EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0021544 (Gene tree)
Gene ID: -
Gene Symbol: Lsg1
Alias: D16Bwg1547e
Full Name: large 60S subunit nuclear export GTPase 1
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Minus strand
Length: 29765 bases
Position: chr16:27909132-27938896
Accession: 107236
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0043066	MMR_HSR1	PF01926.23	6.8e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0043066	-	2671	-	MGP_SPRETEiJ_P0043066	644 (aa)	-	-
MGP_SPRETEiJ_T0043067	-	2253	-	MGP_SPRETEiJ_P0043067	35 (aa)	-	UPI000161160C
MGP_SPRETEiJ_T0043071	-	709	-	MGP_SPRETEiJ_P0043071	236 (aa)	-	-
MGP_SPRETEiJ_T0043070	-	2722	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0043073	-	645	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0043072	-	692	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0043068	-	2381	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0043069	-	891	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0021544's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0021544's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_SPRETEiJ_G0021544	Lsg1	66	30.909	MGP_SPRETEiJ_G0022452	Gnl1	65	31.136

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0021544	Lsg1	100	81.763	ENSG00000041802	LSG1	98	93.103	Homo_sapiens
MGP_SPRETEiJ_G0021544	Lsg1	100	65.224	ENSAPOG00000009694	lsg1	100	64.915	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0021544	Lsg1	100	78.636	ENSAMEG00000009343	LSG1	100	78.636	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0021544	Lsg1	98	65.300	ENSACIG00000012406	lsg1	100	64.417	Amphilophus_citrinellus
MGP_SPRETEiJ_G0021544	Lsg1	100	64.760	ENSAOCG00000016066	lsg1	100	64.451	Amphiprion_ocellaris
MGP_SPRETEiJ_G0021544	Lsg1	100	65.688	ENSAPEG00000003252	lsg1	100	65.533	Amphiprion_percula
MGP_SPRETEiJ_G0021544	Lsg1	98	66.193	ENSATEG00000011794	lsg1	100	66.099	Anabas_testudineus
MGP_SPRETEiJ_G0021544	Lsg1	95	64.025	ENSACAG00000004222	LSG1	99	63.291	Anolis_carolinensis
MGP_SPRETEiJ_G0021544	Lsg1	100	82.827	ENSANAG00000021153	LSG1	100	82.827	Aotus_nancymaae
MGP_SPRETEiJ_G0021544	Lsg1	100	64.199	ENSACLG00000000520	lsg1	100	62.407	Astatotilapia_calliptera
MGP_SPRETEiJ_G0021544	Lsg1	99	65.396	ENSAMXG00000008271	lsg1	99	64.787	Astyanax_mexicanus
MGP_SPRETEiJ_G0021544	Lsg1	100	80.982	ENSBTAG00000008461	LSG1	100	80.828	Bos_taurus
MGP_SPRETEiJ_G0021544	Lsg1	69	49.505	WBGene00016907	C53H9.2	93	54.815	Caenorhabditis_elegans
MGP_SPRETEiJ_G0021544	Lsg1	100	82.979	ENSCJAG00000013962	LSG1	100	82.979	Callithrix_jacchus
MGP_SPRETEiJ_G0021544	Lsg1	95	79.712	ENSCAFG00000013445	LSG1	100	79.712	Canis_familiaris
MGP_SPRETEiJ_G0021544	Lsg1	100	78.550	ENSCAFG00020002216	LSG1	100	78.550	Canis_lupus_dingo
