EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0021724 (Gene tree)
Gene ID: -
Gene Symbol: Cmss1
Alias: 1110001A06Rik|2610528E23Rik|4930572F24Rik
Full Name: cms small ribosomal subunit 1
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Minus strand
Length: 321453 bases
Position: chr16:55667036-55988488
Accession: 1913747
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0043799	CMS1	PF14617.6	1.7e-31	1	1
MGP_SPRETEiJ_P0043799	DEAD	PF00270.29	1.1e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0043799	-	930	-	MGP_SPRETEiJ_P0043799	276 (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0021724's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0021724's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0021724	Cmss1	100	81.786	ENSG00000184220	CMSS1	99	88.889	Homo_sapiens
MGP_SPRETEiJ_G0021724	Cmss1	73	64.356	ENSAPOG00000010604	cmss1	92	59.149	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0021724	Cmss1	93	81.538	ENSAMEG00000004092	CMSS1	100	81.538	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0021724	Cmss1	73	53.960	ENSACIG00000021854	cmss1	75	53.960	Amphilophus_citrinellus
MGP_SPRETEiJ_G0021724	Cmss1	100	51.557	ENSAOCG00000013361	cmss1	100	52.595	Amphiprion_ocellaris
MGP_SPRETEiJ_G0021724	Cmss1	100	51.034	ENSAPEG00000005829	cmss1	100	52.041	Amphiprion_percula
MGP_SPRETEiJ_G0021724	Cmss1	100	52.901	ENSATEG00000008209	cmss1	100	54.266	Anabas_testudineus
MGP_SPRETEiJ_G0021724	Cmss1	83	68.696	ENSAPLG00000010542	CMSS1	100	68.696	Anas_platyrhynchos
MGP_SPRETEiJ_G0021724	Cmss1	91	65.116	ENSACAG00000011065	CMSS1	95	65.116	Anolis_carolinensis
MGP_SPRETEiJ_G0021724	Cmss1	100	79.715	ENSANAG00000023565	CMSS1	100	79.715	Aotus_nancymaae
MGP_SPRETEiJ_G0021724	Cmss1	100	50.512	ENSACLG00000027294	cmss1	100	51.536	Astatotilapia_calliptera
MGP_SPRETEiJ_G0021724	Cmss1	100	46.284	ENSAMXG00000002046	cmss1	100	46.284	Astyanax_mexicanus
MGP_SPRETEiJ_G0021724	Cmss1	100	83.571	ENSBTAG00000013663	CMSS1	100	83.571	Bos_taurus
MGP_SPRETEiJ_G0021724	Cmss1	100	80.427	ENSCJAG00000000610	CMSS1	100	80.427	Callithrix_jacchus
MGP_SPRETEiJ_G0021724	Cmss1	93	83.398	ENSCAFG00000009230	CMSS1	93	83.398	Canis_familiaris
MGP_SPRETEiJ_G0021724	Cmss1	93	83.077	ENSCAFG00020009464	-	95	83.077	Canis_lupus_dingo
MGP_SPRETEiJ_G0021724	Cmss1	83	78.017	ENSCAFG00020024156	-	73	78.017	Canis_lupus_dingo
MGP_SPRETEiJ_G0021724	Cmss1	96	79.630	ENSCHIG00000013003	CMSS1	98	79.336	Capra_hircus
MGP_SPRETEiJ_G0021724	Cmss1	96	76.838	ENSTSYG00000009266	CMSS1	99	79.151	Carlito_syrichta
MGP_SPRETEiJ_G0021724	Cmss1	81	68.261	ENSCAPG00000013584	CMSS1	88	73.846	Cavia_aperea
MGP_SPRETEiJ_G0021724	Cmss1	100	81.071	ENSCPOG00000014680	CMSS1	100	81.071	Cavia_porcellus
MGP_SPRETEiJ_G0021724	Cmss1	100	81.495	ENSCCAG00000034685	CMSS1	100	81.495	Cebus_capucinus
MGP_SPRETEiJ_G0021724	Cmss1	100	81.786	ENSCATG00000031980	CMSS1	100	81.786	Cercocebus_atys
