EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0021321 (Gene tree)
Gene ID: -
Gene Symbol: Rbfox1
Alias: A2bp|A2bp1|FOX1|HRNBP1
Full Name: RNA binding protein%2C fox-1 homolog (C. elegans) 1
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Plus strand
Length: 626436 bases
Position: chr16:3455679-4082114
Accession: 1926224
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0042117	Fox-1_C	PF12414.8	2e-42	1	1
MGP_SPRETEiJ_P0042118	Fox-1_C	PF12414.8	2.3e-40	1	1
MGP_SPRETEiJ_P0042118	RRM_1	PF00076.22	5.5e-18	1	1
MGP_SPRETEiJ_P0042117	RRM_1	PF00076.22	5.7e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0042117	-	1191	-	MGP_SPRETEiJ_P0042117	396 (aa)	-	-
MGP_SPRETEiJ_T0042119	-	5190	-	MGP_SPRETEiJ_P0042119	424 (aa)	-	-
MGP_SPRETEiJ_T0042118	-	4089	-	MGP_SPRETEiJ_P0042118	417 (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0021321's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0021321's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_SPRETEiJ_G0021321	Rbfox1	100	62.287	MGP_SPRETEiJ_G0020860	Rbfox2	100	62.044
MGP_SPRETEiJ_G0021321	Rbfox1	91	64.578	MGP_SPRETEiJ_G0018331	Rbfox3	100	71.345

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0021321	Rbfox1	100	97.985	ENSG00000078328	RBFOX1	100	97.985	Homo_sapiens
MGP_SPRETEiJ_G0021321	Rbfox1	100	76.145	ENSAPOG00000003197	rbfox1	100	75.904	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0021321	Rbfox1	60	93.600	ENSAMEG00000008605	RBFOX1	100	93.600	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0021321	Rbfox1	67	64.527	ENSACIG00000005478	rbfox1	68	64.983	Amphilophus_citrinellus
MGP_SPRETEiJ_G0021321	Rbfox1	73	70.033	ENSAOCG00000008283	rbfox1	99	69.401	Amphiprion_ocellaris
MGP_SPRETEiJ_G0021321	Rbfox1	95	70.899	ENSAPEG00000010636	rbfox1	100	70.789	Amphiprion_percula
MGP_SPRETEiJ_G0021321	Rbfox1	73	68.608	ENSATEG00000007513	rbfox1	99	68.025	Anabas_testudineus
MGP_SPRETEiJ_G0021321	Rbfox1	98	93.316	ENSAPLG00000013263	RBFOX1	97	93.316	Anas_platyrhynchos
MGP_SPRETEiJ_G0021321	Rbfox1	99	86.216	ENSACAG00000004013	RBFOX1	100	86.216	Anolis_carolinensis
MGP_SPRETEiJ_G0021321	Rbfox1	100	93.764	ENSANAG00000029527	RBFOX1	98	96.939	Aotus_nancymaae
MGP_SPRETEiJ_G0021321	Rbfox1	56	86.937	ENSAMXG00000002431	rbfox1	65	87.054	Astyanax_mexicanus
MGP_SPRETEiJ_G0021321	Rbfox1	99	94.162	ENSBTAG00000007210	RBFOX1	100	96.011	Bos_taurus
MGP_SPRETEiJ_G0021321	Rbfox1	100	96.890	ENSCJAG00000017351	RBFOX1	100	96.890	Callithrix_jacchus
MGP_SPRETEiJ_G0021321	Rbfox1	100	97.368	ENSCAFG00000019082	RBFOX1	100	97.368	Canis_familiaris
MGP_SPRETEiJ_G0021321	Rbfox1	86	82.289	ENSCAFG00020024881	RBFOX1	83	96.622	Canis_lupus_dingo
MGP_SPRETEiJ_G0021321	Rbfox1	99	94.162	ENSCHIG00000023549	RBFOX1	100	96.011	Capra_hircus
MGP_SPRETEiJ_G0021321	Rbfox1	97	96.377	ENSTSYG00000005334	RBFOX1	100	97.172	Carlito_syrichta
MGP_SPRETEiJ_G0021321	Rbfox1	100	96.411	ENSCAPG00000017669	RBFOX1	100	96.907	Cavia_aperea
MGP_SPRETEiJ_G0021321	Rbfox1	100	96.977	ENSCPOG00000011314	RBFOX1	100	96.977	Cavia_porcellus
MGP_SPRETEiJ_G0021321	Rbfox1	100	96.890	ENSCCAG00000023031	RBFOX1	100	96.890	Cebus_capucinus