MGP_SPRETEiJ_G0021544	Lsg1	100	81.889	ENSCHIG00000015769	LSG1	100	81.889	Capra_hircus
MGP_SPRETEiJ_G0021544	Lsg1	100	82.398	ENSTSYG00000001447	LSG1	100	82.246	Carlito_syrichta
MGP_SPRETEiJ_G0021544	Lsg1	95	77.110	ENSCAPG00000009856	LSG1	100	76.596	Cavia_aperea
MGP_SPRETEiJ_G0021544	Lsg1	100	81.915	ENSCCAG00000035744	LSG1	100	81.915	Cebus_capucinus
MGP_SPRETEiJ_G0021544	Lsg1	100	82.246	ENSCATG00000042060	LSG1	100	80.699	Cercocebus_atys
MGP_SPRETEiJ_G0021544	Lsg1	100	82.549	ENSCSAG00000008796	LSG1	92	82.371	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0021544	Lsg1	100	68.945	ENSCPBG00000015941	LSG1	83	68.945	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0021544	Lsg1	74	63.158	ENSCING00000007079	-	99	63.158	Ciona_intestinalis
MGP_SPRETEiJ_G0021544	Lsg1	78	54.000	ENSCSAVG00000002514	-	89	62.245	Ciona_savignyi
MGP_SPRETEiJ_G0021544	Lsg1	100	81.942	ENSCANG00000030709	LSG1	100	81.763	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0021544	Lsg1	100	88.037	ENSCGRG00001019846	Lsg1	100	88.190	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0021544	Lsg1	100	88.037	ENSCGRG00000014617	Lsg1	100	88.190	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0021544	Lsg1	98	65.252	ENSCSEG00000008522	lsg1	100	63.594	Cynoglossus_semilaevis
MGP_SPRETEiJ_G0021544	Lsg1	98	67.091	ENSCVAG00000002484	lsg1	100	66.512	Cyprinodon_variegatus
MGP_SPRETEiJ_G0021544	Lsg1	100	67.385	ENSDARG00000015352	lsg1	100	67.593	Danio_rerio
MGP_SPRETEiJ_G0021544	Lsg1	100	79.604	ENSDNOG00000006224	LSG1	100	79.148	Dasypus_novemcinctus
MGP_SPRETEiJ_G0021544	Lsg1	99	48.318	FBgn0266284	Ns3	99	48.165	Drosophila_melanogaster
MGP_SPRETEiJ_G0021544	Lsg1	88	86.667	ENSETEG00000003888	LSG1	89	86.667	Echinops_telfairi
MGP_SPRETEiJ_G0021544	Lsg1	88	57.168	ENSEBUG00000003119	lsg1	85	56.143	Eptatretus_burgeri
MGP_SPRETEiJ_G0021544	Lsg1	100	81.639	ENSEASG00005000678	LSG1	100	81.639	Equus_asinus_asinus
MGP_SPRETEiJ_G0021544	Lsg1	100	81.942	ENSECAG00000017659	LSG1	100	81.942	Equus_caballus
MGP_SPRETEiJ_G0021544	Lsg1	87	76.923	ENSEEUG00000015217	LSG1	87	76.923	Erinaceus_europaeus
MGP_SPRETEiJ_G0021544	Lsg1	100	63.328	ENSELUG00000023973	lsg1	100	63.174	Esox_lucius
MGP_SPRETEiJ_G0021544	Lsg1	100	80.728	ENSFCAG00000024957	LSG1	100	80.577	Felis_catus
MGP_SPRETEiJ_G0021544	Lsg1	99	64.536	ENSFALG00000007210	LSG1	99	64.384	Ficedula_albicollis
MGP_SPRETEiJ_G0021544	Lsg1	100	79.444	ENSFDAG00000017373	LSG1	100	79.444	Fukomys_damarensis
MGP_SPRETEiJ_G0021544	Lsg1	97	64.567	ENSFHEG00000003680	lsg1	99	64.220	Fundulus_heteroclitus
MGP_SPRETEiJ_G0021544	Lsg1	83	72.269	ENSGMOG00000015834	lsg1	91	69.767	Gadus_morhua
MGP_SPRETEiJ_G0021544	Lsg1	99	66.063	ENSGALG00000007058	LSG1	87	66.214	Gallus_gallus
