EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0022155 (Gene tree)
Gene ID: -
Gene Symbol: Rpusd1
Alias: 2310051D06Rik
Full Name: RNA pseudouridylate synthase domain containing 1
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Plus strand
Length: 5770 bases
Position: chr17:22590848-22596617
Accession: 1919186
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0045213	PseudoU_synth_2	PF00849.22	8.1e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0045213	-	1703	-	MGP_SPRETEiJ_P0045213	306 (aa)	-	UPI0000028A73

Gene Model

Click here to download MGP_SPRETEiJ_G0022155's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0022155's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0022155	Rpusd1	100	81.410	ENSG00000007376	RPUSD1	100	87.500	Homo_sapiens
MGP_SPRETEiJ_G0022155	Rpusd1	98	57.616	ENSAPOG00000022221	rpusd1	98	57.616	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0022155	Rpusd1	100	85.294	ENSAMEG00000007461	RPUSD1	100	85.294	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0022155	Rpusd1	98	58.170	ENSACIG00000015863	rpusd1	98	58.170	Amphilophus_citrinellus
MGP_SPRETEiJ_G0022155	Rpusd1	98	57.377	ENSAOCG00000021975	rpusd1	95	57.377	Amphiprion_ocellaris
MGP_SPRETEiJ_G0022155	Rpusd1	98	57.705	ENSAPEG00000001316	rpusd1	95	57.705	Amphiprion_percula
MGP_SPRETEiJ_G0022155	Rpusd1	83	64.822	ENSATEG00000002984	rpusd1	98	58.361	Anabas_testudineus
MGP_SPRETEiJ_G0022155	Rpusd1	78	59.756	ENSAPLG00000012316	RPUSD1	99	59.350	Anas_platyrhynchos
MGP_SPRETEiJ_G0022155	Rpusd1	99	68.977	ENSACAG00000008953	RPUSD1	100	68.977	Anolis_carolinensis
MGP_SPRETEiJ_G0022155	Rpusd1	100	82.692	ENSANAG00000024709	RPUSD1	100	83.333	Aotus_nancymaae
MGP_SPRETEiJ_G0022155	Rpusd1	98	58.632	ENSACLG00000013692	rpusd1	98	57.655	Astatotilapia_calliptera
MGP_SPRETEiJ_G0022155	Rpusd1	99	59.736	ENSAMXG00000019802	rpusd1	100	59.736	Astyanax_mexicanus
MGP_SPRETEiJ_G0022155	Rpusd1	100	85.065	ENSBTAG00000000179	RPUSD1	100	86.039	Bos_taurus
MGP_SPRETEiJ_G0022155	Rpusd1	100	82.692	ENSCJAG00000012253	RPUSD1	100	83.013	Callithrix_jacchus
MGP_SPRETEiJ_G0022155	Rpusd1	100	85.294	ENSCAFG00000019614	RPUSD1	100	85.621	Canis_familiaris
MGP_SPRETEiJ_G0022155	Rpusd1	100	85.294	ENSCAFG00020008891	RPUSD1	100	85.621	Canis_lupus_dingo
MGP_SPRETEiJ_G0022155	Rpusd1	100	85.065	ENSCHIG00000012872	RPUSD1	100	86.039	Capra_hircus
MGP_SPRETEiJ_G0022155	Rpusd1	100	83.660	ENSTSYG00000036934	RPUSD1	100	82.848	Carlito_syrichta
MGP_SPRETEiJ_G0022155	Rpusd1	100	89.216	ENSCAPG00000014219	RPUSD1	100	89.216	Cavia_aperea
MGP_SPRETEiJ_G0022155	Rpusd1	100	89.216	ENSCPOG00000034604	RPUSD1	100	89.216	Cavia_porcellus
MGP_SPRETEiJ_G0022155	Rpusd1	100	83.013	ENSCCAG00000034385	RPUSD1	100	83.333	Cebus_capucinus
