EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0020839 (Gene tree)
Gene ID: -
Gene Symbol: Cpsf1
Alias: -
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Minus strand
Length: 11860 bases
Position: chr15:75855518-75867377
Accession: 2679722
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0040518	CPSF_A	PF03178.15	5.2e-92	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0040518	-	4515	-	MGP_SPRETEiJ_P0040518	1441 (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0020839's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0020839's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0020839	Cpsf1	100	96.535	ENSG00000071894	CPSF1	100	96.535	Homo_sapiens
MGP_SPRETEiJ_G0020839	Cpsf1	100	78.026	ENSAPOG00000019621	cpsf1	100	78.229	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0020839	Cpsf1	97	94.711	ENSAMEG00000005557	CPSF1	100	94.711	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0020839	Cpsf1	100	78.601	ENSACIG00000006112	cpsf1	100	78.947	Amphilophus_citrinellus
MGP_SPRETEiJ_G0020839	Cpsf1	100	79.669	ENSAOCG00000007120	cpsf1	100	79.876	Amphiprion_ocellaris
MGP_SPRETEiJ_G0020839	Cpsf1	100	80.014	ENSAPEG00000005755	cpsf1	100	80.152	Amphiprion_percula
MGP_SPRETEiJ_G0020839	Cpsf1	100	78.003	ENSATEG00000011097	cpsf1	100	78.340	Anabas_testudineus
MGP_SPRETEiJ_G0020839	Cpsf1	93	81.757	ENSACAG00000009655	CPSF1	100	81.757	Anolis_carolinensis
MGP_SPRETEiJ_G0020839	Cpsf1	100	96.602	ENSANAG00000036514	CPSF1	100	96.602	Aotus_nancymaae
MGP_SPRETEiJ_G0020839	Cpsf1	100	77.701	ENSACLG00000012231	cpsf1	99	79.085	Astatotilapia_calliptera
MGP_SPRETEiJ_G0020839	Cpsf1	100	73.997	ENSAMXG00000008485	cpsf1	100	73.167	Astyanax_mexicanus
MGP_SPRETEiJ_G0020839	Cpsf1	100	94.350	ENSBTAG00000008355	CPSF1	100	94.597	Bos_taurus
MGP_SPRETEiJ_G0020839	Cpsf1	100	32.016	WBGene00022301	cpsf-1	100	40.169	Caenorhabditis_elegans
MGP_SPRETEiJ_G0020839	Cpsf1	100	96.533	ENSCJAG00000021421	CPSF1	100	96.533	Callithrix_jacchus
MGP_SPRETEiJ_G0020839	Cpsf1	97	96.280	ENSCAFG00000001600	CPSF1	100	96.387	Canis_familiaris
MGP_SPRETEiJ_G0020839	Cpsf1	100	96.468	ENSCAFG00020020821	CPSF1	100	96.468	Canis_lupus_dingo
MGP_SPRETEiJ_G0020839	Cpsf1	100	90.638	ENSCHIG00000015833	CPSF1	100	90.638	Capra_hircus
MGP_SPRETEiJ_G0020839	Cpsf1	100	97.295	ENSTSYG00000028560	CPSF1	100	97.295	Carlito_syrichta
MGP_SPRETEiJ_G0020839	Cpsf1	97	96.413	ENSCAPG00000014921	CPSF1	99	96.413	Cavia_aperea
MGP_SPRETEiJ_G0020839	Cpsf1	100	95.978	ENSCPOG00000011448	CPSF1	100	95.978	Cavia_porcellus