MGP_SPRETEiJ_G0021544	Lsg1	97	66.032	ENSGAFG00000015831	lsg1	99	65.789	Gambusia_affinis
MGP_SPRETEiJ_G0021544	Lsg1	98	64.688	ENSGACG00000009323	lsg1	100	63.859	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0021544	Lsg1	100	81.639	ENSGGOG00000000520	LSG1	100	81.459	Gorilla_gorilla
MGP_SPRETEiJ_G0021544	Lsg1	100	64.492	ENSHBUG00000005659	lsg1	100	63.158	Haplochromis_burtoni
MGP_SPRETEiJ_G0021544	Lsg1	100	78.274	ENSHGLG00000017390	LSG1	100	76.380	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0021544	Lsg1	100	78.120	ENSHGLG00100018587	LSG1	100	76.227	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0021544	Lsg1	98	65.039	ENSHCOG00000016848	lsg1	100	63.846	Hippocampus_comes
MGP_SPRETEiJ_G0021544	Lsg1	100	66.873	ENSIPUG00000008631	lsg1	100	66.409	Ictalurus_punctatus
MGP_SPRETEiJ_G0021544	Lsg1	81	81.818	ENSSTOG00000010234	LSG1	99	81.818	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0021544	Lsg1	99	82.636	ENSJJAG00000015513	Lsg1	99	82.326	Jaculus_jaculus
MGP_SPRETEiJ_G0021544	Lsg1	98	64.353	ENSKMAG00000009681	lsg1	100	63.524	Kryptolebias_marmoratus
MGP_SPRETEiJ_G0021544	Lsg1	98	64.025	ENSLBEG00000024261	lsg1	100	63.665	Labrus_bergylta
MGP_SPRETEiJ_G0021544	Lsg1	100	66.319	ENSLACG00000013399	LSG1	100	66.767	Latimeria_chalumnae
MGP_SPRETEiJ_G0021544	Lsg1	98	65.554	ENSLOCG00000004918	lsg1	100	66.667	Lepisosteus_oculatus
MGP_SPRETEiJ_G0021544	Lsg1	100	81.298	ENSLAFG00000012919	-	100	81.269	Loxodonta_africana
MGP_SPRETEiJ_G0021544	Lsg1	100	82.398	ENSMFAG00000039903	LSG1	100	80.851	Macaca_fascicularis
MGP_SPRETEiJ_G0021544	Lsg1	100	82.549	ENSMMUG00000010708	LSG1	100	82.371	Macaca_mulatta
MGP_SPRETEiJ_G0021544	Lsg1	100	82.549	ENSMNEG00000031538	LSG1	100	81.003	Macaca_nemestrina
MGP_SPRETEiJ_G0021544	Lsg1	100	82.219	ENSMLEG00000041184	LSG1	100	82.219	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0021544	Lsg1	100	64.209	ENSMAMG00000000470	lsg1	100	63.748	Mastacembelus_armatus
MGP_SPRETEiJ_G0021544	Lsg1	100	64.643	ENSMZEG00005017865	lsg1	100	63.308	Maylandia_zebra
MGP_SPRETEiJ_G0021544	Lsg1	88	68.143	ENSMGAG00000007050	LSG1	99	68.143	Meleagris_gallopavo
MGP_SPRETEiJ_G0021544	Lsg1	96	84.102	ENSMAUG00000016976	Lsg1	97	84.102	Mesocricetus_auratus
MGP_SPRETEiJ_G0021544	Lsg1	100	81.250	ENSMICG00000049087	LSG1	100	81.098	Microcebus_murinus
MGP_SPRETEiJ_G0021544	Lsg1	100	85.015	ENSMOCG00000022136	Lsg1	100	85.015	Microtus_ochrogaster
MGP_SPRETEiJ_G0021544	Lsg1	85	73.333	ENSMMOG00000008884	lsg1	100	63.665	Mola_mola
MGP_SPRETEiJ_G0021544	Lsg1	99	60.909	ENSMODG00000019828	LSG1	99	59.848	Monodelphis_domestica
MGP_SPRETEiJ_G0021544	Lsg1	100	96.894	MGP_CAROLIEiJ_G0020648	Lsg1	100	96.894	Mus_caroli
MGP_SPRETEiJ_G0021544	Lsg1	100	98.602	ENSMUSG00000022538	Lsg1	100	98.602	Mus_musculus