MGP_SPRETEiJ_G0022155	Rpusd1	100	83.013	ENSCATG00000042983	RPUSD1	100	83.333	Cercocebus_atys
MGP_SPRETEiJ_G0022155	Rpusd1	100	87.255	ENSCLAG00000013966	RPUSD1	100	87.255	Chinchilla_lanigera
MGP_SPRETEiJ_G0022155	Rpusd1	100	83.013	ENSCSAG00000012121	RPUSD1	100	83.333	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0022155	Rpusd1	99	66.118	ENSCPBG00000021101	RPUSD1	99	66.118	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0022155	Rpusd1	92	85.409	ENSCANG00000028576	RPUSD1	97	86.447	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0022155	Rpusd1	100	92.810	ENSCGRG00001014253	Rpusd1	100	92.810	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0022155	Rpusd1	100	92.810	ENSCGRG00000017995	Rpusd1	100	92.810	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0022155	Rpusd1	99	56.536	ENSCSEG00000018512	rpusd1	100	56.209	Cynoglossus_semilaevis
MGP_SPRETEiJ_G0022155	Rpusd1	98	58.333	ENSCVAG00000022746	rpusd1	98	58.333	Cyprinodon_variegatus
MGP_SPRETEiJ_G0022155	Rpusd1	99	62.706	ENSDARG00000060192	rpusd1	100	62.092	Danio_rerio
MGP_SPRETEiJ_G0022155	Rpusd1	100	81.090	ENSDNOG00000003721	RPUSD1	100	80.317	Dasypus_novemcinctus
MGP_SPRETEiJ_G0022155	Rpusd1	100	88.889	ENSDORG00000026656	Rpusd1	100	88.562	Dipodomys_ordii
MGP_SPRETEiJ_G0022155	Rpusd1	99	44.785	ENSEBUG00000008767	rpusd1	94	45.597	Eptatretus_burgeri
MGP_SPRETEiJ_G0022155	Rpusd1	100	82.911	ENSEASG00005018421	RPUSD1	76	83.228	Equus_asinus_asinus
MGP_SPRETEiJ_G0022155	Rpusd1	83	60.236	ENSELUG00000014307	rpusd1	88	52.366	Esox_lucius
MGP_SPRETEiJ_G0022155	Rpusd1	100	83.333	ENSFCAG00000010359	RPUSD1	100	83.007	Felis_catus
MGP_SPRETEiJ_G0022155	Rpusd1	99	67.987	ENSFALG00000003211	RPUSD1	100	67.327	Ficedula_albicollis
MGP_SPRETEiJ_G0022155	Rpusd1	100	88.235	ENSFDAG00000013398	RPUSD1	100	88.235	Fukomys_damarensis
MGP_SPRETEiJ_G0022155	Rpusd1	98	57.426	ENSFHEG00000004736	rpusd1	98	57.426	Fundulus_heteroclitus
MGP_SPRETEiJ_G0022155	Rpusd1	83	62.846	ENSGMOG00000010756	rpusd1	98	55.263	Gadus_morhua
MGP_SPRETEiJ_G0022155	Rpusd1	99	66.230	ENSGALG00000005315	RPUSD1	100	65.902	Gallus_gallus
MGP_SPRETEiJ_G0022155	Rpusd1	98	59.000	ENSGAFG00000009886	rpusd1	98	59.000	Gambusia_affinis
MGP_SPRETEiJ_G0022155	Rpusd1	82	64.143	ENSGACG00000014276	rpusd1	97	57.756	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0022155	Rpusd1	99	66.118	ENSGAGG00000004181	RPUSD1	99	66.118	Gopherus_agassizii
MGP_SPRETEiJ_G0022155	Rpusd1	100	81.090	ENSGGOG00000013997	RPUSD1	100	81.410	Gorilla_gorilla
MGP_SPRETEiJ_G0022155	Rpusd1	98	58.306	ENSHBUG00000023728	rpusd1	98	57.329	Haplochromis_burtoni
MGP_SPRETEiJ_G0022155	Rpusd1	100	87.908	ENSHGLG00000002595	RPUSD1	100	87.908	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0022155	Rpusd1	100	87.908	ENSHGLG00100014303	RPUSD1	100	87.908	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0022155	Rpusd1	98	57.895	ENSHCOG00000002390	rpusd1	99	57.426	Hippocampus_comes
