EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0020941 (Gene tree)
Gene ID: -
Gene Symbol: Tnrc6b
Alias: 2700090M07Rik|A730065C02Rik|D230019K20Rik
Full Name: trinucleotide repeat containing 6b
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Plus strand
Length: 237473 bases
Position: chr15:80284158-80521630
Accession: 2443730
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0040853	Ago_hook	PF10427.9	1.6e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0040854	-	5604	-	MGP_SPRETEiJ_P0040854	1867 (aa)	-	-
MGP_SPRETEiJ_T0040853	-	17183	-	MGP_SPRETEiJ_P0040853	1810 (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0020941's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0020941's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_SPRETEiJ_G0020941	Tnrc6b	98	38.044	MGP_SPRETEiJ_G0031539	Tnrc6a	98	40.453
MGP_SPRETEiJ_G0020941	Tnrc6b	96	37.308	MGP_SPRETEiJ_G0018309	Tnrc6c	99	36.156

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0020941	Tnrc6b	98	96.189	ENSG00000100354	TNRC6B	100	96.344	Homo_sapiens
MGP_SPRETEiJ_G0020941	Tnrc6b	99	94.978	ENSAMEG00000011025	TNRC6B	100	94.816	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0020941	Tnrc6b	96	84.484	ENSAPLG00000009347	TNRC6B	100	84.598	Anas_platyrhynchos
MGP_SPRETEiJ_G0020941	Tnrc6b	97	72.891	ENSACAG00000007281	TNRC6B	99	73.397	Anolis_carolinensis
MGP_SPRETEiJ_G0020941	Tnrc6b	98	95.917	ENSANAG00000035042	TNRC6B	100	95.991	Aotus_nancymaae
MGP_SPRETEiJ_G0020941	Tnrc6b	51	47.760	ENSAMXG00000008707	tnrc6b	97	44.898	Astyanax_mexicanus
MGP_SPRETEiJ_G0020941	Tnrc6b	98	93.961	ENSBTAG00000021076	TNRC6B	99	94.147	Bos_taurus
MGP_SPRETEiJ_G0020941	Tnrc6b	97	95.457	ENSCJAG00000002732	TNRC6B	99	97.746	Callithrix_jacchus
MGP_SPRETEiJ_G0020941	Tnrc6b	97	95.027	ENSCAFG00000001255	TNRC6B	99	94.973	Canis_familiaris
MGP_SPRETEiJ_G0020941	Tnrc6b	99	94.833	ENSCAFG00020002189	TNRC6B	99	94.819	Canis_lupus_dingo
MGP_SPRETEiJ_G0020941	Tnrc6b	99	93.987	ENSCHIG00000003491	TNRC6B	100	94.154	Capra_hircus
MGP_SPRETEiJ_G0020941	Tnrc6b	97	94.910	ENSTSYG00000011836	TNRC6B	100	94.458	Carlito_syrichta
MGP_SPRETEiJ_G0020941	Tnrc6b	100	95.537	ENSCPOG00000005705	TNRC6B	100	95.592	Cavia_porcellus
MGP_SPRETEiJ_G0020941	Tnrc6b	97	94.143	ENSCCAG00000019912	TNRC6B	100	93.160	Cebus_capucinus
MGP_SPRETEiJ_G0020941	Tnrc6b	97	94.912	ENSCATG00000029291	TNRC6B	100	94.700	Cercocebus_atys
MGP_SPRETEiJ_G0020941	Tnrc6b	100	95.698	ENSCLAG00000016942	TNRC6B	100	95.698	Chinchilla_lanigera
