EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0021854 (Gene tree)
Gene ID: -
Gene Symbol: Urb1
Alias: 4921511H13Rik|5730405K23Rik
Full Name: URB1 ribosome biogenesis 1 homolog (S. cerevisiae)
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Minus strand
Length: 58875 bases
Position: chr16:90147258-90206132
Accession: 2146468
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0044120	Npa1	PF11707.8	1.1e-85	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0044124	-	661	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0044122	-	2183	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0044123	-	1219	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0044120	-	7340	-	MGP_SPRETEiJ_P0044120	2277 (aa)	-	-
MGP_SPRETEiJ_T0044121	-	809	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0021854's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0021854's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0021854	Urb1	99	76.224	ENSG00000142207	URB1	99	76.100	Homo_sapiens
MGP_SPRETEiJ_G0021854	Urb1	99	42.236	ENSAPOG00000020308	urb1	99	42.236	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0021854	Urb1	99	73.415	ENSAMEG00000011998	URB1	99	73.415	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0021854	Urb1	94	43.939	ENSACIG00000003248	urb1	96	44.197	Amphilophus_citrinellus
MGP_SPRETEiJ_G0021854	Urb1	99	40.496	ENSAOCG00000010364	urb1	99	40.539	Amphiprion_ocellaris
MGP_SPRETEiJ_G0021854	Urb1	99	42.151	ENSAPEG00000010758	urb1	99	42.194	Amphiprion_percula
MGP_SPRETEiJ_G0021854	Urb1	97	43.498	ENSATEG00000011790	urb1	96	43.498	Anabas_testudineus
MGP_SPRETEiJ_G0021854	Urb1	97	54.725	ENSAPLG00000012791	URB1	100	54.770	Anas_platyrhynchos
MGP_SPRETEiJ_G0021854	Urb1	98	52.164	ENSACAG00000002817	URB1	99	51.696	Anolis_carolinensis
MGP_SPRETEiJ_G0021854	Urb1	99	75.715	ENSANAG00000024617	URB1	99	75.715	Aotus_nancymaae
MGP_SPRETEiJ_G0021854	Urb1	99	44.000	ENSACLG00000024865	urb1	99	44.000	Astatotilapia_calliptera
MGP_SPRETEiJ_G0021854	Urb1	99	39.939	ENSAMXG00000012306	urb1	99	40.009	Astyanax_mexicanus
MGP_SPRETEiJ_G0021854	Urb1	99	70.508	ENSBTAG00000012412	URB1	99	70.534	Bos_taurus
MGP_SPRETEiJ_G0021854	Urb1	99	75.439	ENSCJAG00000009118	URB1	99	75.439	Callithrix_jacchus
MGP_SPRETEiJ_G0021854	Urb1	99	73.936	ENSCAFG00000008892	URB1	99	73.936	Canis_familiaris
MGP_SPRETEiJ_G0021854	Urb1	99	72.755	ENSCAFG00020025994	-	99	72.711	Canis_lupus_dingo
MGP_SPRETEiJ_G0021854	Urb1	99	73.724	ENSCAFG00020025987	-	99	73.647	Canis_lupus_dingo
MGP_SPRETEiJ_G0021854	Urb1	99	70.127	ENSCHIG00000015645	URB1	99	70.171	Capra_hircus
MGP_SPRETEiJ_G0021854	Urb1	99	75.385	ENSTSYG00000013286	URB1	99	75.385	Carlito_syrichta