MGP_SPRETEiJ_G0022155	Rpusd1	99	61.842	ENSIPUG00000001570	rpusd1	99	61.842	Ictalurus_punctatus
MGP_SPRETEiJ_G0022155	Rpusd1	100	89.542	ENSSTOG00000004276	RPUSD1	100	89.542	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0022155	Rpusd1	100	91.830	ENSJJAG00000015696	Rpusd1	100	91.830	Jaculus_jaculus
MGP_SPRETEiJ_G0022155	Rpusd1	98	57.426	ENSKMAG00000017287	rpusd1	98	57.333	Kryptolebias_marmoratus
MGP_SPRETEiJ_G0022155	Rpusd1	98	57.377	ENSLBEG00000013354	RPUSD1	98	57.705	Labrus_bergylta
MGP_SPRETEiJ_G0022155	Rpusd1	98	57.377	ENSLBEG00000022502	rpusd1	98	57.705	Labrus_bergylta
MGP_SPRETEiJ_G0022155	Rpusd1	99	62.583	ENSLACG00000008869	RPUSD1	99	62.583	Latimeria_chalumnae
MGP_SPRETEiJ_G0022155	Rpusd1	71	74.074	ENSLOCG00000005682	rpusd1	99	74.074	Lepisosteus_oculatus
MGP_SPRETEiJ_G0022155	Rpusd1	100	83.660	ENSLAFG00000002115	RPUSD1	100	83.660	Loxodonta_africana
MGP_SPRETEiJ_G0022155	Rpusd1	100	83.333	ENSMFAG00000003961	RPUSD1	100	83.654	Macaca_fascicularis
MGP_SPRETEiJ_G0022155	Rpusd1	100	83.333	ENSMMUG00000000842	RPUSD1	100	83.654	Macaca_mulatta
MGP_SPRETEiJ_G0022155	Rpusd1	100	83.333	ENSMNEG00000042712	RPUSD1	100	83.654	Macaca_nemestrina
MGP_SPRETEiJ_G0022155	Rpusd1	100	83.333	ENSMLEG00000030591	RPUSD1	100	83.654	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0022155	Rpusd1	83	64.822	ENSMAMG00000004735	rpusd1	98	58.170	Mastacembelus_armatus
MGP_SPRETEiJ_G0022155	Rpusd1	98	58.632	ENSMZEG00005003214	rpusd1	98	57.655	Maylandia_zebra
MGP_SPRETEiJ_G0022155	Rpusd1	97	65.667	ENSMGAG00000005447	RPUSD1	99	65.667	Meleagris_gallopavo
MGP_SPRETEiJ_G0022155	Rpusd1	86	86.466	ENSMAUG00000019998	Rpusd1	100	86.466	Mesocricetus_auratus
MGP_SPRETEiJ_G0022155	Rpusd1	100	85.342	ENSMICG00000017561	RPUSD1	100	84.076	Microcebus_murinus
MGP_SPRETEiJ_G0022155	Rpusd1	100	95.752	ENSMOCG00000014082	Rpusd1	100	95.752	Microtus_ochrogaster
MGP_SPRETEiJ_G0022155	Rpusd1	78	67.083	ENSMMOG00000012569	rpusd1	99	58.000	Mola_mola
MGP_SPRETEiJ_G0022155	Rpusd1	100	72.258	ENSMODG00000016882	RPUSD1	100	71.613	Monodelphis_domestica
MGP_SPRETEiJ_G0022155	Rpusd1	98	57.516	ENSMALG00000017818	rpusd1	98	58.170	Monopterus_albus
MGP_SPRETEiJ_G0022155	Rpusd1	100	99.020	MGP_CAROLIEiJ_G0021244	Rpusd1	100	99.020	Mus_caroli
MGP_SPRETEiJ_G0022155	Rpusd1	100	100.000	ENSMUSG00000041199	Rpusd1	100	100.000	Mus_musculus
MGP_SPRETEiJ_G0022155	Rpusd1	100	97.403	MGP_PahariEiJ_G0023562	Rpusd1	100	97.403	Mus_pahari
MGP_SPRETEiJ_G0022155	Rpusd1	100	83.007	ENSMPUG00000015897	RPUSD1	100	84.314	Mustela_putorius_furo
MGP_SPRETEiJ_G0022155	Rpusd1	100	85.256	ENSMLUG00000001089	RPUSD1	100	85.897	Myotis_lucifugus