MGP_SPRETEiJ_G0021544	Lsg1	100	95.532	MGP_PahariEiJ_G0016352	Lsg1	100	95.532	Mus_pahari
MGP_SPRETEiJ_G0021544	Lsg1	100	79.514	ENSMPUG00000003734	LSG1	100	79.514	Mustela_putorius_furo
MGP_SPRETEiJ_G0021544	Lsg1	100	82.389	ENSMLUG00000012548	LSG1	100	82.236	Myotis_lucifugus
MGP_SPRETEiJ_G0021544	Lsg1	100	84.025	ENSNGAG00000021872	Lsg1	100	84.025	Nannospalax_galili
MGP_SPRETEiJ_G0021544	Lsg1	100	82.246	ENSNLEG00000008293	LSG1	100	82.219	Nomascus_leucogenys
MGP_SPRETEiJ_G0021544	Lsg1	70	72.165	ENSMEUG00000009041	-	75	74.257	Notamacropus_eugenii
MGP_SPRETEiJ_G0021544	Lsg1	100	64.384	ENSONIG00000002635	lsg1	100	64.384	Oreochromis_niloticus
MGP_SPRETEiJ_G0021544	Lsg1	95	72.669	ENSOANG00000012742	LSG1	99	71.132	Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0021544	Lsg1	100	81.942	ENSOCUG00000004817	LSG1	100	82.094	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0021544	Lsg1	98	64.873	ENSORLG00000007695	lsg1	100	64.596	Oryzias_latipes
MGP_SPRETEiJ_G0021544	Lsg1	98	64.873	ENSORLG00020016286	lsg1	100	64.496	Oryzias_latipes_hni
MGP_SPRETEiJ_G0021544	Lsg1	98	64.976	ENSORLG00015012025	lsg1	100	64.130	Oryzias_latipes_hsok
MGP_SPRETEiJ_G0021544	Lsg1	98	64.241	ENSOMEG00000022379	lsg1	100	64.031	Oryzias_melastigma
MGP_SPRETEiJ_G0021544	Lsg1	100	80.694	ENSOGAG00000003475	LSG1	100	80.514	Otolemur_garnettii
MGP_SPRETEiJ_G0021544	Lsg1	100	80.245	ENSOARG00000020403	LSG1	100	79.786	Ovis_aries
MGP_SPRETEiJ_G0021544	Lsg1	100	81.459	ENSPPAG00000029271	LSG1	100	81.459	Pan_paniscus
MGP_SPRETEiJ_G0021544	Lsg1	100	79.880	ENSPPRG00000010281	LSG1	100	79.730	Panthera_pardus
MGP_SPRETEiJ_G0021544	Lsg1	100	80.880	ENSPTIG00000010789	LSG1	100	80.728	Panthera_tigris_altaica
MGP_SPRETEiJ_G0021544	Lsg1	100	81.307	ENSPTRG00000015760	LSG1	100	81.307	Pan_troglodytes
MGP_SPRETEiJ_G0021544	Lsg1	100	82.701	ENSPANG00000018249	LSG1	100	81.155	Papio_anubis
MGP_SPRETEiJ_G0021544	Lsg1	98	65.190	ENSPKIG00000002895	lsg1	100	63.158	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0021544	Lsg1	96	66.250	ENSPSIG00000009821	LSG1	100	66.142	Pelodiscus_sinensis
MGP_SPRETEiJ_G0021544	Lsg1	95	65.366	ENSPMGG00000000931	lsg1	100	65.203	Periophthalmus_magnuspinnatus
MGP_SPRETEiJ_G0021544	Lsg1	100	86.697	ENSPEMG00000012082	-	100	86.239	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0021544	Lsg1	99	60.000	ENSPMAG00000007451	lsg1	99	59.699	Petromyzon_marinus
MGP_SPRETEiJ_G0021544	Lsg1	100	68.394	ENSPCIG00000013890	LSG1	82	68.394	Phascolarctos_cinereus
MGP_SPRETEiJ_G0021544	Lsg1	97	66.984	ENSPFOG00000021882	lsg1	99	66.873	Poecilia_formosa
MGP_SPRETEiJ_G0021544	Lsg1	97	66.349	ENSPLAG00000019536	lsg1	99	65.944	Poecilia_latipinna
MGP_SPRETEiJ_G0021544	Lsg1	97	66.297	ENSPMEG00000017281	lsg1	99	66.204	Poecilia_mexicana
MGP_SPRETEiJ_G0021544	Lsg1	97	57.585	ENSPREG00000006048	lsg1	99	57.553	Poecilia_reticulata