MGP_SPRETEiJ_G0020941	Tnrc6b	97	91.417	ENSCSAG00000006021	TNRC6B	99	91.361	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0020941	Tnrc6b	90	85.441	ENSCPBG00000022932	TNRC6B	99	85.731	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0020941	Tnrc6b	97	95.350	ENSCANG00000030776	TNRC6B	100	95.642	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0020941	Tnrc6b	96	97.650	ENSCGRG00001020166	Tnrc6b	99	97.650	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0020941	Tnrc6b	100	97.682	ENSCGRG00000016696	Tnrc6b	99	97.690	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0020941	Tnrc6b	100	94.389	ENSDNOG00000012744	TNRC6B	100	94.543	Dasypus_novemcinctus
MGP_SPRETEiJ_G0020941	Tnrc6b	100	96.194	ENSDORG00000003386	Tnrc6b	100	96.194	Dipodomys_ordii
MGP_SPRETEiJ_G0020941	Tnrc6b	97	83.663	ENSETEG00000006570	TNRC6B	99	84.228	Echinops_telfairi
MGP_SPRETEiJ_G0020941	Tnrc6b	99	95.310	ENSEASG00005005306	TNRC6B	99	95.095	Equus_asinus_asinus
MGP_SPRETEiJ_G0020941	Tnrc6b	100	95.891	ENSECAG00000009759	TNRC6B	99	97.000	Equus_caballus
MGP_SPRETEiJ_G0020941	Tnrc6b	55	95.676	ENSEEUG00000008690	-	59	95.604	Erinaceus_europaeus
MGP_SPRETEiJ_G0020941	Tnrc6b	100	95.101	ENSFCAG00000004791	TNRC6B	100	94.835	Felis_catus
MGP_SPRETEiJ_G0020941	Tnrc6b	93	87.272	ENSFALG00000012195	TNRC6B	100	87.448	Ficedula_albicollis
MGP_SPRETEiJ_G0020941	Tnrc6b	100	96.413	ENSFDAG00000021368	TNRC6B	100	96.413	Fukomys_damarensis
MGP_SPRETEiJ_G0020941	Tnrc6b	97	88.305	ENSGALG00000012050	TNRC6B	97	88.249	Gallus_gallus
MGP_SPRETEiJ_G0020941	Tnrc6b	97	87.445	ENSGAGG00000025188	TNRC6B	98	87.500	Gopherus_agassizii
MGP_SPRETEiJ_G0020941	Tnrc6b	98	96.026	ENSGGOG00000008444	TNRC6B	100	96.108	Gorilla_gorilla
MGP_SPRETEiJ_G0020941	Tnrc6b	100	95.518	ENSHGLG00000009306	TNRC6B	100	95.056	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0020941	Tnrc6b	100	95.309	ENSHGLG00100018108	TNRC6B	100	95.143	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0020941	Tnrc6b	80	45.179	ENSIPUG00000001515	tnrc6b	80	50.763	Ictalurus_punctatus
MGP_SPRETEiJ_G0020941	Tnrc6b	100	96.139	ENSSTOG00000008927	TNRC6B	100	96.139	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0020941	Tnrc6b	100	96.022	ENSJJAG00000015779	Tnrc6b	100	96.022	Jaculus_jaculus
MGP_SPRETEiJ_G0020941	Tnrc6b	98	61.842	ENSLACG00000000628	-	99	62.479	Latimeria_chalumnae
MGP_SPRETEiJ_G0020941	Tnrc6b	77	94.294	ENSLAFG00000014473	TNRC6B	100	94.363	Loxodonta_africana
