EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0021850 (Gene tree)
Gene ID: -
Gene Symbol: Scaf4
Alias: Sfrs15|Sra4|Srsf15
Full Name: SR-related CTD-associated factor 4
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Minus strand
Length: 56358 bases
Position: chr16:89575384-89631741
Accession: 2146350
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0044108	RRM_1	PF00076.22	5.9e-09	1	1
MGP_SPRETEiJ_P0044109	RRM_1	PF00076.22	5.9e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0044110	-	952	-	MGP_SPRETEiJ_P0044110	249 (aa)	-	-
MGP_SPRETEiJ_T0044108	-	4159	-	MGP_SPRETEiJ_P0044108	1181 (aa)	-	-
MGP_SPRETEiJ_T0044109	-	4153	-	MGP_SPRETEiJ_P0044109	1207 (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0021850's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0021850's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0021850	Scaf4	100	86.091	ENSG00000156304	SCAF4	100	84.319	Homo_sapiens
MGP_SPRETEiJ_G0021850	Scaf4	70	88.501	ENSAMEG00000014987	SCAF4	97	81.728	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0021850	Scaf4	99	74.093	ENSAPLG00000002509	SCAF4	59	71.627	Anas_platyrhynchos
MGP_SPRETEiJ_G0021850	Scaf4	100	85.971	ENSANAG00000037494	SCAF4	100	84.236	Aotus_nancymaae
MGP_SPRETEiJ_G0021850	Scaf4	96	89.548	ENSBTAG00000018855	SCAF4	100	83.333	Bos_taurus
MGP_SPRETEiJ_G0021850	Scaf4	100	85.526	ENSCJAG00000008993	SCAF4	100	84.016	Callithrix_jacchus
MGP_SPRETEiJ_G0021850	Scaf4	99	85.337	ENSCAFG00000008863	SCAF4	99	83.361	Canis_familiaris
MGP_SPRETEiJ_G0021850	Scaf4	99	83.467	ENSCAFG00020026019	SCAF4	93	91.324	Canis_lupus_dingo
MGP_SPRETEiJ_G0021850	Scaf4	96	89.161	ENSCHIG00000008385	SCAF4	100	82.855	Capra_hircus
MGP_SPRETEiJ_G0021850	Scaf4	99	82.322	ENSTSYG00000011344	SCAF4	98	85.276	Carlito_syrichta
MGP_SPRETEiJ_G0021850	Scaf4	100	85.851	ENSCCAG00000033727	SCAF4	100	83.662	Cebus_capucinus
MGP_SPRETEiJ_G0021850	Scaf4	100	85.663	ENSCATG00000030379	SCAF4	100	83.961	Cercocebus_atys
MGP_SPRETEiJ_G0021850	Scaf4	99	81.219	ENSCLAG00000006298	SCAF4	100	83.073	Chinchilla_lanigera
MGP_SPRETEiJ_G0021850	Scaf4	100	86.005	ENSCSAG00000009438	SCAF4	100	84.180	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0021850	Scaf4	100	86.331	ENSCANG00000029847	SCAF4	100	84.154	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0021850	Scaf4	99	89.194	ENSCGRG00001020821	Scaf4	100	88.407	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0021850	Scaf4	99	89.232	ENSCGRG00000014360	Scaf4	100	88.304	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0021850	Scaf4	98	84.662	ENSDNOG00000019014	SCAF4	94	80.921	Dasypus_novemcinctus
MGP_SPRETEiJ_G0021850	Scaf4	88	84.011	ENSETEG00000000583	SCAF4	97	82.849	Echinops_telfairi
MGP_SPRETEiJ_G0021850	Scaf4	100	85.697	ENSEASG00005007756	SCAF4	100	83.813	Equus_asinus_asinus