MGP_SPRETEiJ_G0021544	Lsg1	92	80.890	ENSPPYG00000014425	LSG1	100	79.703	Pongo_abelii
MGP_SPRETEiJ_G0021544	Lsg1	90	86.667	ENSPCAG00000005511	LSG1	90	86.667	Procavia_capensis
MGP_SPRETEiJ_G0021544	Lsg1	100	81.032	ENSPCOG00000012360	LSG1	100	80.880	Propithecus_coquereli
MGP_SPRETEiJ_G0021544	Lsg1	100	64.048	ENSPNYG00000021994	lsg1	100	62.259	Pundamilia_nyererei
MGP_SPRETEiJ_G0021544	Lsg1	100	66.212	ENSPNAG00000015533	lsg1	100	65.957	Pygocentrus_nattereri
MGP_SPRETEiJ_G0021544	Lsg1	100	91.450	ENSRNOG00000001727	Lsg1	100	91.145	Rattus_norvegicus
MGP_SPRETEiJ_G0021544	Lsg1	100	81.184	ENSRBIG00000029053	LSG1	100	80.974	Rhinopithecus_bieti
MGP_SPRETEiJ_G0021544	Lsg1	100	81.184	ENSRROG00000037702	LSG1	100	80.974	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0021544	Lsg1	82	40.585	YGL099W	LSG1	63	58.084	Saccharomyces_cerevisiae
MGP_SPRETEiJ_G0021544	Lsg1	100	83.131	ENSSBOG00000034938	LSG1	100	83.131	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0021544	Lsg1	78	67.495	ENSSHAG00000003487	LSG1	100	67.495	Sarcophilus_harrisii
MGP_SPRETEiJ_G0021544	Lsg1	98	65.415	ENSSFOG00015008955	lsg1	99	64.923	Scleropages_formosus
MGP_SPRETEiJ_G0021544	Lsg1	98	66.199	ENSSDUG00000004622	lsg1	100	65.396	Seriola_dumerili
MGP_SPRETEiJ_G0021544	Lsg1	98	66.193	ENSSLDG00000010869	lsg1	100	65.789	Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0021544	Lsg1	82	78.886	ENSSARG00000012981	LSG1	81	77.551	Sorex_araneus
MGP_SPRETEiJ_G0021544	Lsg1	100	69.592	ENSSPUG00000016347	LSG1	100	68.986	Sphenodon_punctatus
MGP_SPRETEiJ_G0021544	Lsg1	100	64.561	ENSSPAG00000005508	lsg1	100	64.660	Stegastes_partitus
MGP_SPRETEiJ_G0021544	Lsg1	100	80.805	ENSSSCG00000011827	LSG1	100	80.186	Sus_scrofa
MGP_SPRETEiJ_G0021544	Lsg1	89	65.101	ENSTGUG00000009068	LSG1	100	65.101	Taeniopygia_guttata
MGP_SPRETEiJ_G0021544	Lsg1	98	62.124	ENSTRUG00000017380	lsg1	100	61.824	Takifugu_rubripes
MGP_SPRETEiJ_G0021544	Lsg1	98	65.452	ENSTNIG00000015570	lsg1	100	65.379	Tetraodon_nigroviridis
MGP_SPRETEiJ_G0021544	Lsg1	100	74.006	ENSTTRG00000000559	LSG1	100	73.089	Tursiops_truncatus
MGP_SPRETEiJ_G0021544	Lsg1	100	79.818	ENSUAMG00000012454	LSG1	100	79.818	Ursus_americanus
MGP_SPRETEiJ_G0021544	Lsg1	100	79.818	ENSUMAG00000000855	LSG1	100	79.818	Ursus_maritimus
MGP_SPRETEiJ_G0021544	Lsg1	95	75.559	ENSVPAG00000012400	LSG1	100	75.120	Vicugna_pacos
MGP_SPRETEiJ_G0021544	Lsg1	95	78.594	ENSVVUG00000008956	LSG1	97	78.594	Vulpes_vulpes
MGP_SPRETEiJ_G0021544	Lsg1	100	66.003	ENSXETG00000003451	lsg1	100	66.212	Xenopus_tropicalis
MGP_SPRETEiJ_G0021544	Lsg1	97	65.506	ENSXCOG00000003239	lsg1	99	65.485	Xiphophorus_couchianus
MGP_SPRETEiJ_G0021544	Lsg1	97	65.586	ENSXMAG00000005536	lsg1	99	65.361	Xiphophorus_maculatus