MGP_SPRETEiJ_G0022155	Rpusd1	100	93.137	ENSNGAG00000003595	Rpusd1	100	93.137	Nannospalax_galili
MGP_SPRETEiJ_G0022155	Rpusd1	98	58.528	ENSNBRG00000006457	rpusd1	98	58.528	Neolamprologus_brichardi
MGP_SPRETEiJ_G0022155	Rpusd1	55	77.714	ENSNLEG00000008424	-	100	77.714	Nomascus_leucogenys
MGP_SPRETEiJ_G0022155	Rpusd1	100	70.740	ENSMEUG00000016049	RPUSD1	100	71.242	Notamacropus_eugenii
MGP_SPRETEiJ_G0022155	Rpusd1	99	77.961	ENSOPRG00000008340	RPUSD1	99	77.961	Ochotona_princeps
MGP_SPRETEiJ_G0022155	Rpusd1	100	84.967	ENSODEG00000016945	RPUSD1	100	84.967	Octodon_degus
MGP_SPRETEiJ_G0022155	Rpusd1	98	57.980	ENSONIG00000015672	rpusd1	99	57.003	Oreochromis_niloticus
MGP_SPRETEiJ_G0022155	Rpusd1	99	58.278	ENSORLG00000013009	rpusd1	99	58.278	Oryzias_latipes
MGP_SPRETEiJ_G0022155	Rpusd1	99	57.947	ENSORLG00020010382	rpusd1	99	57.947	Oryzias_latipes_hni
MGP_SPRETEiJ_G0022155	Rpusd1	99	57.285	ENSORLG00015021354	rpusd1	99	57.285	Oryzias_latipes_hsok
MGP_SPRETEiJ_G0022155	Rpusd1	98	57.860	ENSOMEG00000021426	rpusd1	98	57.860	Oryzias_melastigma
MGP_SPRETEiJ_G0022155	Rpusd1	100	87.821	ENSOGAG00000003795	RPUSD1	100	87.179	Otolemur_garnettii
MGP_SPRETEiJ_G0022155	Rpusd1	100	84.740	ENSOARG00000014254	RPUSD1	100	85.714	Ovis_aries
MGP_SPRETEiJ_G0022155	Rpusd1	100	81.090	ENSPPAG00000034797	RPUSD1	100	81.410	Pan_paniscus
MGP_SPRETEiJ_G0022155	Rpusd1	100	83.007	ENSPPRG00000012389	RPUSD1	100	82.201	Panthera_pardus
MGP_SPRETEiJ_G0022155	Rpusd1	100	83.007	ENSPTIG00000008545	RPUSD1	92	82.201	Panthera_tigris_altaica
MGP_SPRETEiJ_G0022155	Rpusd1	100	81.090	ENSPTRG00000007565	RPUSD1	100	81.410	Pan_troglodytes
MGP_SPRETEiJ_G0022155	Rpusd1	100	82.692	ENSPANG00000024401	RPUSD1	100	83.013	Papio_anubis
MGP_SPRETEiJ_G0022155	Rpusd1	99	59.871	ENSPKIG00000018890	rpusd1	91	59.871	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0022155	Rpusd1	99	67.869	ENSPSIG00000013945	RPUSD1	100	67.541	Pelodiscus_sinensis
MGP_SPRETEiJ_G0022155	Rpusd1	98	58.528	ENSPMGG00000014950	rpusd1	98	58.528	Periophthalmus_magnuspinnatus
MGP_SPRETEiJ_G0022155	Rpusd1	100	96.078	ENSPEMG00000000497	Rpusd1	100	96.078	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0022155	Rpusd1	98	50.654	ENSPMAG00000001563	rpusd1	82	57.143	Petromyzon_marinus
MGP_SPRETEiJ_G0022155	Rpusd1	100	70.927	ENSPCIG00000021216	-	94	72.222	Phascolarctos_cinereus
MGP_SPRETEiJ_G0022155	Rpusd1	98	58.746	ENSPFOG00000007946	rpusd1	98	58.194	Poecilia_formosa
MGP_SPRETEiJ_G0022155	Rpusd1	98	58.746	ENSPLAG00000011925	rpusd1	98	58.194	Poecilia_latipinna
MGP_SPRETEiJ_G0022155	Rpusd1	98	58.416	ENSPMEG00000002910	rpusd1	98	57.860	Poecilia_mexicana
MGP_SPRETEiJ_G0022155	Rpusd1	98	59.667	ENSPREG00000019851	rpusd1	98	59.667	Poecilia_reticulata