MGP_SPRETEiJ_G0021724	Cmss1	83	85.652	ENSCLAG00000011241	CMSS1	98	85.652	Chinchilla_lanigera
MGP_SPRETEiJ_G0021724	Cmss1	88	83.265	ENSCSAG00000006024	CMSS1	99	83.265	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0021724	Cmss1	100	63.082	ENSCHOG00000012098	CMSS1	100	63.082	Choloepus_hoffmanni
MGP_SPRETEiJ_G0021724	Cmss1	71	41.709	ENSCING00000014848	-	100	42.781	Ciona_intestinalis
MGP_SPRETEiJ_G0021724	Cmss1	100	82.143	ENSCANG00000031337	CMSS1	100	82.143	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0021724	Cmss1	100	86.380	ENSCGRG00001014305	Cmss1	100	88.172	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0021724	Cmss1	92	88.716	ENSCGRG00000006722	Cmss1	99	88.716	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0021724	Cmss1	100	49.320	ENSCSEG00000004958	cmss1	100	51.014	Cynoglossus_semilaevis
MGP_SPRETEiJ_G0021724	Cmss1	100	48.980	ENSCVAG00000005039	cmss1	100	52.069	Cyprinodon_variegatus
MGP_SPRETEiJ_G0021724	Cmss1	100	46.284	ENSDARG00000112579	cmss1	100	47.099	Danio_rerio
MGP_SPRETEiJ_G0021724	Cmss1	94	81.154	ENSDNOG00000040418	CMSS1	92	81.712	Dasypus_novemcinctus
MGP_SPRETEiJ_G0021724	Cmss1	100	82.500	ENSDORG00000010461	Cmss1	100	82.500	Dipodomys_ordii
MGP_SPRETEiJ_G0021724	Cmss1	96	75.746	ENSEASG00005010966	CMSS1	98	86.047	Equus_asinus_asinus
MGP_SPRETEiJ_G0021724	Cmss1	95	78.571	ENSECAG00000015662	CMSS1	99	83.260	Equus_caballus
MGP_SPRETEiJ_G0021724	Cmss1	100	52.857	ENSEEUG00000007624	-	100	52.500	Erinaceus_europaeus
MGP_SPRETEiJ_G0021724	Cmss1	100	49.836	ENSELUG00000019459	cmss1	100	50.820	Esox_lucius
MGP_SPRETEiJ_G0021724	Cmss1	100	85.000	ENSFCAG00000044577	CMSS1	100	85.000	Felis_catus
MGP_SPRETEiJ_G0021724	Cmss1	83	66.957	ENSFALG00000005816	CMSS1	97	66.957	Ficedula_albicollis
MGP_SPRETEiJ_G0021724	Cmss1	83	83.843	ENSFDAG00000012577	CMSS1	100	83.843	Fukomys_damarensis
MGP_SPRETEiJ_G0021724	Cmss1	82	59.565	ENSFHEG00000012008	cmss1	95	60.870	Fundulus_heteroclitus
MGP_SPRETEiJ_G0021724	Cmss1	99	52.128	ENSGMOG00000016729	cmss1	100	51.773	Gadus_morhua
MGP_SPRETEiJ_G0021724	Cmss1	96	61.798	ENSGALG00000015267	CMSS1	99	61.798	Gallus_gallus
MGP_SPRETEiJ_G0021724	Cmss1	75	63.592	ENSGAFG00000021217	cmss1	77	63.366	Gambusia_affinis
MGP_SPRETEiJ_G0021724	Cmss1	99	48.582	ENSGACG00000002798	cmss1	100	50.352	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0021724	Cmss1	87	70.782	ENSGAGG00000019861	CMSS1	94	70.782	Gopherus_agassizii
MGP_SPRETEiJ_G0021724	Cmss1	93	82.239	ENSGGOG00000014125	CMSS1	99	82.239	Gorilla_gorilla
MGP_SPRETEiJ_G0021724	Cmss1	100	50.000	ENSHBUG00000008431	cmss1	100	51.712	Haplochromis_burtoni
MGP_SPRETEiJ_G0021724	Cmss1	90	81.855	ENSHGLG00000019481	CMSS1	99	81.855	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0021724	Cmss1	92	81.102	ENSHGLG00100010314	CMSS1	99	81.102	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0021724	Cmss1	100	51.864	ENSHCOG00000003222	cmss1	100	53.220	Hippocampus_comes