MGP_SPRETEiJ_G0021854	Urb1	97	73.514	ENSCAPG00000015589	URB1	99	73.286	Cavia_aperea
MGP_SPRETEiJ_G0021854	Urb1	99	74.493	ENSCPOG00000006748	URB1	99	74.493	Cavia_porcellus
MGP_SPRETEiJ_G0021854	Urb1	99	75.748	ENSCCAG00000021299	URB1	99	75.748	Cebus_capucinus
MGP_SPRETEiJ_G0021854	Urb1	99	76.100	ENSCATG00000042630	URB1	99	76.100	Cercocebus_atys
MGP_SPRETEiJ_G0021854	Urb1	99	75.914	ENSCLAG00000005262	URB1	99	75.914	Chinchilla_lanigera
MGP_SPRETEiJ_G0021854	Urb1	99	74.715	ENSCSAG00000009584	URB1	99	74.715	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0021854	Urb1	99	56.776	ENSCPBG00000006454	URB1	99	56.776	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0021854	Urb1	99	75.880	ENSCANG00000031088	URB1	99	75.880	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0021854	Urb1	98	85.995	ENSCGRG00001010616	Urb1	100	85.689	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0021854	Urb1	98	85.515	ENSCGRG00000015840	Urb1	100	85.515	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0021854	Urb1	97	48.469	ENSCSEG00000012616	urb1	99	48.469	Cynoglossus_semilaevis
MGP_SPRETEiJ_G0021854	Urb1	92	51.207	ENSCVAG00000009076	urb1	98	51.949	Cyprinodon_variegatus
MGP_SPRETEiJ_G0021854	Urb1	99	42.970	ENSDARG00000060308	urb1	99	43.320	Danio_rerio
MGP_SPRETEiJ_G0021854	Urb1	85	73.760	ENSDNOG00000015586	URB1	99	73.760	Dasypus_novemcinctus
MGP_SPRETEiJ_G0021854	Urb1	99	76.046	ENSDORG00000006735	Urb1	99	76.046	Dipodomys_ordii
MGP_SPRETEiJ_G0021854	Urb1	92	74.000	ENSETEG00000009080	URB1	92	74.000	Echinops_telfairi
MGP_SPRETEiJ_G0021854	Urb1	99	73.575	ENSEASG00005007711	URB1	99	73.239	Equus_asinus_asinus
MGP_SPRETEiJ_G0021854	Urb1	97	81.540	ENSECAG00000013206	URB1	99	81.540	Equus_caballus
MGP_SPRETEiJ_G0021854	Urb1	55	82.573	ENSEEUG00000003626	-	55	82.573	Erinaceus_europaeus
MGP_SPRETEiJ_G0021854	Urb1	98	43.593	ENSELUG00000020516	urb1	98	43.637	Esox_lucius
MGP_SPRETEiJ_G0021854	Urb1	99	73.404	ENSFCAG00000002177	URB1	99	73.471	Felis_catus
MGP_SPRETEiJ_G0021854	Urb1	97	49.890	ENSFALG00000004636	URB1	99	50.110	Ficedula_albicollis
MGP_SPRETEiJ_G0021854	Urb1	99	75.782	ENSFDAG00000007288	URB1	95	75.715	Fukomys_damarensis
MGP_SPRETEiJ_G0021854	Urb1	98	41.249	ENSFHEG00000000202	urb1	98	42.116	Fundulus_heteroclitus
MGP_SPRETEiJ_G0021854	Urb1	90	46.749	ENSGMOG00000001838	urb1	91	46.749	Gadus_morhua
MGP_SPRETEiJ_G0021854	Urb1	99	54.819	ENSGALG00000015887	URB1	99	54.819	Gallus_gallus
MGP_SPRETEiJ_G0021854	Urb1	97	52.356	ENSGAFG00000020694	urb1	98	52.376	Gambusia_affinis