MGP_SPRETEiJ_G0020839	Cpsf1	100	96.741	ENSCCAG00000037658	CPSF1	100	96.741	Cebus_capucinus
MGP_SPRETEiJ_G0020839	Cpsf1	100	96.394	ENSCATG00000037234	CPSF1	99	97.910	Cercocebus_atys
MGP_SPRETEiJ_G0020839	Cpsf1	100	97.849	ENSCLAG00000012166	CPSF1	100	97.849	Chinchilla_lanigera
MGP_SPRETEiJ_G0020839	Cpsf1	100	96.533	ENSCSAG00000008502	CPSF1	100	96.533	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0020839	Cpsf1	99	88.025	ENSCPBG00000018910	CPSF1	96	88.025	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0020839	Cpsf1	96	48.672	ENSCING00000000514	-	100	48.600	Ciona_intestinalis
MGP_SPRETEiJ_G0020839	Cpsf1	99	48.454	ENSCSAVG00000002293	-	98	49.765	Ciona_savignyi
MGP_SPRETEiJ_G0020839	Cpsf1	99	90.903	ENSCANG00000032760	CPSF1	99	90.903	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0020839	Cpsf1	100	98.890	ENSCGRG00001016344	Cpsf1	100	98.890	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0020839	Cpsf1	100	96.391	ENSCGRG00000003118	Cpsf1	100	96.391	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0020839	Cpsf1	100	77.824	ENSCSEG00000013464	cpsf1	100	78.032	Cynoglossus_semilaevis
MGP_SPRETEiJ_G0020839	Cpsf1	85	77.133	ENSCVAG00000014059	cpsf1	100	75.926	Cyprinodon_variegatus
MGP_SPRETEiJ_G0020839	Cpsf1	100	79.325	ENSDARG00000034178	cpsf1	100	79.394	Danio_rerio
MGP_SPRETEiJ_G0020839	Cpsf1	57	96.522	ENSDNOG00000043654	CPSF1	96	91.421	Dasypus_novemcinctus
MGP_SPRETEiJ_G0020839	Cpsf1	97	97.131	ENSDORG00000006278	Cpsf1	99	97.131	Dipodomys_ordii
MGP_SPRETEiJ_G0020839	Cpsf1	100	44.983	FBgn0024698	Cpsf160	100	45.027	Drosophila_melanogaster
MGP_SPRETEiJ_G0020839	Cpsf1	80	98.658	ENSETEG00000006022	CPSF1	83	98.658	Echinops_telfairi
MGP_SPRETEiJ_G0020839	Cpsf1	100	97.091	ENSEASG00005010774	CPSF1	100	97.091	Equus_asinus_asinus
MGP_SPRETEiJ_G0020839	Cpsf1	100	97.091	ENSECAG00000022209	CPSF1	100	97.091	Equus_caballus
MGP_SPRETEiJ_G0020839	Cpsf1	100	94.671	ENSEEUG00000000471	CPSF1	100	94.671	Erinaceus_europaeus
MGP_SPRETEiJ_G0020839	Cpsf1	100	77.793	ENSELUG00000012271	cpsf1	100	78.273	Esox_lucius
MGP_SPRETEiJ_G0020839	Cpsf1	100	97.641	ENSFDAG00000016060	CPSF1	100	97.641	Fukomys_damarensis
MGP_SPRETEiJ_G0020839	Cpsf1	100	77.119	ENSFHEG00000016801	cpsf1	100	77.188	Fundulus_heteroclitus
MGP_SPRETEiJ_G0020839	Cpsf1	100	78.222	ENSGMOG00000000796	cpsf1	100	78.429	Gadus_morhua
MGP_SPRETEiJ_G0020839	Cpsf1	95	85.714	ENSGAFG00000018890	cpsf1	100	85.714	Gambusia_affinis