MGP_SPRETEiJ_G0021724	Cmss1	100	48.639	ENSIPUG00000011591	cmss1	100	48.621	Ictalurus_punctatus
MGP_SPRETEiJ_G0021724	Cmss1	100	82.143	ENSSTOG00000019366	CMSS1	100	82.143	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0021724	Cmss1	100	79.643	ENSJJAG00000014894	Cmss1	99	82.960	Jaculus_jaculus
MGP_SPRETEiJ_G0021724	Cmss1	73	53.465	ENSKMAG00000002390	cmss1	81	53.465	Kryptolebias_marmoratus
MGP_SPRETEiJ_G0021724	Cmss1	73	58.128	ENSLBEG00000006298	cmss1	83	58.128	Labrus_bergylta
MGP_SPRETEiJ_G0021724	Cmss1	83	65.652	ENSLACG00000009293	CMSS1	100	65.652	Latimeria_chalumnae
MGP_SPRETEiJ_G0021724	Cmss1	100	50.883	ENSLOCG00000009391	cmss1	100	51.237	Lepisosteus_oculatus
MGP_SPRETEiJ_G0021724	Cmss1	83	83.843	ENSLAFG00000017509	CMSS1	100	83.843	Loxodonta_africana
MGP_SPRETEiJ_G0021724	Cmss1	100	82.143	ENSMFAG00000045006	CMSS1	100	82.143	Macaca_fascicularis
MGP_SPRETEiJ_G0021724	Cmss1	100	81.786	ENSMMUG00000002939	CMSS1	98	84.163	Macaca_mulatta
MGP_SPRETEiJ_G0021724	Cmss1	100	81.786	ENSMNEG00000031315	CMSS1	100	81.786	Macaca_nemestrina
MGP_SPRETEiJ_G0021724	Cmss1	100	81.786	ENSMLEG00000033660	CMSS1	100	81.786	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0021724	Cmss1	100	51.724	ENSMAMG00000017176	cmss1	100	51.379	Mastacembelus_armatus
MGP_SPRETEiJ_G0021724	Cmss1	100	50.512	ENSMZEG00005021886	cmss1	100	51.536	Maylandia_zebra
MGP_SPRETEiJ_G0021724	Cmss1	83	67.686	ENSMGAG00000014360	CMSS1	100	67.686	Meleagris_gallopavo
MGP_SPRETEiJ_G0021724	Cmss1	100	67.742	ENSMAUG00000020609	Cmss1	100	67.742	Mesocricetus_auratus
MGP_SPRETEiJ_G0021724	Cmss1	100	82.143	ENSMICG00000048977	CMSS1	100	82.143	Microcebus_murinus
MGP_SPRETEiJ_G0021724	Cmss1	100	88.043	ENSMOCG00000021937	Cmss1	100	88.043	Microtus_ochrogaster
MGP_SPRETEiJ_G0021724	Cmss1	73	60.396	ENSMMOG00000019794	cmss1	97	54.167	Mola_mola
MGP_SPRETEiJ_G0021724	Cmss1	94	71.538	ENSMODG00000002275	CMSS1	98	71.538	Monodelphis_domestica
MGP_SPRETEiJ_G0021724	Cmss1	100	52.055	ENSMALG00000004250	cmss1	100	52.443	Monopterus_albus
MGP_SPRETEiJ_G0021724	Cmss1	100	98.188	MGP_CAROLIEiJ_G0020824	Cmss1	100	98.188	Mus_caroli
MGP_SPRETEiJ_G0021724	Cmss1	100	98.913	ENSMUSG00000022748	Cmss1	100	98.913	Mus_musculus
MGP_SPRETEiJ_G0021724	Cmss1	100	96.377	MGP_PahariEiJ_G0016524	Cmss1	100	96.377	Mus_pahari
MGP_SPRETEiJ_G0021724	Cmss1	92	85.271	ENSMPUG00000011324	CMSS1	99	84.615	Mustela_putorius_furo
MGP_SPRETEiJ_G0021724	Cmss1	93	83.908	ENSMLUG00000001131	CMSS1	99	83.908	Myotis_lucifugus
MGP_SPRETEiJ_G0021724	Cmss1	100	83.929	ENSNGAG00000020316	Cmss1	100	83.929	Nannospalax_galili
MGP_SPRETEiJ_G0021724	Cmss1	100	50.171	ENSNBRG00000003095	cmss1	100	51.195	Neolamprologus_brichardi
MGP_SPRETEiJ_G0021724	Cmss1	100	82.857	ENSNLEG00000034172	CMSS1	100	82.857	Nomascus_leucogenys
MGP_SPRETEiJ_G0021724	Cmss1	83	65.939	ENSMEUG00000014505	CMSS1	100	65.939	Notamacropus_eugenii