MGP_SPRETEiJ_G0021850	Scaf4	100	85.817	ENSECAG00000014248	SCAF4	100	83.813	Equus_caballus
MGP_SPRETEiJ_G0021850	Scaf4	55	55.932	ENSELUG00000002779	SCAF8	61	69.565	Esox_lucius
MGP_SPRETEiJ_G0021850	Scaf4	100	85.216	ENSFCAG00000002228	SCAF4	100	83.744	Felis_catus
MGP_SPRETEiJ_G0021850	Scaf4	99	84.171	ENSFDAG00000017780	SCAF4	100	83.005	Fukomys_damarensis
MGP_SPRETEiJ_G0021850	Scaf4	55	60.075	ENSFHEG00000007634	scaf4b	52	79.137	Fundulus_heteroclitus
MGP_SPRETEiJ_G0021850	Scaf4	99	75.321	ENSGALG00000033965	SCAF4	59	71.884	Gallus_gallus
MGP_SPRETEiJ_G0021850	Scaf4	66	54.523	ENSGACG00000020580	scaf4a	55	70.732	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0021850	Scaf4	93	86.667	ENSGGOG00000015557	SCAF4	99	80.498	Gorilla_gorilla
MGP_SPRETEiJ_G0021850	Scaf4	65	58.824	ENSIPUG00000011285	scaf4	52	74.390	Ictalurus_punctatus
MGP_SPRETEiJ_G0021850	Scaf4	99	87.290	ENSSTOG00000004450	SCAF4	100	79.181	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0021850	Scaf4	98	84.754	ENSJJAG00000019447	Scaf4	65	84.211	Jaculus_jaculus
MGP_SPRETEiJ_G0021850	Scaf4	57	59.770	ENSKMAG00000005742	scaf4b	54	75.159	Kryptolebias_marmoratus
MGP_SPRETEiJ_G0021850	Scaf4	97	55.858	ENSLACG00000013913	SCAF4	59	64.831	Latimeria_chalumnae
MGP_SPRETEiJ_G0021850	Scaf4	99	82.576	ENSLAFG00000010710	SCAF4	94	90.909	Loxodonta_africana
MGP_SPRETEiJ_G0021850	Scaf4	100	85.714	ENSMFAG00000037668	SCAF4	100	83.918	Macaca_fascicularis
MGP_SPRETEiJ_G0021850	Scaf4	100	85.595	ENSMMUG00000001712	SCAF4	100	83.837	Macaca_mulatta
MGP_SPRETEiJ_G0021850	Scaf4	100	85.850	ENSMNEG00000032966	SCAF4	100	83.850	Macaca_nemestrina
MGP_SPRETEiJ_G0021850	Scaf4	99	86.038	ENSMLEG00000039674	SCAF4	100	83.842	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0021850	Scaf4	99	75.000	ENSMGAG00000014515	SCAF4	59	72.045	Meleagris_gallopavo
MGP_SPRETEiJ_G0021850	Scaf4	92	89.683	ENSMAUG00000013307	Scaf4	100	84.206	Mesocricetus_auratus
MGP_SPRETEiJ_G0021850	Scaf4	100	86.811	ENSMICG00000005256	SCAF4	100	84.059	Microcebus_murinus
MGP_SPRETEiJ_G0021850	Scaf4	100	91.549	ENSMOCG00000012087	Scaf4	100	90.969	Microtus_ochrogaster
MGP_SPRETEiJ_G0021850	Scaf4	100	78.462	ENSMODG00000021040	SCAF4	99	76.089	Monodelphis_domestica
MGP_SPRETEiJ_G0021850	Scaf4	100	98.148	MGP_CAROLIEiJ_G0020944	Scaf4	100	98.148	Mus_caroli
MGP_SPRETEiJ_G0021850	Scaf4	100	97.451	ENSMUSG00000022983	Scaf4	100	97.451	Mus_musculus
MGP_SPRETEiJ_G0021850	Scaf4	100	95.748	MGP_PahariEiJ_G0016649	Scaf4	100	95.748	Mus_pahari
MGP_SPRETEiJ_G0021850	Scaf4	100	85.036	ENSMPUG00000001078	SCAF4	100	82.195	Mustela_putorius_furo
MGP_SPRETEiJ_G0021850	Scaf4	99	73.792	ENSMLUG00000011472	SCAF4	78	78.556	Myotis_lucifugus
MGP_SPRETEiJ_G0021850	Scaf4	99	85.240	ENSNGAG00000005214	Scaf4	99	84.992	Nannospalax_galili
