EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0021975 (Gene tree)
Gene ID: -
Gene Symbol: Pnldc1
Alias: LOC240023
Full Name: poly(A)-specific ribonuclease (PARN)-like domain containing 1
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Minus strand
Length: 20557 bases
Position: chr17:9925072-9945628
Accession: 2685159
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0044613	CAF1	PF04857.20	2.6e-79	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0044613	-	1689	-	MGP_SPRETEiJ_P0044613	531 (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0021975's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0021975's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0021975	Pnldc1	99	85.795	ENSG00000146453	PNLDC1	99	85.795	Homo_sapiens
MGP_SPRETEiJ_G0021975	Pnldc1	99	85.822	ENSAMEG00000015371	PNLDC1	99	85.822	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0021975	Pnldc1	95	59.454	ENSAPLG00000007014	PNLDC1	98	59.454	Anas_platyrhynchos
MGP_SPRETEiJ_G0021975	Pnldc1	99	60.038	ENSACAG00000013667	PNLDC1	99	60.038	Anolis_carolinensis
MGP_SPRETEiJ_G0021975	Pnldc1	100	85.499	ENSANAG00000034713	PNLDC1	100	86.497	Aotus_nancymaae
MGP_SPRETEiJ_G0021975	Pnldc1	95	86.653	ENSBTAG00000015166	PNLDC1	95	86.653	Bos_taurus
MGP_SPRETEiJ_G0021975	Pnldc1	100	84.181	ENSCJAG00000011865	PNLDC1	100	84.181	Callithrix_jacchus
MGP_SPRETEiJ_G0021975	Pnldc1	100	87.571	ENSCAFG00000000740	PNLDC1	100	87.571	Canis_familiaris
MGP_SPRETEiJ_G0021975	Pnldc1	100	85.178	ENSCAFG00020017742	PNLDC1	100	85.178	Canis_lupus_dingo
MGP_SPRETEiJ_G0021975	Pnldc1	100	84.023	ENSCHIG00000003141	PNLDC1	100	84.023	Capra_hircus
MGP_SPRETEiJ_G0021975	Pnldc1	100	82.674	ENSTSYG00000005606	PNLDC1	100	82.674	Carlito_syrichta
MGP_SPRETEiJ_G0021975	Pnldc1	100	62.406	ENSCAPG00000011893	PNLDC1	100	62.406	Cavia_aperea
MGP_SPRETEiJ_G0021975	Pnldc1	100	79.511	ENSCPOG00000019565	PNLDC1	100	79.511	Cavia_porcellus
MGP_SPRETEiJ_G0021975	Pnldc1	100	85.499	ENSCCAG00000026232	PNLDC1	100	85.499	Cebus_capucinus
MGP_SPRETEiJ_G0021975	Pnldc1	100	85.687	ENSCATG00000033196	PNLDC1	100	85.687	Cercocebus_atys
MGP_SPRETEiJ_G0021975	Pnldc1	99	85.227	ENSCLAG00000003228	PNLDC1	99	85.227	Chinchilla_lanigera
MGP_SPRETEiJ_G0021975	Pnldc1	95	84.479	ENSCSAG00000012478	PNLDC1	98	84.479	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0021975	Pnldc1	96	65.625	ENSCPBG00000004050	PNLDC1	100	65.625	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0021975	Pnldc1	95	85.375	ENSCANG00000043076	PNLDC1	97	85.375	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0021975	Pnldc1	100	69.115	ENSCGRG00001011981	-	99	69.115	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0021975	Pnldc1	100	85.876	ENSCGRG00001007470	-	99	85.876	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0021975	Pnldc1	100	85.876	ENSCGRG00000010221	-	99	85.876	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0021975	Pnldc1	100	71.375	ENSCGRG00000003103	-	99	71.375	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0021975	Pnldc1	100	85.150	ENSDNOG00000013709	PNLDC1	100	85.150	Dasypus_novemcinctus
MGP_SPRETEiJ_G0021975	Pnldc1	100	80.150	ENSDORG00000011517	Pnldc1	99	88.498	Dipodomys_ordii
