EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0021361 (Gene tree)
Gene ID: -
Gene Symbol: Parn
Alias: 1200003I18Rik|DAN
Full Name: poly(A)-specific ribonuclease (deadenylation nuclease)
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Minus strand
Length: 135086 bases
Position: chr16:10328124-10463209
Accession: 1921358
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0042277	R3H	PF01424.22	5.2e-07	1	1
MGP_SPRETEiJ_P0042277	RNA_bind	PF08675.11	2.8e-33	1	1
MGP_SPRETEiJ_P0042277	CAF1	PF04857.20	1.7e-86	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0042277	-	2889	-	MGP_SPRETEiJ_P0042277	624 (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0021361's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0021361's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0021361	Parn	100	86.541	ENSG00000140694	PARN	100	94.915	Homo_sapiens
MGP_SPRETEiJ_G0021361	Parn	100	85.759	ENSAMEG00000011208	PARN	100	85.759	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0021361	Parn	89	71.150	ENSACIG00000000619	parn	86	71.150	Amphilophus_citrinellus
MGP_SPRETEiJ_G0021361	Parn	89	72.504	ENSAOCG00000003465	parn	81	72.504	Amphiprion_ocellaris
MGP_SPRETEiJ_G0021361	Parn	78	73.333	ENSAPEG00000010661	parn	95	73.333	Amphiprion_percula
MGP_SPRETEiJ_G0021361	Parn	99	67.180	ENSATEG00000004661	parn	82	73.345	Anabas_testudineus
MGP_SPRETEiJ_G0021361	Parn	99	79.463	ENSAPLG00000013914	PARN	99	79.463	Anas_platyrhynchos
MGP_SPRETEiJ_G0021361	Parn	100	75.535	ENSACAG00000004973	PARN	100	75.535	Anolis_carolinensis
MGP_SPRETEiJ_G0021361	Parn	100	85.446	ENSANAG00000031516	PARN	100	94.915	Aotus_nancymaae
MGP_SPRETEiJ_G0021361	Parn	92	72.137	ENSACLG00000004742	parn	84	72.260	Astatotilapia_calliptera
MGP_SPRETEiJ_G0021361	Parn	89	72.340	ENSAMXG00000012390	parn	87	74.011	Astyanax_mexicanus
MGP_SPRETEiJ_G0021361	Parn	100	83.229	ENSBTAG00000018097	PARN	100	84.922	Bos_taurus
MGP_SPRETEiJ_G0021361	Parn	100	85.915	ENSCJAG00000015866	PARN	100	94.915	Callithrix_jacchus
MGP_SPRETEiJ_G0021361	Parn	100	84.796	ENSCAFG00000018795	PARN	100	84.796	Canis_familiaris
MGP_SPRETEiJ_G0021361	Parn	100	85.110	ENSCAFG00020024126	PARN	100	85.110	Canis_lupus_dingo
MGP_SPRETEiJ_G0021361	Parn	100	85.893	ENSCHIG00000018143	PARN	100	85.893	Capra_hircus
MGP_SPRETEiJ_G0021361	Parn	74	59.875	ENSCAPG00000007984	PARN	78	59.875	Cavia_aperea
MGP_SPRETEiJ_G0021361	Parn	100	84.013	ENSCPOG00000002263	PARN	100	84.013	Cavia_porcellus
MGP_SPRETEiJ_G0021361	Parn	100	85.915	ENSCCAG00000030367	PARN	100	94.915	Cebus_capucinus
MGP_SPRETEiJ_G0021361	Parn	100	80.222	ENSCATG00000041368	PARN	100	94.915	Cercocebus_atys
MGP_SPRETEiJ_G0021361	Parn	100	84.169	ENSCLAG00000015406	PARN	99	84.169	Chinchilla_lanigera