MGP_SPRETEiJ_G0021724	Cmss1	100	82.437	ENSOPRG00000002986	CMSS1	100	82.437	Ochotona_princeps
MGP_SPRETEiJ_G0021724	Cmss1	100	81.786	ENSODEG00000005226	-	100	81.786	Octodon_degus
MGP_SPRETEiJ_G0021724	Cmss1	100	66.787	ENSODEG00000009446	-	100	65.343	Octodon_degus
MGP_SPRETEiJ_G0021724	Cmss1	100	69.534	ENSODEG00000001853	-	100	69.534	Octodon_degus
MGP_SPRETEiJ_G0021724	Cmss1	100	78.136	ENSODEG00000003558	-	100	78.136	Octodon_degus
MGP_SPRETEiJ_G0021724	Cmss1	73	60.891	ENSONIG00000006678	cmss1	77	60.891	Oreochromis_niloticus
MGP_SPRETEiJ_G0021724	Cmss1	92	72.441	ENSOANG00000007529	CMSS1	100	75.319	Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0021724	Cmss1	96	80.074	ENSOCUG00000025366	CMSS1	98	80.074	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0021724	Cmss1	100	51.930	ENSORLG00000020340	cmss1	100	54.196	Oryzias_latipes
MGP_SPRETEiJ_G0021724	Cmss1	76	54.976	ENSORLG00020012235	cmss1	85	54.950	Oryzias_latipes_hni
MGP_SPRETEiJ_G0021724	Cmss1	73	55.941	ENSORLG00015015551	cmss1	75	55.941	Oryzias_latipes_hsok
MGP_SPRETEiJ_G0021724	Cmss1	100	53.287	ENSOMEG00000012555	cmss1	100	53.979	Oryzias_melastigma
MGP_SPRETEiJ_G0021724	Cmss1	83	84.279	ENSOGAG00000002045	CMSS1	100	84.279	Otolemur_garnettii
MGP_SPRETEiJ_G0021724	Cmss1	96	79.259	ENSOARG00000017899	CMSS1	92	79.259	Ovis_aries
MGP_SPRETEiJ_G0021724	Cmss1	97	79.259	ENSPPAG00000038515	CMSS1	99	79.259	Pan_paniscus
MGP_SPRETEiJ_G0021724	Cmss1	100	84.286	ENSPPRG00000016767	CMSS1	100	84.286	Panthera_pardus
MGP_SPRETEiJ_G0021724	Cmss1	100	83.571	ENSPTIG00000018274	CMSS1	100	83.571	Panthera_tigris_altaica
MGP_SPRETEiJ_G0021724	Cmss1	100	81.429	ENSPTRG00000015157	CMSS1	99	82.857	Pan_troglodytes
MGP_SPRETEiJ_G0021724	Cmss1	93	80.859	ENSPANG00000019980	CMSS1	99	80.859	Papio_anubis
MGP_SPRETEiJ_G0021724	Cmss1	91	56.923	ENSPKIG00000012609	cmss1	97	57.143	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0021724	Cmss1	83	74.348	ENSPSIG00000003849	CMSS1	100	74.348	Pelodiscus_sinensis
MGP_SPRETEiJ_G0021724	Cmss1	85	56.356	ENSPMGG00000010286	cmss1	99	57.203	Periophthalmus_magnuspinnatus
MGP_SPRETEiJ_G0021724	Cmss1	100	89.324	ENSPEMG00000016384	Cmss1	100	89.324	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0021724	Cmss1	74	52.941	ENSPMAG00000001146	cmss1	99	53.465	Petromyzon_marinus
MGP_SPRETEiJ_G0021724	Cmss1	89	73.092	ENSPCIG00000015656	CMSS1	94	73.387	Phascolarctos_cinereus
MGP_SPRETEiJ_G0021724	Cmss1	100	51.399	ENSPFOG00000016849	cmss1	100	53.147	Poecilia_formosa
MGP_SPRETEiJ_G0021724	Cmss1	100	51.049	ENSPLAG00000008323	cmss1	100	52.797	Poecilia_latipinna
MGP_SPRETEiJ_G0021724	Cmss1	100	52.041	ENSPMEG00000021020	cmss1	100	52.721	Poecilia_mexicana
MGP_SPRETEiJ_G0021724	Cmss1	88	56.680	ENSPREG00000007618	cmss1	90	53.875	Poecilia_reticulata
MGP_SPRETEiJ_G0021724	Cmss1	100	82.143	ENSPPYG00000013606	CMSS1	100	82.143	Pongo_abelii