MGP_SPRETEiJ_G0020839	Cpsf1	100	78.611	ENSGACG00000008703	cpsf1	100	78.601	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0020839	Cpsf1	100	84.360	ENSGAGG00000004276	CPSF1	98	88.077	Gopherus_agassizii
MGP_SPRETEiJ_G0020839	Cpsf1	100	96.600	ENSGGOG00000016185	CPSF1	100	96.600	Gorilla_gorilla
MGP_SPRETEiJ_G0020839	Cpsf1	100	79.986	ENSHBUG00000018900	cpsf1	100	80.125	Haplochromis_burtoni
MGP_SPRETEiJ_G0020839	Cpsf1	100	97.710	ENSHGLG00000016139	CPSF1	100	97.710	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0020839	Cpsf1	100	97.641	ENSHGLG00100009750	CPSF1	100	97.641	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0020839	Cpsf1	100	77.341	ENSHCOG00000018509	cpsf1	100	77.257	Hippocampus_comes
MGP_SPRETEiJ_G0020839	Cpsf1	100	76.341	ENSIPUG00000011259	cpsf1	100	76.341	Ictalurus_punctatus
MGP_SPRETEiJ_G0020839	Cpsf1	97	97.069	ENSSTOG00000009957	CPSF1	99	97.069	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0020839	Cpsf1	100	97.849	ENSJJAG00000023002	Cpsf1	100	97.849	Jaculus_jaculus
MGP_SPRETEiJ_G0020839	Cpsf1	91	85.893	ENSKMAG00000001940	cpsf1	99	85.893	Kryptolebias_marmoratus
MGP_SPRETEiJ_G0020839	Cpsf1	100	77.522	ENSLBEG00000003601	cpsf1	100	77.981	Labrus_bergylta
MGP_SPRETEiJ_G0020839	Cpsf1	88	81.731	ENSLACG00000000233	CPSF1	92	81.731	Latimeria_chalumnae
MGP_SPRETEiJ_G0020839	Cpsf1	100	78.522	ENSLOCG00000008484	cpsf1	100	78.798	Lepisosteus_oculatus
MGP_SPRETEiJ_G0020839	Cpsf1	97	95.490	ENSLAFG00000022601	CPSF1	100	95.490	Loxodonta_africana
MGP_SPRETEiJ_G0020839	Cpsf1	100	96.394	ENSMFAG00000037013	CPSF1	99	97.612	Macaca_fascicularis
MGP_SPRETEiJ_G0020839	Cpsf1	100	96.463	ENSMMUG00000007380	CPSF1	100	96.463	Macaca_mulatta
MGP_SPRETEiJ_G0020839	Cpsf1	97	96.485	ENSMNEG00000043564	CPSF1	100	96.485	Macaca_nemestrina
MGP_SPRETEiJ_G0020839	Cpsf1	100	96.394	ENSMLEG00000043010	CPSF1	99	97.612	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0020839	Cpsf1	100	78.634	ENSMAMG00000003803	cpsf1	100	78.837	Mastacembelus_armatus
MGP_SPRETEiJ_G0020839	Cpsf1	100	77.839	ENSMZEG00005001168	cpsf1	100	77.978	Maylandia_zebra
MGP_SPRETEiJ_G0020839	Cpsf1	100	98.890	ENSMAUG00000003601	Cpsf1	100	98.890	Mesocricetus_auratus
MGP_SPRETEiJ_G0020839	Cpsf1	100	97.294	ENSMICG00000015767	CPSF1	100	97.294	Microcebus_murinus
MGP_SPRETEiJ_G0020839	Cpsf1	100	98.751	ENSMOCG00000022758	Cpsf1	100	98.751	Microtus_ochrogaster
MGP_SPRETEiJ_G0020839	Cpsf1	100	79.239	ENSMMOG00000021245	cpsf1	100	79.377	Mola_mola
MGP_SPRETEiJ_G0020839	Cpsf1	100	93.099	ENSMODG00000010755	CPSF1	100	93.099	Monodelphis_domestica