MGP_SPRETEiJ_G0020941	Tnrc6b	97	95.022	ENSMFAG00000003862	TNRC6B	100	94.817	Macaca_fascicularis
MGP_SPRETEiJ_G0020941	Tnrc6b	100	95.270	ENSMMUG00000021345	TNRC6B	100	95.878	Macaca_mulatta
MGP_SPRETEiJ_G0020941	Tnrc6b	97	95.271	ENSMNEG00000042745	TNRC6B	99	95.100	Macaca_nemestrina
MGP_SPRETEiJ_G0020941	Tnrc6b	98	95.919	ENSMLEG00000041780	TNRC6B	100	95.878	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0020941	Tnrc6b	98	88.194	ENSMGAG00000012333	TNRC6B	99	87.972	Meleagris_gallopavo
MGP_SPRETEiJ_G0020941	Tnrc6b	100	96.797	ENSMAUG00000016123	Tnrc6b	100	96.797	Mesocricetus_auratus
MGP_SPRETEiJ_G0020941	Tnrc6b	98	95.863	ENSMICG00000014056	TNRC6B	100	95.893	Microcebus_murinus
MGP_SPRETEiJ_G0020941	Tnrc6b	97	98.500	ENSMOCG00000020334	Tnrc6b	100	98.500	Microtus_ochrogaster
MGP_SPRETEiJ_G0020941	Tnrc6b	100	99.613	MGP_CAROLIEiJ_G0020043	Tnrc6b	100	99.613	Mus_caroli
MGP_SPRETEiJ_G0020941	Tnrc6b	100	99.779	ENSMUSG00000047888	Tnrc6b	100	99.779	Mus_musculus
MGP_SPRETEiJ_G0020941	Tnrc6b	100	99.227	MGP_PahariEiJ_G0020045	Tnrc6b	100	99.227	Mus_pahari
MGP_SPRETEiJ_G0020941	Tnrc6b	95	96.952	ENSMPUG00000016442	TNRC6B	99	88.324	Mustela_putorius_furo
MGP_SPRETEiJ_G0020941	Tnrc6b	97	94.685	ENSMLUG00000008765	TNRC6B	99	94.521	Myotis_lucifugus
MGP_SPRETEiJ_G0020941	Tnrc6b	100	96.035	ENSNGAG00000021294	Tnrc6b	100	96.035	Nannospalax_galili
MGP_SPRETEiJ_G0020941	Tnrc6b	87	96.197	ENSNLEG00000015311	TNRC6B	100	96.344	Nomascus_leucogenys
MGP_SPRETEiJ_G0020941	Tnrc6b	91	85.569	ENSOPRG00000012054	TNRC6B	88	91.304	Ochotona_princeps
MGP_SPRETEiJ_G0020941	Tnrc6b	100	96.307	ENSODEG00000013146	TNRC6B	100	96.307	Octodon_degus
MGP_SPRETEiJ_G0020941	Tnrc6b	92	44.038	ENSONIG00000019679	-	99	41.807	Oreochromis_niloticus
MGP_SPRETEiJ_G0020941	Tnrc6b	100	94.386	ENSOCUG00000016128	TNRC6B	100	94.221	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0020941	Tnrc6b	97	95.295	ENSOGAG00000011096	TNRC6B	99	95.131	Otolemur_garnettii
MGP_SPRETEiJ_G0020941	Tnrc6b	100	93.921	ENSOARG00000017238	TNRC6B	100	93.702	Ovis_aries
MGP_SPRETEiJ_G0020941	Tnrc6b	98	96.081	ENSPPAG00000028514	TNRC6B	100	95.750	Pan_paniscus
MGP_SPRETEiJ_G0020941	Tnrc6b	97	95.074	ENSPPRG00000017741	TNRC6B	100	95.059	Panthera_pardus
MGP_SPRETEiJ_G0020941	Tnrc6b	97	90.284	ENSPTIG00000022064	TNRC6B	98	91.667	Panthera_tigris_altaica
MGP_SPRETEiJ_G0020941	Tnrc6b	98	95.972	ENSPTRG00000047826	TNRC6B	100	96.108	Pan_troglodytes