MGP_SPRETEiJ_G0021724	Cmss1	100	82.500	ENSPCOG00000020035	CMSS1	100	82.500	Propithecus_coquereli
MGP_SPRETEiJ_G0021724	Cmss1	100	73.214	ENSPVAG00000017031	CMSS1	100	73.214	Pteropus_vampyrus
MGP_SPRETEiJ_G0021724	Cmss1	91	50.936	ENSPNYG00000013428	cmss1	97	52.060	Pundamilia_nyererei
MGP_SPRETEiJ_G0021724	Cmss1	100	47.959	ENSPNAG00000007912	cmss1	100	48.814	Pygocentrus_nattereri
MGP_SPRETEiJ_G0021724	Cmss1	93	94.531	ENSRNOG00000027888	Cmss1	99	94.531	Rattus_norvegicus
MGP_SPRETEiJ_G0021724	Cmss1	100	81.429	ENSRBIG00000037931	CMSS1	100	81.429	Rhinopithecus_bieti
MGP_SPRETEiJ_G0021724	Cmss1	100	81.429	ENSRROG00000042910	CMSS1	100	81.429	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0021724	Cmss1	93	81.154	ENSSBOG00000030980	CMSS1	99	81.154	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0021724	Cmss1	89	71.937	ENSSHAG00000009321	CMSS1	99	71.937	Sarcophilus_harrisii
MGP_SPRETEiJ_G0021724	Cmss1	100	54.110	ENSSFOG00015001509	cmss1	100	54.452	Scleropages_formosus
MGP_SPRETEiJ_G0021724	Cmss1	100	51.361	ENSSMAG00000001653	cmss1	100	53.242	Scophthalmus_maximus
MGP_SPRETEiJ_G0021724	Cmss1	100	54.110	ENSSDUG00000007719	cmss1	100	54.483	Seriola_dumerili
MGP_SPRETEiJ_G0021724	Cmss1	75	63.592	ENSSLDG00000012300	cmss1	94	52.423	Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0021724	Cmss1	100	67.972	ENSSARG00000003584	CMSS1	100	67.972	Sorex_araneus
MGP_SPRETEiJ_G0021724	Cmss1	82	68.722	ENSSPUG00000003865	CMSS1	100	68.722	Sphenodon_punctatus
MGP_SPRETEiJ_G0021724	Cmss1	75	64.078	ENSSPAG00000019182	cmss1	82	55.513	Stegastes_partitus
MGP_SPRETEiJ_G0021724	Cmss1	100	83.929	ENSSSCG00000011970	CMSS1	100	83.929	Sus_scrofa
MGP_SPRETEiJ_G0021724	Cmss1	83	66.087	ENSTGUG00000013635	CMSS1	100	66.087	Taeniopygia_guttata
MGP_SPRETEiJ_G0021724	Cmss1	100	50.345	ENSTRUG00000015265	cmss1	100	51.379	Takifugu_rubripes
MGP_SPRETEiJ_G0021724	Cmss1	73	56.436	ENSTNIG00000002880	cmss1	73	56.436	Tetraodon_nigroviridis
MGP_SPRETEiJ_G0021724	Cmss1	100	55.872	ENSTBEG00000016722	CMSS1	100	55.872	Tupaia_belangeri
MGP_SPRETEiJ_G0021724	Cmss1	100	80.000	ENSTTRG00000001562	CMSS1	100	80.000	Tursiops_truncatus
MGP_SPRETEiJ_G0021724	Cmss1	97	80.657	ENSUAMG00000024209	CMSS1	100	86.607	Ursus_americanus
MGP_SPRETEiJ_G0021724	Cmss1	93	82.692	ENSUMAG00000001983	CMSS1	99	82.879	Ursus_maritimus
MGP_SPRETEiJ_G0021724	Cmss1	100	63.214	ENSVPAG00000000263	CMSS1	100	63.214	Vicugna_pacos
MGP_SPRETEiJ_G0021724	Cmss1	82	83.628	ENSVVUG00000007776	-	89	83.628	Vulpes_vulpes
MGP_SPRETEiJ_G0021724	Cmss1	88	83.401	ENSVVUG00000021647	-	100	83.401	Vulpes_vulpes
MGP_SPRETEiJ_G0021724	Cmss1	100	55.357	ENSXETG00000011858	cmss1	100	55.357	Xenopus_tropicalis
MGP_SPRETEiJ_G0021724	Cmss1	75	63.107	ENSXCOG00000018724	cmss1	69	62.871	Xiphophorus_couchianus
MGP_SPRETEiJ_G0021724	Cmss1	75	63.107	ENSXMAG00000011243	cmss1	76	62.871	Xiphophorus_maculatus