MGP_SPRETEiJ_G0021975	Pnldc1	93	75.911	ENSETEG00000007587	PNLDC1	99	75.911	Echinops_telfairi
MGP_SPRETEiJ_G0021975	Pnldc1	97	30.813	ENSEBUG00000008118	PNLDC1	97	30.813	Eptatretus_burgeri
MGP_SPRETEiJ_G0021975	Pnldc1	100	79.259	ENSEASG00005019029	PNLDC1	100	79.259	Equus_asinus_asinus
MGP_SPRETEiJ_G0021975	Pnldc1	100	87.194	ENSECAG00000012898	PNLDC1	100	87.194	Equus_caballus
MGP_SPRETEiJ_G0021975	Pnldc1	67	75.000	ENSEEUG00000005717	-	86	75.000	Erinaceus_europaeus
MGP_SPRETEiJ_G0021975	Pnldc1	100	87.382	ENSFCAG00000002848	PNLDC1	100	87.382	Felis_catus
MGP_SPRETEiJ_G0021975	Pnldc1	94	57.654	ENSFALG00000012081	PNLDC1	99	57.654	Ficedula_albicollis
MGP_SPRETEiJ_G0021975	Pnldc1	100	86.252	ENSFDAG00000021334	PNLDC1	100	86.252	Fukomys_damarensis
MGP_SPRETEiJ_G0021975	Pnldc1	79	59.620	ENSGALG00000011624	PNLDC1	82	59.620	Gallus_gallus
MGP_SPRETEiJ_G0021975	Pnldc1	99	65.530	ENSGAGG00000015276	PNLDC1	100	66.736	Gopherus_agassizii
MGP_SPRETEiJ_G0021975	Pnldc1	100	85.311	ENSGGOG00000014077	PNLDC1	100	85.311	Gorilla_gorilla
MGP_SPRETEiJ_G0021975	Pnldc1	100	86.252	ENSHGLG00000006889	PNLDC1	100	86.252	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0021975	Pnldc1	100	86.252	ENSHGLG00100018275	PNLDC1	100	86.252	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0021975	Pnldc1	99	89.205	ENSSTOG00000005595	PNLDC1	99	89.205	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0021975	Pnldc1	99	83.176	ENSJJAG00000009937	Pnldc1	99	83.176	Jaculus_jaculus
MGP_SPRETEiJ_G0021975	Pnldc1	59	85.397	ENSLAFG00000030189	PNLDC1	92	85.397	Loxodonta_africana
MGP_SPRETEiJ_G0021975	Pnldc1	100	85.687	ENSMFAG00000041296	PNLDC1	100	85.687	Macaca_fascicularis
MGP_SPRETEiJ_G0021975	Pnldc1	100	85.687	ENSMMUG00000004181	PNLDC1	100	85.687	Macaca_mulatta
MGP_SPRETEiJ_G0021975	Pnldc1	100	85.499	ENSMNEG00000034271	PNLDC1	100	85.499	Macaca_nemestrina
MGP_SPRETEiJ_G0021975	Pnldc1	100	82.486	ENSMLEG00000044059	PNLDC1	100	82.486	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0021975	Pnldc1	95	58.300	ENSMGAG00000012470	PNLDC1	97	58.300	Meleagris_gallopavo
MGP_SPRETEiJ_G0021975	Pnldc1	99	69.115	ENSMAUG00000012298	Pnldc1	100	69.115	Mesocricetus_auratus
MGP_SPRETEiJ_G0021975	Pnldc1	100	85.311	ENSMICG00000008021	PNLDC1	100	85.311	Microcebus_murinus
MGP_SPRETEiJ_G0021975	Pnldc1	100	93.058	ENSMOCG00000014287	Pnldc1	100	93.058	Microtus_ochrogaster
MGP_SPRETEiJ_G0021975	Pnldc1	99	75.712	ENSMODG00000007420	PNLDC1	99	75.712	Monodelphis_domestica
MGP_SPRETEiJ_G0021975	Pnldc1	100	98.117	MGP_CAROLIEiJ_G0021045	Pnldc1	100	98.117	Mus_caroli
MGP_SPRETEiJ_G0021975	Pnldc1	100	98.305	ENSMUSG00000073460	Pnldc1	100	98.305	Mus_musculus
MGP_SPRETEiJ_G0021975	Pnldc1	100	96.422	MGP_PahariEiJ_G0023361	Pnldc1	100	96.422	Mus_pahari
MGP_SPRETEiJ_G0021975	Pnldc1	99	87.335	ENSMPUG00000004920	PNLDC1	99	87.335	Mustela_putorius_furo
MGP_SPRETEiJ_G0021975	Pnldc1	100	85.499	ENSMLUG00000000747	PNLDC1	100	85.499	Myotis_lucifugus
MGP_SPRETEiJ_G0021975	Pnldc1	100	93.974	ENSNGAG00000017714	Pnldc1	99	93.974	Nannospalax_galili
MGP_SPRETEiJ_G0021975	Pnldc1	97	83.333	ENSNLEG00000011282	PNLDC1	99	83.333	Nomascus_leucogenys