MGP_SPRETEiJ_G0022155	Rpusd1	100	67.647	ENSPCAG00000002258	RPUSD1	100	67.647	Procavia_capensis
MGP_SPRETEiJ_G0022155	Rpusd1	100	86.218	ENSPCOG00000022582	RPUSD1	100	86.538	Propithecus_coquereli
MGP_SPRETEiJ_G0022155	Rpusd1	100	83.013	ENSPVAG00000013104	RPUSD1	100	83.333	Pteropus_vampyrus
MGP_SPRETEiJ_G0022155	Rpusd1	98	58.306	ENSPNYG00000024076	rpusd1	98	57.860	Pundamilia_nyererei
MGP_SPRETEiJ_G0022155	Rpusd1	99	58.416	ENSPNAG00000013806	rpusd1	100	58.746	Pygocentrus_nattereri
MGP_SPRETEiJ_G0022155	Rpusd1	100	97.386	ENSRNOG00000023639	Rpusd1	100	97.386	Rattus_norvegicus
MGP_SPRETEiJ_G0022155	Rpusd1	100	83.013	ENSRBIG00000030238	RPUSD1	100	83.333	Rhinopithecus_bieti
MGP_SPRETEiJ_G0022155	Rpusd1	100	83.013	ENSRROG00000036663	RPUSD1	100	83.333	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0022155	Rpusd1	100	83.007	ENSSBOG00000033063	RPUSD1	100	83.660	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0022155	Rpusd1	100	69.968	ENSSHAG00000013500	RPUSD1	100	71.242	Sarcophilus_harrisii
MGP_SPRETEiJ_G0022155	Rpusd1	99	62.252	ENSSFOG00015014394	rpusd1	99	62.252	Scleropages_formosus
MGP_SPRETEiJ_G0022155	Rpusd1	98	58.033	ENSSMAG00000008045	rpusd1	91	57.705	Scophthalmus_maximus
MGP_SPRETEiJ_G0022155	Rpusd1	83	66.403	ENSSDUG00000001829	rpusd1	95	59.672	Seriola_dumerili
MGP_SPRETEiJ_G0022155	Rpusd1	83	66.403	ENSSLDG00000020853	rpusd1	95	59.672	Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0022155	Rpusd1	55	88.024	ENSSARG00000011187	-	100	88.024	Sorex_araneus
MGP_SPRETEiJ_G0022155	Rpusd1	63	55.155	ENSSPUG00000005119	-	100	55.155	Sphenodon_punctatus
MGP_SPRETEiJ_G0022155	Rpusd1	98	58.689	ENSSPAG00000012708	rpusd1	98	58.689	Stegastes_partitus
MGP_SPRETEiJ_G0022155	Rpusd1	100	83.974	ENSSSCG00000008000	RPUSD1	98	87.795	Sus_scrofa
MGP_SPRETEiJ_G0022155	Rpusd1	83	75.686	ENSTGUG00000015375	RPUSD1	100	75.686	Taeniopygia_guttata
MGP_SPRETEiJ_G0022155	Rpusd1	98	57.190	ENSTRUG00000003041	rpusd1	98	57.190	Takifugu_rubripes
MGP_SPRETEiJ_G0022155	Rpusd1	98	54.333	ENSTNIG00000002660	rpusd1	99	54.333	Tetraodon_nigroviridis
MGP_SPRETEiJ_G0022155	Rpusd1	100	85.256	ENSTTRG00000010167	RPUSD1	100	84.295	Tursiops_truncatus
MGP_SPRETEiJ_G0022155	Rpusd1	100	85.294	ENSUAMG00000012736	RPUSD1	100	85.621	Ursus_americanus
MGP_SPRETEiJ_G0022155	Rpusd1	100	85.294	ENSUMAG00000021174	RPUSD1	100	85.621	Ursus_maritimus
MGP_SPRETEiJ_G0022155	Rpusd1	100	84.365	ENSVVUG00000012357	RPUSD1	100	84.314	Vulpes_vulpes
MGP_SPRETEiJ_G0022155	Rpusd1	100	61.111	ENSXETG00000007184	rpusd1	100	60.191	Xenopus_tropicalis
MGP_SPRETEiJ_G0022155	Rpusd1	98	58.333	ENSXCOG00000017930	rpusd1	98	58.333	Xiphophorus_couchianus
MGP_SPRETEiJ_G0022155	Rpusd1	98	58.667	ENSXMAG00000024084	rpusd1	98	58.667	Xiphophorus_maculatus