MGP_SPRETEiJ_G0021854	Urb1	98	43.673	ENSGACG00000011703	urb1	99	43.673	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0021854	Urb1	99	56.228	ENSGAGG00000022544	URB1	99	56.228	Gopherus_agassizii
MGP_SPRETEiJ_G0021854	Urb1	99	76.144	ENSGGOG00000000285	URB1	99	76.144	Gorilla_gorilla
MGP_SPRETEiJ_G0021854	Urb1	99	43.970	ENSHBUG00000001904	urb1	99	43.970	Haplochromis_burtoni
MGP_SPRETEiJ_G0021854	Urb1	99	74.262	ENSHGLG00000004907	URB1	99	74.262	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0021854	Urb1	99	74.714	ENSHGLG00100010749	URB1	99	74.714	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0021854	Urb1	72	46.705	ENSHCOG00000018683	urb1	97	47.093	Hippocampus_comes
MGP_SPRETEiJ_G0021854	Urb1	99	39.547	ENSIPUG00000014721	urb1	99	39.505	Ictalurus_punctatus
MGP_SPRETEiJ_G0021854	Urb1	99	75.782	ENSSTOG00000004539	URB1	99	75.782	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0021854	Urb1	98	45.176	ENSKMAG00000006001	urb1	98	46.795	Kryptolebias_marmoratus
MGP_SPRETEiJ_G0021854	Urb1	97	40.858	ENSLBEG00000027208	urb1	99	49.736	Labrus_bergylta
MGP_SPRETEiJ_G0021854	Urb1	99	47.237	ENSLACG00000017059	URB1	100	47.282	Latimeria_chalumnae
MGP_SPRETEiJ_G0021854	Urb1	97	45.333	ENSLOCG00000009190	urb1	97	45.333	Lepisosteus_oculatus
MGP_SPRETEiJ_G0021854	Urb1	99	71.366	ENSLAFG00000010407	URB1	99	71.366	Loxodonta_africana
MGP_SPRETEiJ_G0021854	Urb1	99	75.836	ENSMFAG00000034391	URB1	97	75.836	Macaca_fascicularis
MGP_SPRETEiJ_G0021854	Urb1	99	75.704	ENSMMUG00000010295	URB1	99	75.704	Macaca_mulatta
MGP_SPRETEiJ_G0021854	Urb1	99	74.527	ENSMNEG00000032981	URB1	99	74.527	Macaca_nemestrina
MGP_SPRETEiJ_G0021854	Urb1	99	75.924	ENSMLEG00000041435	URB1	99	75.924	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0021854	Urb1	99	42.002	ENSMAMG00000011238	urb1	99	42.002	Mastacembelus_armatus
MGP_SPRETEiJ_G0021854	Urb1	99	41.233	ENSMZEG00005011862	urb1	99	41.233	Maylandia_zebra
MGP_SPRETEiJ_G0021854	Urb1	98	54.711	ENSMGAG00000014512	URB1	99	54.711	Meleagris_gallopavo
MGP_SPRETEiJ_G0021854	Urb1	93	82.774	ENSMAUG00000010516	Urb1	100	82.920	Mesocricetus_auratus
MGP_SPRETEiJ_G0021854	Urb1	99	75.308	ENSMICG00000016424	URB1	99	75.308	Microcebus_murinus
MGP_SPRETEiJ_G0021854	Urb1	100	84.592	ENSMOCG00000012613	Urb1	99	84.592	Microtus_ochrogaster
MGP_SPRETEiJ_G0021854	Urb1	99	60.822	ENSMODG00000021076	URB1	100	60.822	Monodelphis_domestica
MGP_SPRETEiJ_G0021854	Urb1	96	42.890	ENSMALG00000017411	urb1	97	51.471	Monopterus_albus
MGP_SPRETEiJ_G0021854	Urb1	99	97.144	MGP_CAROLIEiJ_G0020948	Urb1	99	97.144	Mus_caroli
MGP_SPRETEiJ_G0021854	Urb1	100	98.463	ENSMUSG00000039929	Urb1	100	98.463	Mus_musculus
MGP_SPRETEiJ_G0021854	Urb1	99	95.079	MGP_PahariEiJ_G0016653	Urb1	99	95.079	Mus_pahari