MGP_SPRETEiJ_G0021361	Parn	100	86.698	ENSCSAG00000008142	PARN	100	86.698	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0021361	Parn	99	69.255	ENSCHOG00000007014	PARN	100	69.255	Choloepus_hoffmanni
MGP_SPRETEiJ_G0021361	Parn	85	81.618	ENSCPBG00000006609	PARN	94	81.923	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0021361	Parn	81	44.007	ENSCING00000010142	-	99	43.715	Ciona_intestinalis
MGP_SPRETEiJ_G0021361	Parn	100	75.878	ENSCANG00000028849	-	100	94.915	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0021361	Parn	100	92.480	ENSCGRG00001012096	Parn	100	92.480	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0021361	Parn	100	92.480	ENSCGRG00000004939	Parn	100	92.480	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0021361	Parn	89	70.442	ENSCSEG00000002064	parn	100	59.729	Cynoglossus_semilaevis
MGP_SPRETEiJ_G0021361	Parn	89	72.711	ENSCVAG00000014848	parn	82	72.711	Cyprinodon_variegatus
MGP_SPRETEiJ_G0021361	Parn	100	62.577	ENSDARG00000102634	parn	100	60.185	Danio_rerio
MGP_SPRETEiJ_G0021361	Parn	100	85.893	ENSDNOG00000000833	PARN	98	88.489	Dasypus_novemcinctus
MGP_SPRETEiJ_G0021361	Parn	74	84.791	ENSETEG00000014828	-	69	84.791	Echinops_telfairi
MGP_SPRETEiJ_G0021361	Parn	55	51.603	ENSEBUG00000007052	PARN	70	69.643	Eptatretus_burgeri
MGP_SPRETEiJ_G0021361	Parn	100	86.677	ENSEASG00005011400	PARN	100	86.677	Equus_asinus_asinus
MGP_SPRETEiJ_G0021361	Parn	100	86.834	ENSECAG00000017792	PARN	100	86.834	Equus_caballus
MGP_SPRETEiJ_G0021361	Parn	86	75.566	ENSEEUG00000010370	PARN	86	75.566	Erinaceus_europaeus
MGP_SPRETEiJ_G0021361	Parn	90	71.280	ENSELUG00000013139	parn	75	71.280	Esox_lucius
MGP_SPRETEiJ_G0021361	Parn	100	85.580	ENSFCAG00000044961	PARN	100	94.915	Felis_catus
MGP_SPRETEiJ_G0021361	Parn	99	78.922	ENSFALG00000003911	PARN	98	78.922	Ficedula_albicollis
MGP_SPRETEiJ_G0021361	Parn	100	84.483	ENSFDAG00000009234	PARN	100	84.483	Fukomys_damarensis
MGP_SPRETEiJ_G0021361	Parn	91	65.417	ENSFHEG00000013738	parn	92	74.576	Fundulus_heteroclitus
MGP_SPRETEiJ_G0021361	Parn	86	73.665	ENSGMOG00000003231	parn	99	73.665	Gadus_morhua
MGP_SPRETEiJ_G0021361	Parn	100	78.683	ENSGALG00000003091	PARN	100	78.683	Gallus_gallus
MGP_SPRETEiJ_G0021361	Parn	89	72.822	ENSGAFG00000011061	parn	83	72.041	Gambusia_affinis
MGP_SPRETEiJ_G0021361	Parn	92	70.289	ENSGACG00000019501	parn	100	67.347	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0021361	Parn	51	76.994	ENSGAGG00000023281	PARN	83	76.994	Gopherus_agassizii
MGP_SPRETEiJ_G0021361	Parn	97	86.473	ENSGGOG00000025224	PARN	100	94.915	Gorilla_gorilla
MGP_SPRETEiJ_G0021361	Parn	100	65.620	ENSHBUG00000017906	parn	90	74.674	Haplochromis_burtoni