MGP_SPRETEiJ_G0021321	Rbfox1	100	97.368	ENSCATG00000033816	RBFOX1	100	97.368	Cercocebus_atys
MGP_SPRETEiJ_G0021321	Rbfox1	100	96.977	ENSCLAG00000012761	RBFOX1	100	96.977	Chinchilla_lanigera
MGP_SPRETEiJ_G0021321	Rbfox1	88	96.809	ENSCSAG00000008739	RBFOX1	100	96.809	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0021321	Rbfox1	100	75.359	ENSCHOG00000012843	RBFOX1	100	75.359	Choloepus_hoffmanni
MGP_SPRETEiJ_G0021321	Rbfox1	98	93.557	ENSCPBG00000026626	RBFOX1	100	92.021	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0021321	Rbfox1	100	97.368	ENSCANG00000033125	RBFOX1	100	97.368	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0021321	Rbfox1	100	99.281	ENSCGRG00001013729	Rbfox1	100	99.281	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0021321	Rbfox1	100	99.281	ENSCGRG00000003272	Rbfox1	100	99.281	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0021321	Rbfox1	95	71.033	ENSCSEG00000008840	rbfox1	100	71.033	Cynoglossus_semilaevis
MGP_SPRETEiJ_G0021321	Rbfox1	100	80.151	ENSDARG00000014746	rbfox1	100	85.366	Danio_rerio
MGP_SPRETEiJ_G0021321	Rbfox1	98	96.923	ENSDNOG00000043612	RBFOX1	94	96.923	Dasypus_novemcinctus
MGP_SPRETEiJ_G0021321	Rbfox1	100	92.804	ENSDORG00000010024	Rbfox1	100	92.804	Dipodomys_ordii
MGP_SPRETEiJ_G0021321	Rbfox1	100	78.417	ENSETEG00000003771	RBFOX1	100	78.417	Echinops_telfairi
MGP_SPRETEiJ_G0021321	Rbfox1	98	97.686	ENSEASG00005011599	RBFOX1	98	97.449	Equus_asinus_asinus
MGP_SPRETEiJ_G0021321	Rbfox1	97	97.037	ENSECAG00000012667	RBFOX1	100	96.277	Equus_caballus
MGP_SPRETEiJ_G0021321	Rbfox1	84	66.390	ENSELUG00000013096	rbfox1	100	51.768	Esox_lucius
MGP_SPRETEiJ_G0021321	Rbfox1	98	97.686	ENSFCAG00000025322	RBFOX1	100	96.809	Felis_catus
MGP_SPRETEiJ_G0021321	Rbfox1	83	90.991	ENSFALG00000004027	RBFOX1	100	90.991	Ficedula_albicollis
MGP_SPRETEiJ_G0021321	Rbfox1	100	97.481	ENSFDAG00000007388	RBFOX1	100	97.481	Fukomys_damarensis
MGP_SPRETEiJ_G0021321	Rbfox1	100	92.105	ENSGALG00000034325	RBFOX1	100	92.105	Gallus_gallus
MGP_SPRETEiJ_G0021321	Rbfox1	100	91.388	ENSGAGG00000023681	RBFOX1	100	93.634	Gopherus_agassizii
MGP_SPRETEiJ_G0021321	Rbfox1	100	97.368	ENSGGOG00000016871	-	100	97.368	Gorilla_gorilla
MGP_SPRETEiJ_G0021321	Rbfox1	100	97.229	ENSHGLG00000016944	RBFOX1	100	97.229	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0021321	Rbfox1	100	97.229	ENSHGLG00100003272	RBFOX1	100	97.229	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0021321	Rbfox1	85	70.893	ENSHCOG00000016419	rbfox1	91	70.977	Hippocampus_comes
MGP_SPRETEiJ_G0021321	Rbfox1	95	82.713	ENSIPUG00000015215	rbfox1	100	82.713	Ictalurus_punctatus
MGP_SPRETEiJ_G0021321	Rbfox1	100	97.229	ENSSTOG00000000322	RBFOX1	100	97.229	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0021321	Rbfox1	100	94.245	ENSJJAG00000002575	Rbfox1	100	94.245	Jaculus_jaculus
MGP_SPRETEiJ_G0021321	Rbfox1	99	72.705	ENSLBEG00000014659	rbfox1	99	72.208	Labrus_bergylta
MGP_SPRETEiJ_G0021321	Rbfox1	98	85.751	ENSLOCG00000006675	rbfox1	99	85.751	Lepisosteus_oculatus
MGP_SPRETEiJ_G0021321	Rbfox1	78	98.052	ENSLAFG00000011480	RBFOX1	100	98.377	Loxodonta_africana