MGP_SPRETEiJ_G0021975	Pnldc1	60	62.187	ENSMEUG00000011926	-	64	62.187	Notamacropus_eugenii
MGP_SPRETEiJ_G0021975	Pnldc1	54	65.278	ENSMEUG00000014042	-	100	65.278	Notamacropus_eugenii
MGP_SPRETEiJ_G0021975	Pnldc1	79	86.364	ENSOPRG00000003813	PNLDC1	79	86.364	Ochotona_princeps
MGP_SPRETEiJ_G0021975	Pnldc1	100	86.629	ENSODEG00000008047	PNLDC1	100	86.629	Octodon_degus
MGP_SPRETEiJ_G0021975	Pnldc1	99	57.925	ENSOANG00000012199	PNLDC1	99	59.168	Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0021975	Pnldc1	100	86.817	ENSOCUG00000013867	PNLDC1	100	86.817	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0021975	Pnldc1	99	87.121	ENSOGAG00000007331	PNLDC1	99	87.121	Otolemur_garnettii
MGP_SPRETEiJ_G0021975	Pnldc1	100	83.992	ENSOARG00000004585	PNLDC1	100	83.992	Ovis_aries
MGP_SPRETEiJ_G0021975	Pnldc1	100	85.122	ENSPPAG00000026651	PNLDC1	100	85.122	Pan_paniscus
MGP_SPRETEiJ_G0021975	Pnldc1	100	87.382	ENSPPRG00000012854	PNLDC1	100	87.382	Panthera_pardus
MGP_SPRETEiJ_G0021975	Pnldc1	99	82.197	ENSPTIG00000011501	PNLDC1	99	82.197	Panthera_tigris_altaica
MGP_SPRETEiJ_G0021975	Pnldc1	100	85.122	ENSPTRG00000018762	PNLDC1	100	85.122	Pan_troglodytes
MGP_SPRETEiJ_G0021975	Pnldc1	100	85.876	ENSPANG00000022009	PNLDC1	100	85.876	Papio_anubis
MGP_SPRETEiJ_G0021975	Pnldc1	100	94.727	ENSPEMG00000016301	Pnldc1	99	94.727	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0021975	Pnldc1	86	30.584	ENSPMAG00000003956	parn	90	30.924	Petromyzon_marinus
MGP_SPRETEiJ_G0021975	Pnldc1	83	77.449	ENSPCIG00000023412	PNLDC1	100	77.449	Phascolarctos_cinereus
MGP_SPRETEiJ_G0021975	Pnldc1	100	80.451	ENSPPYG00000017148	PNLDC1	100	80.451	Pongo_abelii
MGP_SPRETEiJ_G0021975	Pnldc1	99	78.072	ENSPCAG00000014169	PNLDC1	99	78.072	Procavia_capensis
MGP_SPRETEiJ_G0021975	Pnldc1	100	85.876	ENSPCOG00000025722	PNLDC1	100	85.876	Propithecus_coquereli
MGP_SPRETEiJ_G0021975	Pnldc1	73	90.390	ENSPVAG00000005325	PNLDC1	73	90.390	Pteropus_vampyrus
MGP_SPRETEiJ_G0021975	Pnldc1	100	96.798	ENSRNOG00000023140	Pnldc1	100	96.798	Rattus_norvegicus
MGP_SPRETEiJ_G0021975	Pnldc1	100	85.876	ENSRBIG00000033806	PNLDC1	100	85.876	Rhinopithecus_bieti
MGP_SPRETEiJ_G0021975	Pnldc1	95	85.771	ENSRROG00000043919	PNLDC1	97	85.771	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0021975	Pnldc1	100	85.687	ENSSBOG00000019135	PNLDC1	100	85.687	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0021975	Pnldc1	95	76.529	ENSSHAG00000015192	PNLDC1	97	76.529	Sarcophilus_harrisii
MGP_SPRETEiJ_G0021975	Pnldc1	54	65.734	ENSSPUG00000004627	PNLDC1	99	64.732	Sphenodon_punctatus
MGP_SPRETEiJ_G0021975	Pnldc1	96	83.922	ENSSSCG00000004046	PNLDC1	99	83.922	Sus_scrofa
MGP_SPRETEiJ_G0021975	Pnldc1	91	58.763	ENSTGUG00000011418	PNLDC1	99	58.763	Taeniopygia_guttata
MGP_SPRETEiJ_G0021975	Pnldc1	96	74.314	ENSTBEG00000009131	PNLDC1	98	74.314	Tupaia_belangeri
MGP_SPRETEiJ_G0021975	Pnldc1	73	82.902	ENSTTRG00000010409	PNLDC1	73	82.902	Tursiops_truncatus
MGP_SPRETEiJ_G0021975	Pnldc1	99	73.284	ENSUAMG00000015783	PNLDC1	99	73.284	Ursus_americanus
MGP_SPRETEiJ_G0021975	Pnldc1	95	78.585	ENSUMAG00000011903	PNLDC1	99	78.585	Ursus_maritimus
MGP_SPRETEiJ_G0021975	Pnldc1	96	88.454	ENSVVUG00000006586	PNLDC1	99	86.858	Vulpes_vulpes