MGP_SPRETEiJ_G0020941	Tnrc6b	96	88.013	ENSPANG00000009271	TNRC6B	99	91.200	Papio_anubis
MGP_SPRETEiJ_G0020941	Tnrc6b	97	87.091	ENSPSIG00000005318	TNRC6B	99	87.204	Pelodiscus_sinensis
MGP_SPRETEiJ_G0020941	Tnrc6b	100	97.739	ENSPEMG00000011403	Tnrc6b	100	97.739	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0020941	Tnrc6b	97	86.359	ENSPCIG00000020347	TNRC6B	99	86.469	Phascolarctos_cinereus
MGP_SPRETEiJ_G0020941	Tnrc6b	68	48.970	ENSPFOG00000006033	-	95	43.759	Poecilia_formosa
MGP_SPRETEiJ_G0020941	Tnrc6b	66	44.739	ENSPLAG00000001418	-	50	49.644	Poecilia_latipinna
MGP_SPRETEiJ_G0020941	Tnrc6b	76	53.317	ENSPMEG00000006371	-	68	54.265	Poecilia_mexicana
MGP_SPRETEiJ_G0020941	Tnrc6b	97	92.147	ENSPPYG00000011849	TNRC6B	100	92.637	Pongo_abelii
MGP_SPRETEiJ_G0020941	Tnrc6b	78	87.729	ENSPCAG00000008739	TNRC6B	77	88.376	Procavia_capensis
MGP_SPRETEiJ_G0020941	Tnrc6b	98	96.026	ENSPCOG00000020790	TNRC6B	100	96.108	Propithecus_coquereli
MGP_SPRETEiJ_G0020941	Tnrc6b	93	94.397	ENSPVAG00000004975	TNRC6B	94	94.397	Pteropus_vampyrus
MGP_SPRETEiJ_G0020941	Tnrc6b	63	48.767	ENSPNAG00000011713	tnrc6b	78	44.938	Pygocentrus_nattereri
MGP_SPRETEiJ_G0020941	Tnrc6b	100	98.243	ENSRNOG00000024907	Tnrc6b	100	98.243	Rattus_norvegicus
MGP_SPRETEiJ_G0020941	Tnrc6b	97	95.350	ENSRBIG00000035576	TNRC6B	99	95.760	Rhinopithecus_bieti
MGP_SPRETEiJ_G0020941	Tnrc6b	97	95.350	ENSRROG00000031135	TNRC6B	100	95.760	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0020941	Tnrc6b	97	94.566	ENSSBOG00000029743	TNRC6B	99	94.566	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0020941	Tnrc6b	97	86.532	ENSSHAG00000009692	TNRC6B	99	86.532	Sarcophilus_harrisii
MGP_SPRETEiJ_G0020941	Tnrc6b	66	84.746	ENSSARG00000007971	-	70	86.364	Sorex_araneus
MGP_SPRETEiJ_G0020941	Tnrc6b	90	86.706	ENSSPUG00000010801	TNRC6B	100	86.766	Sphenodon_punctatus
MGP_SPRETEiJ_G0020941	Tnrc6b	100	94.717	ENSSSCG00000000078	TNRC6B	99	96.179	Sus_scrofa
MGP_SPRETEiJ_G0020941	Tnrc6b	91	78.996	ENSTGUG00000010138	-	99	82.498	Taeniopygia_guttata
MGP_SPRETEiJ_G0020941	Tnrc6b	95	96.506	ENSTTRG00000011465	TNRC6B	98	96.007	Tursiops_truncatus
MGP_SPRETEiJ_G0020941	Tnrc6b	100	93.161	ENSUAMG00000007174	TNRC6B	99	93.645	Ursus_americanus
MGP_SPRETEiJ_G0020941	Tnrc6b	97	94.812	ENSUMAG00000014336	TNRC6B	100	94.454	Ursus_maritimus
MGP_SPRETEiJ_G0020941	Tnrc6b	70	89.516	ENSVPAG00000001467	TNRC6B	75	88.306	Vicugna_pacos
MGP_SPRETEiJ_G0020941	Tnrc6b	100	95.147	ENSVVUG00000007064	TNRC6B	100	96.186	Vulpes_vulpes