MGP_SPRETEiJ_G0021321	Rbfox1	100	97.129	ENSMFAG00000036447	RBFOX1	100	97.129	Macaca_fascicularis
MGP_SPRETEiJ_G0021321	Rbfox1	100	97.129	ENSMMUG00000003458	RBFOX1	100	97.297	Macaca_mulatta
MGP_SPRETEiJ_G0021321	Rbfox1	100	97.129	ENSMNEG00000032034	RBFOX1	100	97.129	Macaca_nemestrina
MGP_SPRETEiJ_G0021321	Rbfox1	100	97.368	ENSMLEG00000015382	RBFOX1	100	97.368	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0021321	Rbfox1	95	74.490	ENSMAMG00000003142	rbfox1	100	75.000	Mastacembelus_armatus
MGP_SPRETEiJ_G0021321	Rbfox1	71	87.544	ENSMGAG00000008606	RBFOX1	98	86.364	Meleagris_gallopavo
MGP_SPRETEiJ_G0021321	Rbfox1	99	58.734	ENSMAUG00000020570	Rbfox1	99	57.722	Mesocricetus_auratus
MGP_SPRETEiJ_G0021321	Rbfox1	100	93.533	ENSMICG00000034286	RBFOX1	100	94.164	Microcebus_murinus
MGP_SPRETEiJ_G0021321	Rbfox1	100	99.281	ENSMOCG00000020932	Rbfox1	100	99.281	Microtus_ochrogaster
MGP_SPRETEiJ_G0021321	Rbfox1	86	70.435	ENSMMOG00000009716	rbfox1	100	59.850	Mola_mola
MGP_SPRETEiJ_G0021321	Rbfox1	83	96.045	ENSMODG00000005826	RBFOX1	100	96.045	Monodelphis_domestica
MGP_SPRETEiJ_G0021321	Rbfox1	100	75.550	ENSMALG00000003337	rbfox1	100	75.550	Monopterus_albus
MGP_SPRETEiJ_G0021321	Rbfox1	100	99.528	MGP_CAROLIEiJ_G0020427	Rbfox1	100	99.528	Mus_caroli
MGP_SPRETEiJ_G0021321	Rbfox1	100	99.760	ENSMUSG00000008658	Rbfox1	100	100.000	Mus_musculus
MGP_SPRETEiJ_G0021321	Rbfox1	100	99.520	MGP_PahariEiJ_G0016135	Rbfox1	100	99.520	Mus_pahari
MGP_SPRETEiJ_G0021321	Rbfox1	86	97.268	ENSMPUG00000014822	RBFOX1	93	97.268	Mustela_putorius_furo
MGP_SPRETEiJ_G0021321	Rbfox1	78	98.697	ENSMLUG00000015896	RBFOX1	100	98.697	Myotis_lucifugus
MGP_SPRETEiJ_G0021321	Rbfox1	100	98.086	ENSNGAG00000023276	Rbfox1	100	98.086	Nannospalax_galili
MGP_SPRETEiJ_G0021321	Rbfox1	98	60.000	ENSNBRG00000011084	rbfox1	98	58.837	Neolamprologus_brichardi
MGP_SPRETEiJ_G0021321	Rbfox1	100	97.129	ENSNLEG00000010017	-	100	97.129	Nomascus_leucogenys
MGP_SPRETEiJ_G0021321	Rbfox1	100	79.665	ENSMEUG00000012525	RBFOX1	100	79.665	Notamacropus_eugenii
MGP_SPRETEiJ_G0021321	Rbfox1	100	78.947	ENSOPRG00000006199	-	100	77.751	Ochotona_princeps
MGP_SPRETEiJ_G0021321	Rbfox1	100	96.474	ENSODEG00000013166	RBFOX1	100	96.474	Octodon_degus
MGP_SPRETEiJ_G0021321	Rbfox1	88	93.883	ENSOANG00000002379	RBFOX1	100	93.883	Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0021321	Rbfox1	57	92.000	ENSOCUG00000001205	-	100	92.000	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0021321	Rbfox1	100	95.970	ENSOGAG00000025535	RBFOX1	100	95.970	Otolemur_garnettii
MGP_SPRETEiJ_G0021321	Rbfox1	63	83.534	ENSOARG00000005135	RBFOX1	100	82.800	Ovis_aries
MGP_SPRETEiJ_G0021321	Rbfox1	98	97.938	ENSPPAG00000036238	-	100	97.938	Pan_paniscus
MGP_SPRETEiJ_G0021321	Rbfox1	100	97.368	ENSPPRG00000006546	RBFOX1	100	97.368	Panthera_pardus
MGP_SPRETEiJ_G0021321	Rbfox1	100	85.390	ENSPTIG00000021154	RBFOX1	99	85.604	Panthera_tigris_altaica
MGP_SPRETEiJ_G0021321	Rbfox1	100	97.368	ENSPTRG00000007744	RBFOX1	100	97.368	Pan_troglodytes
MGP_SPRETEiJ_G0021321	Rbfox1	100	97.368	ENSPANG00000026500	RBFOX1	100	97.368	Papio_anubis