MGP_SPRETEiJ_G0021854	Urb1	99	72.755	ENSMPUG00000001123	URB1	99	72.723	Mustela_putorius_furo
MGP_SPRETEiJ_G0021854	Urb1	99	77.602	ENSNGAG00000001905	Urb1	100	77.558	Nannospalax_galili
MGP_SPRETEiJ_G0021854	Urb1	81	44.773	ENSNBRG00000001049	urb1	98	45.283	Neolamprologus_brichardi
MGP_SPRETEiJ_G0021854	Urb1	99	74.107	ENSNLEG00000026872	URB1	99	73.988	Nomascus_leucogenys
MGP_SPRETEiJ_G0021854	Urb1	95	56.214	ENSMEUG00000010828	URB1	96	56.558	Notamacropus_eugenii
MGP_SPRETEiJ_G0021854	Urb1	99	67.942	ENSOPRG00000013482	URB1	99	67.942	Ochotona_princeps
MGP_SPRETEiJ_G0021854	Urb1	99	74.417	ENSODEG00000002587	URB1	99	74.417	Octodon_degus
MGP_SPRETEiJ_G0021854	Urb1	99	44.091	ENSONIG00000005599	urb1	99	44.080	Oreochromis_niloticus
MGP_SPRETEiJ_G0021854	Urb1	99	73.844	ENSOCUG00000009381	URB1	99	73.844	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0021854	Urb1	99	43.102	ENSORLG00000003429	urb1	99	43.045	Oryzias_latipes
MGP_SPRETEiJ_G0021854	Urb1	99	43.076	ENSORLG00020013785	urb1	99	43.076	Oryzias_latipes_hni
MGP_SPRETEiJ_G0021854	Urb1	99	41.897	ENSORLG00015019421	urb1	97	45.955	Oryzias_latipes_hsok
MGP_SPRETEiJ_G0021854	Urb1	76	50.410	ENSOMEG00000002094	urb1	97	50.410	Oryzias_melastigma
MGP_SPRETEiJ_G0021854	Urb1	99	75.044	ENSOGAG00000017140	URB1	99	75.044	Otolemur_garnettii
MGP_SPRETEiJ_G0021854	Urb1	97	71.643	ENSOARG00000013679	URB1	99	71.560	Ovis_aries
MGP_SPRETEiJ_G0021854	Urb1	99	76.408	ENSPPAG00000003423	URB1	99	76.408	Pan_paniscus
MGP_SPRETEiJ_G0021854	Urb1	99	73.821	ENSPPRG00000023131	URB1	99	73.821	Panthera_pardus
MGP_SPRETEiJ_G0021854	Urb1	91	72.553	ENSPTIG00000016125	URB1	98	72.553	Panthera_tigris_altaica
MGP_SPRETEiJ_G0021854	Urb1	99	76.276	ENSPTRG00000013852	URB1	99	76.276	Pan_troglodytes
MGP_SPRETEiJ_G0021854	Urb1	99	76.056	ENSPANG00000021964	URB1	99	76.056	Papio_anubis
MGP_SPRETEiJ_G0021854	Urb1	97	45.882	ENSPKIG00000003683	urb1	96	45.927	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0021854	Urb1	99	85.777	ENSPEMG00000021205	Urb1	99	85.777	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0021854	Urb1	77	33.515	ENSPMAG00000009733	URB1	100	33.281	Petromyzon_marinus
MGP_SPRETEiJ_G0021854	Urb1	99	60.717	ENSPCIG00000016350	URB1	100	60.717	Phascolarctos_cinereus
MGP_SPRETEiJ_G0021854	Urb1	95	43.066	ENSPLAG00000004371	urb1	99	42.974	Poecilia_latipinna
MGP_SPRETEiJ_G0021854	Urb1	99	43.546	ENSPMEG00000006634	urb1	99	43.546	Poecilia_mexicana
MGP_SPRETEiJ_G0021854	Urb1	98	44.105	ENSPREG00000013453	urb1	98	44.105	Poecilia_reticulata
MGP_SPRETEiJ_G0021854	Urb1	99	75.827	ENSPPYG00000011359	URB1	99	75.704	Pongo_abelii
MGP_SPRETEiJ_G0021854	Urb1	99	62.643	ENSPCAG00000007430	URB1	99	62.643	Procavia_capensis
