EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0020927 (Gene tree)
Gene ID: -
Gene Symbol: Apobec3
Alias: CEM15|Gm20117|Rfv-3|Rfv3
Full Name: apolipoprotein B mRNA editing enzyme%2C catalytic polypeptide 3
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Plus strand
Length: 29041 bases
Position: chr15:79411665-79440705
Accession: 1933111
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0040810	APOBEC_N	PF08210.11	2.6e-79	1	2
MGP_SPRETEiJ_P0040810	APOBEC_N	PF08210.11	2.6e-79	2	2
MGP_SPRETEiJ_P0040807	APOBEC_N	PF08210.11	3.3e-79	1	2
MGP_SPRETEiJ_P0040807	APOBEC_N	PF08210.11	3.3e-79	2	2
MGP_SPRETEiJ_P0040811	APOBEC_N	PF08210.11	3.3e-79	1	2
MGP_SPRETEiJ_P0040811	APOBEC_N	PF08210.11	3.3e-79	2	2
MGP_SPRETEiJ_P0040813	APOBEC_N	PF08210.11	3.7e-79	1	2
MGP_SPRETEiJ_P0040813	APOBEC_N	PF08210.11	3.7e-79	2	2
MGP_SPRETEiJ_P0040805	APOBEC_N	PF08210.11	2.7e-26	1	1
MGP_SPRETEiJ_P0040804	APOBEC_N	PF08210.11	7.7e-26	1	1
MGP_SPRETEiJ_P0040814	APOBEC_N	PF08210.11	8.8e-24	1	1
MGP_SPRETEiJ_P0040810	APOBEC_C	PF05240.14	7.8e-54	1	2
MGP_SPRETEiJ_P0040810	APOBEC_C	PF05240.14	7.8e-54	2	2
MGP_SPRETEiJ_P0040807	APOBEC_C	PF05240.14	1.2e-53	1	2
MGP_SPRETEiJ_P0040807	APOBEC_C	PF05240.14	1.2e-53	2	2
MGP_SPRETEiJ_P0040811	APOBEC_C	PF05240.14	1.3e-53	1	2
MGP_SPRETEiJ_P0040811	APOBEC_C	PF05240.14	1.3e-53	2	2
MGP_SPRETEiJ_P0040813	APOBEC_C	PF05240.14	1.5e-53	1	2
MGP_SPRETEiJ_P0040813	APOBEC_C	PF05240.14	1.5e-53	2	2
MGP_SPRETEiJ_P0040804	APOBEC_C	PF05240.14	4.4e-28	1	1
MGP_SPRETEiJ_P0040805	APOBEC_C	PF05240.14	5.2e-28	1	1
MGP_SPRETEiJ_P0040814	APOBEC_C	PF05240.14	1.8e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0040816	-	2082	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0040815	-	731	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0040817	-	720	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0040809	-	1217	-	MGP_SPRETEiJ_P0040809	46 (aa)	-	-
MGP_SPRETEiJ_T0040808	-	699	-	MGP_SPRETEiJ_P0040808	79 (aa)	-	-
MGP_SPRETEiJ_T0040814	-	648	-	MGP_SPRETEiJ_P0040814	85 (aa)	-	-
MGP_SPRETEiJ_T0040812	-	2246	-	MGP_SPRETEiJ_P0040812	392 (aa)	-	-
MGP_SPRETEiJ_T0040813	-	1323	-	MGP_SPRETEiJ_P0040813	440 (aa)	-	-
MGP_SPRETEiJ_T0040810	-	1980	-	MGP_SPRETEiJ_P0040810	407 (aa)	-	-
MGP_SPRETEiJ_T0040811	-	2780	-	MGP_SPRETEiJ_P0040811	430 (aa)	-	-
MGP_SPRETEiJ_T0040805	-	817	-	MGP_SPRETEiJ_P0040805	151 (aa)	-	-
MGP_SPRETEiJ_T0040804	-	750	-	MGP_SPRETEiJ_P0040804	166 (aa)	-	-
MGP_SPRETEiJ_T0040807	-	2460	-	MGP_SPRETEiJ_P0040807	429 (aa)	-	UPI00000279C9
MGP_SPRETEiJ_T0040806	-	607	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0020927's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0020927's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_SPRETEiJ_G0020927	Apobec3	96	42.169	MGP_SPRETEiJ_G0029856	Aicda	91	39.344
MGP_SPRETEiJ_G0020927	Apobec3	84	38.028	MGP_SPRETEiJ_G0029857	Apobec1	74	34.737