MGP_SPRETEiJ_G0021321	Rbfox1	73	83.103	ENSPKIG00000019353	rbfox1	88	82.392	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0021321	Rbfox1	100	81.454	ENSPKIG00000009667	-	99	81.402	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0021321	Rbfox1	99	92.621	ENSPSIG00000006523	RBFOX1	98	92.621	Pelodiscus_sinensis
MGP_SPRETEiJ_G0021321	Rbfox1	100	99.520	ENSPEMG00000017607	Rbfox1	100	99.520	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0021321	Rbfox1	73	91.724	ENSPCIG00000026887	RBFOX1	100	91.724	Phascolarctos_cinereus
MGP_SPRETEiJ_G0021321	Rbfox1	86	97.814	ENSPPYG00000007079	-	93	97.814	Pongo_abelii
MGP_SPRETEiJ_G0021321	Rbfox1	90	88.889	ENSPCAG00000002630	RBFOX1	100	88.889	Procavia_capensis
MGP_SPRETEiJ_G0021321	Rbfox1	100	96.890	ENSPCOG00000025687	RBFOX1	100	96.890	Propithecus_coquereli
MGP_SPRETEiJ_G0021321	Rbfox1	100	92.823	ENSPVAG00000013467	RBFOX1	100	92.823	Pteropus_vampyrus
MGP_SPRETEiJ_G0021321	Rbfox1	95	80.808	ENSPNAG00000023109	rbfox1	100	80.808	Pygocentrus_nattereri
MGP_SPRETEiJ_G0021321	Rbfox1	100	96.882	ENSRNOG00000002827	Rbfox1	100	97.074	Rattus_norvegicus
MGP_SPRETEiJ_G0021321	Rbfox1	98	97.938	ENSRBIG00000044478	RBFOX1	100	97.938	Rhinopithecus_bieti
MGP_SPRETEiJ_G0021321	Rbfox1	100	97.368	ENSRROG00000044411	RBFOX1	100	97.368	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0021321	Rbfox1	99	96.438	ENSSBOG00000033726	RBFOX1	98	96.438	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0021321	Rbfox1	100	91.688	ENSSHAG00000009257	RBFOX1	100	91.688	Sarcophilus_harrisii
MGP_SPRETEiJ_G0021321	Rbfox1	88	70.225	ENSSFOG00015009955	-	87	67.819	Scleropages_formosus
MGP_SPRETEiJ_G0021321	Rbfox1	98	67.430	ENSSFOG00015023675	rbfox1	93	87.778	Scleropages_formosus
MGP_SPRETEiJ_G0021321	Rbfox1	98	76.355	ENSSMAG00000015505	rbfox1	96	72.577	Scophthalmus_maximus
MGP_SPRETEiJ_G0021321	Rbfox1	98	73.980	ENSSDUG00000016413	rbfox1	99	73.724	Seriola_dumerili
MGP_SPRETEiJ_G0021321	Rbfox1	85	71.765	ENSSLDG00000009353	rbfox1	97	71.429	Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0021321	Rbfox1	85	82.059	ENSSPUG00000009732	RBFOX1	99	70.942	Sphenodon_punctatus
MGP_SPRETEiJ_G0021321	Rbfox1	98	75.616	ENSSPAG00000009723	rbfox1	100	75.369	Stegastes_partitus
MGP_SPRETEiJ_G0021321	Rbfox1	97	96.543	ENSSSCG00000007917	RBFOX1	100	96.893	Sus_scrofa
MGP_SPRETEiJ_G0021321	Rbfox1	98	93.316	ENSTGUG00000004562	RBFOX1	100	93.316	Taeniopygia_guttata
MGP_SPRETEiJ_G0021321	Rbfox1	98	75.123	ENSTRUG00000020940	rbfox1	99	75.123	Takifugu_rubripes
MGP_SPRETEiJ_G0021321	Rbfox1	67	57.006	ENSTNIG00000002567	rbfox1	100	58.599	Tetraodon_nigroviridis
MGP_SPRETEiJ_G0021321	Rbfox1	81	86.207	ENSTBEG00000009169	-	81	86.207	Tupaia_belangeri
MGP_SPRETEiJ_G0021321	Rbfox1	100	96.651	ENSTTRG00000005700	RBFOX1	100	96.651	Tursiops_truncatus
MGP_SPRETEiJ_G0021321	Rbfox1	100	91.184	ENSUAMG00000024633	RBFOX1	100	91.184	Ursus_americanus
MGP_SPRETEiJ_G0021321	Rbfox1	100	82.368	ENSUMAG00000003579	RBFOX1	100	82.368	Ursus_maritimus
MGP_SPRETEiJ_G0021321	Rbfox1	81	98.377	ENSVPAG00000001284	RBFOX1	81	98.377	Vicugna_pacos
MGP_SPRETEiJ_G0021321	Rbfox1	98	97.429	ENSVVUG00000017311	RBFOX1	100	96.543	Vulpes_vulpes