MGP_SPRETEiJ_G0021854	Urb1	99	76.134	ENSPCOG00000022695	URB1	99	76.232	Propithecus_coquereli
MGP_SPRETEiJ_G0021854	Urb1	99	72.234	ENSPVAG00000000889	URB1	99	72.234	Pteropus_vampyrus
MGP_SPRETEiJ_G0021854	Urb1	99	42.870	ENSPNYG00000010589	urb1	99	42.870	Pundamilia_nyererei
MGP_SPRETEiJ_G0021854	Urb1	99	39.582	ENSPNAG00000019324	urb1	99	39.800	Pygocentrus_nattereri
MGP_SPRETEiJ_G0021854	Urb1	99	90.909	ENSRNOG00000002080	Urb1	99	91.041	Rattus_norvegicus
MGP_SPRETEiJ_G0021854	Urb1	99	75.704	ENSRBIG00000033122	URB1	99	75.704	Rhinopithecus_bieti
MGP_SPRETEiJ_G0021854	Urb1	99	75.748	ENSRROG00000040237	URB1	99	75.748	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0021854	Urb1	99	76.155	ENSSBOG00000027672	URB1	99	76.155	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0021854	Urb1	99	60.613	ENSSHAG00000005140	URB1	100	60.613	Sarcophilus_harrisii
MGP_SPRETEiJ_G0021854	Urb1	93	45.373	ENSSFOG00015000339	urb1	99	45.395	Scleropages_formosus
MGP_SPRETEiJ_G0021854	Urb1	99	43.095	ENSSMAG00000003782	urb1	99	42.789	Scophthalmus_maximus
MGP_SPRETEiJ_G0021854	Urb1	99	43.715	ENSSDUG00000012313	urb1	99	43.579	Seriola_dumerili
MGP_SPRETEiJ_G0021854	Urb1	99	43.467	ENSSLDG00000023179	urb1	99	43.529	Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0021854	Urb1	99	52.875	ENSSPUG00000012447	URB1	99	52.875	Sphenodon_punctatus
MGP_SPRETEiJ_G0021854	Urb1	99	43.514	ENSSPAG00000006325	urb1	99	43.514	Stegastes_partitus
MGP_SPRETEiJ_G0021854	Urb1	99	72.188	ENSSSCG00000032024	URB1	99	72.188	Sus_scrofa
MGP_SPRETEiJ_G0021854	Urb1	73	56.828	ENSTGUG00000013442	URB1	100	56.828	Taeniopygia_guttata
MGP_SPRETEiJ_G0021854	Urb1	99	43.064	ENSTRUG00000009372	urb1	99	42.838	Takifugu_rubripes
MGP_SPRETEiJ_G0021854	Urb1	99	42.582	ENSTNIG00000016277	urb1	99	42.495	Tetraodon_nigroviridis
MGP_SPRETEiJ_G0021854	Urb1	81	78.963	ENSTBEG00000010044	URB1	81	78.963	Tupaia_belangeri
MGP_SPRETEiJ_G0021854	Urb1	90	74.113	ENSTTRG00000007712	URB1	92	74.426	Tursiops_truncatus
MGP_SPRETEiJ_G0021854	Urb1	99	73.371	ENSUAMG00000012231	URB1	99	73.339	Ursus_americanus
MGP_SPRETEiJ_G0021854	Urb1	91	75.124	ENSUMAG00000017419	URB1	97	75.349	Ursus_maritimus
MGP_SPRETEiJ_G0021854	Urb1	68	84.921	ENSVPAG00000001164	URB1	68	84.921	Vicugna_pacos
MGP_SPRETEiJ_G0021854	Urb1	99	73.703	ENSVVUG00000000551	URB1	99	73.670	Vulpes_vulpes
MGP_SPRETEiJ_G0021854	Urb1	99	48.640	ENSXETG00000009895	urb1	99	48.640	Xenopus_tropicalis
MGP_SPRETEiJ_G0021854	Urb1	99	41.293	ENSXCOG00000005500	urb1	99	41.293	Xiphophorus_couchianus
MGP_SPRETEiJ_G0021854	Urb1	99	41.490	ENSXMAG00000007253	urb1	99	41.490	Xiphophorus_maculatus