MGP_SPRETEiJ_G0020839	Cpsf1	100	77.657	ENSMALG00000020545	cpsf1	100	77.861	Monopterus_albus
MGP_SPRETEiJ_G0020839	Cpsf1	100	99.931	MGP_CAROLIEiJ_G0019936	Cpsf1	100	99.931	Mus_caroli
MGP_SPRETEiJ_G0020839	Cpsf1	100	99.931	ENSMUSG00000034022	Cpsf1	100	99.931	Mus_musculus
MGP_SPRETEiJ_G0020839	Cpsf1	100	99.584	MGP_PahariEiJ_G0019946	Cpsf1	100	99.584	Mus_pahari
MGP_SPRETEiJ_G0020839	Cpsf1	94	95.923	ENSMPUG00000006419	CPSF1	93	95.923	Mustela_putorius_furo
MGP_SPRETEiJ_G0020839	Cpsf1	100	97.988	ENSNGAG00000022460	Cpsf1	100	97.988	Nannospalax_galili
MGP_SPRETEiJ_G0020839	Cpsf1	100	75.087	ENSNBRG00000000813	cpsf1	100	75.087	Neolamprologus_brichardi
MGP_SPRETEiJ_G0020839	Cpsf1	86	84.926	ENSNLEG00000010633	-	100	88.889	Nomascus_leucogenys
MGP_SPRETEiJ_G0020839	Cpsf1	82	98.256	ENSMEUG00000014922	CPSF1	85	98.256	Notamacropus_eugenii
MGP_SPRETEiJ_G0020839	Cpsf1	61	96.939	ENSOPRG00000004693	-	71	96.939	Ochotona_princeps
MGP_SPRETEiJ_G0020839	Cpsf1	100	97.988	ENSODEG00000013995	CPSF1	100	97.988	Octodon_degus
MGP_SPRETEiJ_G0020839	Cpsf1	100	80.332	ENSONIG00000007676	cpsf1	100	80.471	Oreochromis_niloticus
MGP_SPRETEiJ_G0020839	Cpsf1	58	92.857	ENSOANG00000010716	CPSF1	88	92.857	Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0020839	Cpsf1	100	77.702	ENSORLG00000013544	cpsf1	92	86.831	Oryzias_latipes
MGP_SPRETEiJ_G0020839	Cpsf1	100	77.838	ENSORLG00020021693	cpsf1	92	86.831	Oryzias_latipes_hni
MGP_SPRETEiJ_G0020839	Cpsf1	100	77.687	ENSORLG00015009979	cpsf1	100	77.755	Oryzias_latipes_hsok
MGP_SPRETEiJ_G0020839	Cpsf1	100	77.861	ENSOMEG00000011849	cpsf1	100	78.065	Oryzias_melastigma
MGP_SPRETEiJ_G0020839	Cpsf1	100	97.157	ENSOGAG00000000315	CPSF1	100	97.157	Otolemur_garnettii
MGP_SPRETEiJ_G0020839	Cpsf1	100	96.602	ENSPPAG00000019280	CPSF1	100	96.602	Pan_paniscus
MGP_SPRETEiJ_G0020839	Cpsf1	100	96.602	ENSPTRG00000049288	-	100	96.602	Pan_troglodytes
MGP_SPRETEiJ_G0020839	Cpsf1	100	94.956	ENSPTRG00000051253	-	100	94.956	Pan_troglodytes
MGP_SPRETEiJ_G0020839	Cpsf1	97	96.341	ENSPANG00000015005	CPSF1	100	96.341	Papio_anubis
MGP_SPRETEiJ_G0020839	Cpsf1	100	80.415	ENSPKIG00000002582	cpsf1	100	80.956	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0020839	Cpsf1	100	93.030	ENSPCIG00000009035	CPSF1	100	93.030	Phascolarctos_cinereus
MGP_SPRETEiJ_G0020839	Cpsf1	100	76.574	ENSPFOG00000012870	cpsf1	100	76.574	Poecilia_formosa
MGP_SPRETEiJ_G0020839	Cpsf1	100	76.387	ENSPREG00000016307	cpsf1	100	76.387	Poecilia_reticulata