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0020927	Apobec3	98	38.095	ENSG00000100298	APOBEC3H	100	47.027	Homo_sapiens
MGP_SPRETEiJ_G0020927	Apobec3	100	43.529	ENSAMEG00000010818	-	99	40.086	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0020927	Apobec3	98	39.286	ENSANAG00000025410	APOBEC3H	92	46.798	Aotus_nancymaae
MGP_SPRETEiJ_G0020927	Apobec3	98	54.217	ENSBTAG00000007755	APOBEC3H	94	46.667	Bos_taurus
MGP_SPRETEiJ_G0020927	Apobec3	98	39.286	ENSCJAG00000012524	APOBEC3H	89	48.201	Callithrix_jacchus
MGP_SPRETEiJ_G0020927	Apobec3	98	43.373	ENSCAFG00000001361	APOBEC3Z3	99	47.150	Canis_familiaris
MGP_SPRETEiJ_G0020927	Apobec3	98	42.169	ENSCAFG00020002584	-	99	46.857	Canis_lupus_dingo
MGP_SPRETEiJ_G0020927	Apobec3	98	51.807	ENSCHIG00000026580	-	97	46.594	Capra_hircus
MGP_SPRETEiJ_G0020927	Apobec3	98	42.169	ENSTSYG00000032894	-	100	50.000	Carlito_syrichta
MGP_SPRETEiJ_G0020927	Apobec3	98	44.578	ENSCPOG00000009257	-	93	45.431	Cavia_porcellus
MGP_SPRETEiJ_G0020927	Apobec3	98	39.286	ENSCCAG00000008525	APOBEC3H	95	46.078	Cebus_capucinus
MGP_SPRETEiJ_G0020927	Apobec3	98	40.476	ENSCATG00000030302	APOBEC3H	99	46.961	Cercocebus_atys
MGP_SPRETEiJ_G0020927	Apobec3	92	47.980	ENSCLAG00000016615	-	96	48.469	Chinchilla_lanigera
MGP_SPRETEiJ_G0020927	Apobec3	92	47.027	ENSCSAG00000006371	APOBEC3H	94	46.000	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0020927	Apobec3	100	67.633	ENSCGRG00001022976	Apobec3	100	67.633	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0020927	Apobec3	100	67.633	ENSCGRG00000005621	Apobec3	100	67.633	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0020927	Apobec3	100	57.647	ENSDORG00000027271	-	100	55.102	Dipodomys_ordii
MGP_SPRETEiJ_G0020927	Apobec3	98	48.901	ENSECAG00000007726	APOBEC3H	98	47.716	Equus_caballus
MGP_SPRETEiJ_G0020927	Apobec3	98	45.783	ENSFCAG00000005251	APOBEC3Z3	98	48.705	Felis_catus
MGP_SPRETEiJ_G0020927	Apobec3	89	47.283	ENSSTOG00000007125	-	85	47.283	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0020927	Apobec3	99	51.282	ENSJJAG00000016840	-	99	48.768	Jaculus_jaculus
MGP_SPRETEiJ_G0020927	Apobec3	98	44.578	ENSLAFG00000027404	-	99	42.632	Loxodonta_africana
MGP_SPRETEiJ_G0020927	Apobec3	92	47.568	ENSMFAG00000031827	APOBEC3H	94	46.500	Macaca_fascicularis
MGP_SPRETEiJ_G0020927	Apobec3	92	47.568	ENSMMUG00000001016	APOBEC3H	94	46.500	Macaca_mulatta
MGP_SPRETEiJ_G0020927	Apobec3	92	47.568	ENSMNEG00000039259	APOBEC3H	94	46.500	Macaca_nemestrina
MGP_SPRETEiJ_G0020927	Apobec3	91	47.568	ENSMLEG00000033417	APOBEC3H	94	46.500	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0020927	Apobec3	100	65.783	ENSMAUG00000011683	Apobec3	100	65.783	Mesocricetus_auratus
MGP_SPRETEiJ_G0020927	Apobec3	100	69.048	ENSMOCG00000021576	Apobec3	100	63.443	Microtus_ochrogaster