MGP_SPRETEiJ_G0021361	Parn	100	84.953	ENSHGLG00000010886	PARN	100	84.953	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0021361	Parn	100	84.953	ENSHGLG00100014659	PARN	100	84.953	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0021361	Parn	88	69.355	ENSHCOG00000008683	parn	94	69.355	Hippocampus_comes
MGP_SPRETEiJ_G0021361	Parn	89	61.296	ENSIPUG00000012401	parn	84	61.296	Ictalurus_punctatus
MGP_SPRETEiJ_G0021361	Parn	100	85.737	ENSSTOG00000007519	PARN	100	85.737	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0021361	Parn	100	86.846	ENSJJAG00000023049	Parn	100	86.846	Jaculus_jaculus
MGP_SPRETEiJ_G0021361	Parn	91	72.318	ENSKMAG00000009462	parn	83	72.318	Kryptolebias_marmoratus
MGP_SPRETEiJ_G0021361	Parn	84	75.514	ENSLBEG00000009167	parn	84	75.514	Labrus_bergylta
MGP_SPRETEiJ_G0021361	Parn	79	76.984	ENSLACG00000004207	PARN	100	75.236	Latimeria_chalumnae
MGP_SPRETEiJ_G0021361	Parn	95	72.621	ENSLOCG00000000715	parn	87	72.287	Lepisosteus_oculatus
MGP_SPRETEiJ_G0021361	Parn	100	85.895	ENSLAFG00000015036	PARN	100	85.895	Loxodonta_africana
MGP_SPRETEiJ_G0021361	Parn	100	81.875	ENSMFAG00000044852	PARN	100	94.915	Macaca_fascicularis
MGP_SPRETEiJ_G0021361	Parn	100	86.385	ENSMMUG00000018849	PARN	100	94.915	Macaca_mulatta
MGP_SPRETEiJ_G0021361	Parn	100	86.541	ENSMNEG00000045108	PARN	100	94.915	Macaca_nemestrina
MGP_SPRETEiJ_G0021361	Parn	100	86.698	ENSMLEG00000031743	PARN	100	94.915	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0021361	Parn	84	75.560	ENSMAMG00000006939	parn	78	75.560	Mastacembelus_armatus
MGP_SPRETEiJ_G0021361	Parn	100	66.562	ENSMZEG00005013590	parn	90	75.000	Maylandia_zebra
MGP_SPRETEiJ_G0021361	Parn	95	78.783	ENSMGAG00000001004	PARN	95	78.783	Meleagris_gallopavo
MGP_SPRETEiJ_G0021361	Parn	100	86.730	ENSMAUG00000008025	Parn	100	86.730	Mesocricetus_auratus
MGP_SPRETEiJ_G0021361	Parn	100	87.304	ENSMICG00000016053	PARN	100	96.610	Microcebus_murinus
MGP_SPRETEiJ_G0021361	Parn	78	95.277	ENSMOCG00000022211	Parn	100	95.277	Microtus_ochrogaster
MGP_SPRETEiJ_G0021361	Parn	100	65.669	ENSMMOG00000011333	parn	100	65.512	Mola_mola
MGP_SPRETEiJ_G0021361	Parn	78	88.508	ENSMODG00000004915	PARN	99	88.508	Monodelphis_domestica
MGP_SPRETEiJ_G0021361	Parn	89	73.322	ENSMALG00000019426	parn	94	73.322	Monopterus_albus
MGP_SPRETEiJ_G0021361	Parn	100	99.038	MGP_CAROLIEiJ_G0020466	Parn	100	99.038	Mus_caroli
MGP_SPRETEiJ_G0021361	Parn	51	32.209	ENSMUSG00000073460	Pnldc1	97	31.077	Mus_musculus
MGP_SPRETEiJ_G0021361	Parn	100	99.038	ENSMUSG00000022685	Parn	100	99.038	Mus_musculus
MGP_SPRETEiJ_G0021361	Parn	100	96.635	MGP_PahariEiJ_G0016172	Parn	100	96.635	Mus_pahari
MGP_SPRETEiJ_G0021361	Parn	100	85.893	ENSMPUG00000014464	PARN	100	85.893	Mustela_putorius_furo
MGP_SPRETEiJ_G0021361	Parn	78	88.664	ENSMLUG00000005414	PARN	100	88.664	Myotis_lucifugus