MGP_SPRETEiJ_G0021850	Scaf4	100	84.154	ENSNLEG00000003569	SCAF4	100	84.319	Nomascus_leucogenys
MGP_SPRETEiJ_G0021850	Scaf4	74	88.043	ENSOPRG00000007016	SCAF4	77	88.043	Ochotona_princeps
MGP_SPRETEiJ_G0021850	Scaf4	95	85.825	ENSOCUG00000008336	SCAF4	100	80.999	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0021850	Scaf4	99	79.238	ENSOGAG00000014653	SCAF4	99	80.640	Otolemur_garnettii
MGP_SPRETEiJ_G0021850	Scaf4	94	89.032	ENSOARG00000013894	SCAF4	99	82.169	Ovis_aries
MGP_SPRETEiJ_G0021850	Scaf4	100	86.091	ENSPPAG00000028535	SCAF4	100	84.319	Pan_paniscus
MGP_SPRETEiJ_G0021850	Scaf4	99	85.096	ENSPPRG00000000635	SCAF4	100	83.513	Panthera_pardus
MGP_SPRETEiJ_G0021850	Scaf4	99	82.578	ENSPTIG00000021578	SCAF4	99	78.778	Panthera_tigris_altaica
MGP_SPRETEiJ_G0021850	Scaf4	100	86.091	ENSPTRG00000013848	SCAF4	100	84.319	Pan_troglodytes
MGP_SPRETEiJ_G0021850	Scaf4	100	85.714	ENSPANG00000017332	SCAF4	100	83.918	Papio_anubis
MGP_SPRETEiJ_G0021850	Scaf4	99	75.597	ENSPSIG00000014242	SCAF4	57	83.959	Pelodiscus_sinensis
MGP_SPRETEiJ_G0021850	Scaf4	85	82.753	ENSPCIG00000028183	SCAF4	91	79.355	Phascolarctos_cinereus
MGP_SPRETEiJ_G0021850	Scaf4	69	52.064	ENSPFOG00000017156	scaf4a	53	73.780	Poecilia_formosa
MGP_SPRETEiJ_G0021850	Scaf4	57	61.481	ENSPLAG00000001972	scaf4a	64	74.390	Poecilia_latipinna
MGP_SPRETEiJ_G0021850	Scaf4	100	85.971	ENSPPYG00000011355	SCAF4	100	84.154	Pongo_abelii
MGP_SPRETEiJ_G0021850	Scaf4	93	82.493	ENSPCAG00000009998	SCAF4	100	72.131	Procavia_capensis
MGP_SPRETEiJ_G0021850	Scaf4	100	86.260	ENSPCOG00000018710	SCAF4	100	83.852	Propithecus_coquereli
MGP_SPRETEiJ_G0021850	Scaf4	96	88.760	ENSPVAG00000005220	SCAF4	100	81.841	Pteropus_vampyrus
MGP_SPRETEiJ_G0021850	Scaf4	100	91.750	ENSRNOG00000002104	Scaf4	100	92.250	Rattus_norvegicus
MGP_SPRETEiJ_G0021850	Scaf4	94	89.032	ENSRBIG00000040007	SCAF4	93	88.000	Rhinopithecus_bieti
MGP_SPRETEiJ_G0021850	Scaf4	100	86.667	ENSRROG00000029488	SCAF4	100	84.236	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0021850	Scaf4	100	78.292	ENSSHAG00000001581	SCAF4	99	81.677	Sarcophilus_harrisii
MGP_SPRETEiJ_G0021850	Scaf4	61	57.621	ENSSMAG00000003738	scaf4b	54	72.785	Scophthalmus_maximus
MGP_SPRETEiJ_G0021850	Scaf4	97	81.984	ENSSARG00000009994	SCAF4	99	80.442	Sorex_araneus
MGP_SPRETEiJ_G0021850	Scaf4	100	84.772	ENSSSCG00000021023	SCAF4	100	81.276	Sus_scrofa
MGP_SPRETEiJ_G0021850	Scaf4	75	71.597	ENSTGUG00000013464	SCAF4	61	71.191	Taeniopygia_guttata
MGP_SPRETEiJ_G0021850	Scaf4	99	84.697	ENSTTRG00000010963	SCAF4	100	82.353	Tursiops_truncatus
MGP_SPRETEiJ_G0021850	Scaf4	100	83.290	ENSUAMG00000008860	SCAF4	100	81.183	Ursus_americanus
MGP_SPRETEiJ_G0021850	Scaf4	94	87.855	ENSUMAG00000016962	SCAF4	94	88.889	Ursus_maritimus
MGP_SPRETEiJ_G0021850	Scaf4	99	85.337	ENSVVUG00000002953	SCAF4	100	83.375	Vulpes_vulpes