MGP_SPRETEiJ_G0020927	Apobec3	100	90.418	MGP_CAROLIEiJ_G0020029	Apobec3	100	90.572	Mus_caroli
MGP_SPRETEiJ_G0020927	Apobec3	100	96.069	ENSMUSG00000009585	Apobec3	100	96.212	Mus_musculus
MGP_SPRETEiJ_G0020927	Apobec3	100	86.076	MGP_PahariEiJ_G0020031	-	100	86.076	Mus_pahari
MGP_SPRETEiJ_G0020927	Apobec3	100	42.169	ENSMPUG00000013239	-	96	43.307	Mustela_putorius_furo
MGP_SPRETEiJ_G0020927	Apobec3	98	65.060	ENSNGAG00000018998	Apobec3	99	61.279	Nannospalax_galili
MGP_SPRETEiJ_G0020927	Apobec3	85	45.050	ENSNLEG00000015218	-	95	45.050	Nomascus_leucogenys
MGP_SPRETEiJ_G0020927	Apobec3	98	55.422	ENSOCUG00000023913	-	100	40.943	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0020927	Apobec3	98	53.012	ENSOARG00000016290	APOBEC3F	96	46.133	Ovis_aries
MGP_SPRETEiJ_G0020927	Apobec3	98	39.286	ENSPPAG00000036522	APOBEC3H	100	47.027	Pan_paniscus
MGP_SPRETEiJ_G0020927	Apobec3	98	45.783	ENSPPRG00000003941	-	98	50.259	Panthera_pardus
MGP_SPRETEiJ_G0020927	Apobec3	98	45.783	ENSPPRG00000003675	-	100	40.376	Panthera_pardus
MGP_SPRETEiJ_G0020927	Apobec3	98	45.783	ENSPTIG00000010283	-	98	50.259	Panthera_tigris_altaica
MGP_SPRETEiJ_G0020927	Apobec3	98	39.286	ENSPTRG00000014390	APOBEC3H	100	47.027	Pan_troglodytes
MGP_SPRETEiJ_G0020927	Apobec3	98	41.667	ENSPANG00000010774	APOBEC3H	95	46.535	Papio_anubis
MGP_SPRETEiJ_G0020927	Apobec3	98	72.289	ENSPEMG00000000456	Apobec3	99	63.158	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0020927	Apobec3	85	45.545	ENSPPYG00000011834	-	96	45.366	Pongo_abelii
MGP_SPRETEiJ_G0020927	Apobec3	98	40.964	ENSPCAG00000015655	-	99	39.735	Procavia_capensis
MGP_SPRETEiJ_G0020927	Apobec3	98	40.964	ENSPVAG00000009462	-	100	48.315	Pteropus_vampyrus
MGP_SPRETEiJ_G0020927	Apobec3	98	45.783	ENSPVAG00000024267	-	100	44.444	Pteropus_vampyrus
MGP_SPRETEiJ_G0020927	Apobec3	98	49.398	ENSPVAG00000024161	-	100	45.926	Pteropus_vampyrus
MGP_SPRETEiJ_G0020927	Apobec3	98	72.619	ENSRNOG00000016852	Apobec3	100	70.202	Rattus_norvegicus
MGP_SPRETEiJ_G0020927	Apobec3	98	40.476	ENSRBIG00000029088	APOBEC3H	96	46.961	Rhinopithecus_bieti
MGP_SPRETEiJ_G0020927	Apobec3	98	40.476	ENSRROG00000024699	APOBEC3H	96	47.514	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0020927	Apobec3	98	39.286	ENSSBOG00000030005	APOBEC3H	100	51.049	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0020927	Apobec3	98	46.988	ENSSSCG00000000091	APOBEC3B	98	41.190	Sus_scrofa
MGP_SPRETEiJ_G0020927	Apobec3	98	42.169	ENSTBEG00000001532	-	100	46.784	Tupaia_belangeri
MGP_SPRETEiJ_G0020927	Apobec3	98	43.373	ENSTTRG00000001266	-	99	46.369	Tursiops_truncatus
MGP_SPRETEiJ_G0020927	Apobec3	100	42.353	ENSUAMG00000004427	-	89	47.000	Ursus_americanus
MGP_SPRETEiJ_G0020927	Apobec3	92	51.031	ENSUMAG00000014435	-	99	51.031	Ursus_maritimus
MGP_SPRETEiJ_G0020927	Apobec3	98	43.373	ENSVPAG00000011108	-	98	47.581	Vicugna_pacos