MGP_SPRETEiJ_G0020839	Cpsf1	100	88.627	ENSPPYG00000018973	CPSF1	100	88.627	Pongo_abelii
MGP_SPRETEiJ_G0020839	Cpsf1	91	95.170	ENSPCAG00000011541	CPSF1	94	95.170	Procavia_capensis
MGP_SPRETEiJ_G0020839	Cpsf1	100	93.412	ENSPCOG00000020001	CPSF1	100	93.412	Propithecus_coquereli
MGP_SPRETEiJ_G0020839	Cpsf1	91	99.143	ENSPVAG00000006761	CPSF1	91	99.143	Pteropus_vampyrus
MGP_SPRETEiJ_G0020839	Cpsf1	100	78.947	ENSPNYG00000004906	cpsf1	100	79.084	Pundamilia_nyererei
MGP_SPRETEiJ_G0020839	Cpsf1	100	74.983	ENSPNAG00000024395	cpsf1	100	74.983	Pygocentrus_nattereri
MGP_SPRETEiJ_G0020839	Cpsf1	100	99.375	ENSRNOG00000030705	Cpsf1	100	99.375	Rattus_norvegicus
MGP_SPRETEiJ_G0020839	Cpsf1	100	96.533	ENSRBIG00000044907	CPSF1	100	96.533	Rhinopithecus_bieti
MGP_SPRETEiJ_G0020839	Cpsf1	100	96.463	ENSRROG00000044861	CPSF1	100	96.463	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0020839	Cpsf1	97	96.485	ENSSBOG00000027177	CPSF1	100	96.485	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0020839	Cpsf1	100	93.030	ENSSHAG00000006500	CPSF1	100	93.030	Sarcophilus_harrisii
MGP_SPRETEiJ_G0020839	Cpsf1	100	78.153	ENSSFOG00015004606	cpsf1	100	81.441	Scleropages_formosus
MGP_SPRETEiJ_G0020839	Cpsf1	100	78.064	ENSSMAG00000020547	cpsf1	100	78.199	Scophthalmus_maximus
MGP_SPRETEiJ_G0020839	Cpsf1	100	79.461	ENSSDUG00000001100	cpsf1	100	79.806	Seriola_dumerili
MGP_SPRETEiJ_G0020839	Cpsf1	100	79.723	ENSSLDG00000003619	cpsf1	100	79.792	Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0020839	Cpsf1	89	97.917	ENSSARG00000003643	CPSF1	92	97.917	Sorex_araneus
MGP_SPRETEiJ_G0020839	Cpsf1	96	88.104	ENSSPUG00000014396	CPSF1	100	88.104	Sphenodon_punctatus
MGP_SPRETEiJ_G0020839	Cpsf1	100	78.214	ENSSPAG00000005349	cpsf1	100	78.417	Stegastes_partitus
MGP_SPRETEiJ_G0020839	Cpsf1	100	95.637	ENSSSCG00000005906	CPSF1	100	95.637	Sus_scrofa
MGP_SPRETEiJ_G0020839	Cpsf1	96	78.237	ENSTRUG00000013134	cpsf1	99	78.376	Takifugu_rubripes
MGP_SPRETEiJ_G0020839	Cpsf1	100	78.832	ENSTNIG00000014027	cpsf1	100	78.900	Tetraodon_nigroviridis
MGP_SPRETEiJ_G0020839	Cpsf1	77	88.966	ENSTBEG00000001756	CPSF1	91	88.966	Tupaia_belangeri
MGP_SPRETEiJ_G0020839	Cpsf1	90	97.237	ENSTTRG00000001937	CPSF1	90	97.237	Tursiops_truncatus
MGP_SPRETEiJ_G0020839	Cpsf1	97	96.567	ENSUAMG00000006476	CPSF1	98	96.567	Ursus_americanus
MGP_SPRETEiJ_G0020839	Cpsf1	100	77.578	ENSXCOG00000003608	cpsf1	100	77.785	Xiphophorus_couchianus
MGP_SPRETEiJ_G0020839	Cpsf1	100	77.163	ENSXMAG00000005798	cpsf1	100	77.370	Xiphophorus_maculatus