MGP_SPRETEiJ_G0021361	Parn	84	74.532	ENSNBRG00000006805	parn	90	74.532	Neolamprologus_brichardi
MGP_SPRETEiJ_G0021361	Parn	100	86.385	ENSNLEG00000010241	PARN	100	94.915	Nomascus_leucogenys
MGP_SPRETEiJ_G0021361	Parn	91	69.167	ENSMEUG00000008178	-	91	69.167	Notamacropus_eugenii
MGP_SPRETEiJ_G0021361	Parn	99	81.141	ENSOPRG00000012187	PARN	100	81.141	Ochotona_princeps
MGP_SPRETEiJ_G0021361	Parn	100	78.391	ENSODEG00000001617	PARN	100	78.391	Octodon_degus
MGP_SPRETEiJ_G0021361	Parn	100	67.388	ENSONIG00000000151	parn	100	67.388	Oreochromis_niloticus
MGP_SPRETEiJ_G0021361	Parn	60	78.961	ENSOANG00000020155	-	97	80.000	Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0021361	Parn	99	84.882	ENSOCUG00000000322	PARN	100	84.882	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0021361	Parn	91	71.601	ENSORLG00020010313	parn	85	71.601	Oryzias_latipes_hni
MGP_SPRETEiJ_G0021361	Parn	91	71.084	ENSORLG00015000300	parn	85	71.084	Oryzias_latipes_hsok
MGP_SPRETEiJ_G0021361	Parn	100	63.893	ENSOMEG00000019555	parn	97	63.636	Oryzias_melastigma
MGP_SPRETEiJ_G0021361	Parn	78	88.798	ENSOGAG00000014626	PARN	100	88.798	Otolemur_garnettii
MGP_SPRETEiJ_G0021361	Parn	78	91.093	ENSOARG00000007574	PARN	100	91.093	Ovis_aries
MGP_SPRETEiJ_G0021361	Parn	100	86.228	ENSPPAG00000031438	PARN	100	94.915	Pan_paniscus
MGP_SPRETEiJ_G0021361	Parn	100	85.423	ENSPPRG00000018583	PARN	100	94.915	Panthera_pardus
MGP_SPRETEiJ_G0021361	Parn	100	85.423	ENSPTIG00000012135	PARN	100	94.915	Panthera_tigris_altaica
MGP_SPRETEiJ_G0021361	Parn	100	86.228	ENSPTRG00000007792	PARN	100	94.915	Pan_troglodytes
MGP_SPRETEiJ_G0021361	Parn	100	83.412	ENSPANG00000020099	PARN	100	94.915	Papio_anubis
MGP_SPRETEiJ_G0021361	Parn	91	72.569	ENSPKIG00000022807	parn	91	68.151	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0021361	Parn	95	81.219	ENSPSIG00000014804	PARN	100	78.756	Pelodiscus_sinensis
MGP_SPRETEiJ_G0021361	Parn	81	75.244	ENSPMGG00000014431	parn	74	73.684	Periophthalmus_magnuspinnatus
MGP_SPRETEiJ_G0021361	Parn	100	90.224	ENSPEMG00000018439	Parn	100	90.224	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0021361	Parn	82	64.943	ENSPMAG00000003956	parn	99	64.943	Petromyzon_marinus
MGP_SPRETEiJ_G0021361	Parn	67	80.142	ENSPCIG00000001259	PARN	91	91.525	Phascolarctos_cinereus
MGP_SPRETEiJ_G0021361	Parn	89	73.252	ENSPFOG00000012823	parn	83	72.461	Poecilia_formosa
MGP_SPRETEiJ_G0021361	Parn	89	73.427	ENSPLAG00000006395	parn	83	72.633	Poecilia_latipinna
MGP_SPRETEiJ_G0021361	Parn	89	73.427	ENSPMEG00000007711	parn	83	72.633	Poecilia_mexicana
MGP_SPRETEiJ_G0021361	Parn	89	73.077	ENSPREG00000000147	parn	83	72.289	Poecilia_reticulata
MGP_SPRETEiJ_G0021361	Parn	100	85.959	ENSPPYG00000007123	PARN	100	85.959	Pongo_abelii
