321.1	82	87.018	Rattus_norvegicus
MGP_SPRETEiJ_G0020359	R3hcc1	99	61.055	ENSRBIG00000028045	R3HCC1	99	65.314	Rhinopithecus_bieti
MGP_SPRETEiJ_G0020359	R3hcc1	99	61.055	ENSRROG00000031126	R3HCC1	99	58.215	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0020359	R3hcc1	99	62.653	ENSSBOG00000022590	R3HCC1	99	63.083	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0020359	R3hcc1	57	86.905	ENSSHAG00000016526	-	52	86.905	Sarcophilus_harrisii
MGP_SPRETEiJ_G0020359	R3hcc1	56	47.436	ENSSFOG00015013507	r3hcc1	70	46.980	Scleropages_formosus
MGP_SPRETEiJ_G0020359	R3hcc1	63	46.154	ENSSDUG00000022786	r3hcc1	73	44.966	Seriola_dumerili
MGP_SPRETEiJ_G0020359	R3hcc1	63	46.154	ENSSLDG00000019031	r3hcc1	73	44.966	Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0020359	R3hcc1	82	45.349	ENSSPAG00000013497	r3hcc1	93	47.020	Stegastes_partitus
MGP_SPRETEiJ_G0020359	R3hcc1	98	58.058	ENSSSCG00000037347	-	92	57.438	Sus_scrofa
MGP_SPRETEiJ_G0020359	R3hcc1	99	58.954	ENSSSCG00000039915	-	93	61.569	Sus_scrofa
MGP_SPRETEiJ_G0020359	R3hcc1	60	37.805	ENSTRUG00000015880	r3hcc1	66	41.667	Takifugu_rubripes
MGP_SPRETEiJ_G0020359	R3hcc1	98	52.675	ENSTTRG00000012247	R3HCC1	94	56.057	Tursiops_truncatus
MGP_SPRETEiJ_G0020359	R3hcc1	98	62.218	ENSUAMG00000007344	R3HCC1	98	61.475	Ursus_americanus
MGP_SPRETEiJ_G0020359	R3hcc1	99	58.811	ENSVVUG00000005056	R3HCC1	96	59.759	Vulpes_vulpes
MGP_SPRETEiJ_G0020359	R3hcc1	56	43.056	ENSXCOG00000017626	r3hcc1	61	42.000	Xiphophorus_couchianus
MGP_SPRETEiJ_G0020359	R3hcc1	59	43.357	ENSXMAG00000018375	r3hcc1	65	42.282	Xiphophorus_maculatus