MGP_SPRETEiJ_G0021361	Parn	95	74.876	ENSPCAG00000001741	PARN	100	74.876	Procavia_capensis
MGP_SPRETEiJ_G0021361	Parn	100	84.796	ENSPCOG00000019292	PARN	100	96.610	Propithecus_coquereli
MGP_SPRETEiJ_G0021361	Parn	99	81.775	ENSPVAG00000002547	PARN	100	81.775	Pteropus_vampyrus
MGP_SPRETEiJ_G0021361	Parn	92	72.137	ENSPNYG00000006835	parn	90	71.004	Pundamilia_nyererei
MGP_SPRETEiJ_G0021361	Parn	82	72.587	ENSPNAG00000018905	parn	84	72.587	Pygocentrus_nattereri
MGP_SPRETEiJ_G0021361	Parn	100	92.368	ENSRNOG00000002912	Parn	100	97.030	Rattus_norvegicus
MGP_SPRETEiJ_G0021361	Parn	51	31.692	ENSRNOG00000023140	Pnldc1	89	31.077	Rattus_norvegicus
MGP_SPRETEiJ_G0021361	Parn	52	84.384	ENSRBIG00000018726	PARN	100	84.384	Rhinopithecus_bieti
MGP_SPRETEiJ_G0021361	Parn	52	84.384	ENSRROG00000011162	-	100	84.384	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0021361	Parn	100	84.351	ENSSBOG00000034726	PARN	100	94.915	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0021361	Parn	66	86.842	ENSSHAG00000008493	PARN	94	86.842	Sarcophilus_harrisii
MGP_SPRETEiJ_G0021361	Parn	96	70.978	ENSSFOG00015014165	parn	94	72.426	Scleropages_formosus
MGP_SPRETEiJ_G0021361	Parn	100	61.215	ENSSMAG00000000685	parn	100	61.059	Scophthalmus_maximus
MGP_SPRETEiJ_G0021361	Parn	92	70.819	ENSSDUG00000014555	parn	83	70.819	Seriola_dumerili
MGP_SPRETEiJ_G0021361	Parn	81	89.171	ENSSARG00000014339	PARN	89	89.171	Sorex_araneus
MGP_SPRETEiJ_G0021361	Parn	100	79.624	ENSSPUG00000007719	PARN	100	79.624	Sphenodon_punctatus
MGP_SPRETEiJ_G0021361	Parn	91	72.759	ENSSPAG00000007095	parn	89	69.627	Stegastes_partitus
MGP_SPRETEiJ_G0021361	Parn	100	85.580	ENSSSCG00000007878	PARN	89	85.580	Sus_scrofa
MGP_SPRETEiJ_G0021361	Parn	55	31.638	ENSTGUG00000011418	PNLDC1	69	30.791	Taeniopygia_guttata
MGP_SPRETEiJ_G0021361	Parn	99	78.673	ENSTGUG00000004971	PARN	99	78.673	Taeniopygia_guttata
MGP_SPRETEiJ_G0021361	Parn	100	67.762	ENSTNIG00000008252	parn	100	67.919	Tetraodon_nigroviridis
MGP_SPRETEiJ_G0021361	Parn	91	73.748	ENSTBEG00000010407	PARN	100	73.748	Tupaia_belangeri
MGP_SPRETEiJ_G0021361	Parn	99	80.507	ENSTTRG00000002843	PARN	100	80.507	Tursiops_truncatus
MGP_SPRETEiJ_G0021361	Parn	69	77.982	ENSUAMG00000008283	PARN	94	73.853	Ursus_americanus
MGP_SPRETEiJ_G0021361	Parn	100	86.050	ENSUMAG00000004527	PARN	100	86.050	Ursus_maritimus
MGP_SPRETEiJ_G0021361	Parn	96	83.170	ENSVPAG00000008968	PARN	99	83.170	Vicugna_pacos
MGP_SPRETEiJ_G0021361	Parn	100	85.266	ENSVVUG00000019509	PARN	100	85.266	Vulpes_vulpes
MGP_SPRETEiJ_G0021361	Parn	100	71.451	ENSXETG00000010994	parn	100	79.848	Xenopus_tropicalis
MGP_SPRETEiJ_G0021361	Parn	89	68.586	ENSXCOG00000015990	parn	96	67.869	Xiphophorus_couchianus
MGP_SPRETEiJ_G0021361	Parn	91	71.429	ENSXMAG00000014783	parn	83	71.429	Xiphophorus_maculatus