EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0022396 (Gene tree)
Gene ID: -
Gene Symbol: Vars
Alias: Bat-6|Bat6|D17H6S56E|G7a|Vars2
Full Name: valyl-tRNA synthetase
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Plus strand
Length: 15283 bases
Position: chr17:32678566-32693848
Accession: 90675
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0046273	tRNA-synt_1g	PF09334.11	8e-11	1	1
MGP_SPRETEiJ_P0046274	tRNA-synt_1g	PF09334.11	8.6e-11	1	1
MGP_SPRETEiJ_P0046273	Anticodon_1	PF08264.13	3.9e-32	1	1
MGP_SPRETEiJ_P0046274	Anticodon_1	PF08264.13	4.1e-32	1	1
MGP_SPRETEiJ_P0046273	tRNA-synt_1	PF00133.22	1.5e-201	1	1
MGP_SPRETEiJ_P0046274	tRNA-synt_1	PF00133.22	1.6e-201	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0046281	-	557	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0046280	-	746	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0046283	-	388	-	MGP_SPRETEiJ_P0046283	129 (aa)	-	-
MGP_SPRETEiJ_T0046282	-	803	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0046278	-	475	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0046279	-	347	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0046274	-	4061	-	MGP_SPRETEiJ_P0046274	1282 (aa)	-	UPI000333536C
MGP_SPRETEiJ_T0046275	-	819	-	MGP_SPRETEiJ_P0046275	230 (aa)	-	UPI0003F48691
MGP_SPRETEiJ_T0046276	-	423	-	MGP_SPRETEiJ_P0046276	125 (aa)	-	UPI00021CF897
MGP_SPRETEiJ_T0046277	-	3731	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0046273	-	4138	-	MGP_SPRETEiJ_P0046273	1263 (aa)	-	UPI0003335385
MGP_SPRETEiJ_T0046285	-	838	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0046284	-	744	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0022396's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0022396's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_SPRETEiJ_G0022396	Vars	82	50.288	MGP_SPRETEiJ_G0022436	Vars2	93	52.661

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0022396	Vars	100	92.642	ENSG00000204394	VARS	100	93.117	Homo_sapiens
MGP_SPRETEiJ_G0022396	Vars	98	64.446	ENSAPOG00000020691	vars	99	64.125	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0022396	Vars	98	64.446	ENSAPOG00000020921	vars	99	64.125	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0022396	Vars	100	93.123	ENSAMEG00000006417	VARS	100	93.281	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0022396	Vars	100	65.412	ENSACIG00000013752	vars	100	65.303	Amphilophus_citrinellus
MGP_SPRETEiJ_G0022396	Vars	100	65.004	ENSAOCG00000002447	vars	100	64.094	Amphiprion_ocellaris
MGP_SPRETEiJ_G0022396	Vars	100	64.926	ENSAPEG00000010638	vars	99	64.926	Amphiprion_percula
MGP_SPRETEiJ_G0022396	Vars	100	64.961	ENSATEG00000020219	vars	100	64.460	Anabas_testudineus
MGP_SPRETEiJ_G0022396	Vars	90	71.231	ENSACAG00000029133	-	99	71.231	Anolis_carolinensis
MGP_SPRETEiJ_G0022396	Vars	100	92.484	ENSANAG00000015453	VARS	100	92.959	Aotus_nancymaae
MGP_SPRETEiJ_G0022396	Vars	100	64.884	ENSACLG00000025699	vars	97	64.774	Astatotilapia_calliptera
MGP_SPRETEiJ_G0022396	Vars	94	66.694	ENSAMXG00000017716	vars	95	66.694	Astyanax_mexicanus
MGP_SPRETEiJ_G0022396	Vars	100	92.484	ENSBTAG00000005631	VARS	100	92.959	Bos_taurus
MGP_SPRETEiJ_G0022396	Vars	100	92.247	ENSCJAG00000002604	VARS	100	92.722	Callithrix_jacchus
MGP_SPRETEiJ_G0022396	Vars	100	92.484	ENSCAFG00000000636	VARS	100	92.642	Canis_familiaris
MGP_SPRETEiJ_G0022396	Vars	94	92.652	ENSCAFG00020020790	VARS	96	92.821	Canis_lupus_dingo
MGP_SPRETEiJ_G0022396	Vars	100	92.642	ENSCHIG00000011008	VARS	100	93.117	Capra_hircus
MGP_SPRETEiJ_G0022396	Vars	100	92.959	ENSTSYG00000001567	VARS	100	93.434	Carlito_syrichta
MGP_SPRETEiJ_G0022396	Vars	91	91.003	ENSCAPG00000013736	VARS	99	90.657	Cavia_aperea
MGP_SPRETEiJ_G0022396	Vars	100	91.930	ENSCPOG00000000870	VARS	100	91.614	Cavia_porcellus
MGP_SPRETEiJ_G0022396	Vars	100	93.275	ENSCCAG00000035656	VARS	100	94.776	Cebus_capucinus
MGP_SPRETEiJ_G0022396	Vars	100	93.592	ENSCATG00000022394	VARS	100	93.196	Cercocebus_atys
MGP_SPRETEiJ_G0022396	Vars	93	86.942	ENSCLAG00000009470	VARS	98	85.599	Chinchilla_lanigera
MGP_SPRETEiJ_G0022396	Vars	100	93.829	ENSCSAG00000008784	VARS	100	93.434	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0022396	Vars	77	74.435	ENSCPBG00000007943	VARS	96	74.538	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0022396	Vars	100	93.829	ENSCANG00000033570	VARS	100	93.434	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0022396	Vars	100	95.016	ENSCGRG00001005686	Vars	100	95.411	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0022396	Vars	92	89.531	ENSCGRG00000013352	Vars	78	89.950	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0022396	Vars	100	64.557	ENSCSEG00000019652	vars	100	64.478	Cynoglossus_semilaevis
MGP_SPRETEiJ_G0022396	Vars	100	65.708	ENSCVAG00000022398	vars	100	65.708	Cyprinodon_variegatus
MGP_SPRETEiJ_G0022396	Vars	100	65.136	ENSDARG00000044575	vars	100	65.292	Danio_rerio
MGP_SPRETEiJ_G0022396	Vars	84	92.568	ENSDORG00000016433	Vars	95	92.192	Dipodomys_ordii
MGP_SPRETEiJ_G0022396	Vars	68	86.076	ENSETEG00000003824	VARS	76	86.076	Echinops_telfairi
MGP_SPRETEiJ_G0022396	Vars	57	62.500	ENSEBUG00000004637	vars	100	62.775	Eptatretus_burgeri
MGP_SPRETEiJ_G0022396	Vars	50	71.506	ENSEBUG00000007086	vars	84	70.332	Eptatretus_burgeri
MGP_SPRETEiJ_G0022396	Vars	100	93.354	ENSEASG00005015673	VARS	100	93.829	Equus_asinus_asinus
MGP_SPRETEiJ_G0022396	Vars	100	93.202	ENSECAG00000014620	VARS	100	93.913	Equus_caballus
MGP_SPRETEiJ_G0022396	Vars	78	91.696	ENSEEUG00000004116	VARS	80	91.696	Erinaceus_europaeus
MGP_SPRETEiJ_G0022396	Vars	100	64.302	ENSELUG00000006550	vars	97	64.456	Esox_lucius
MGP_SPRETEiJ_G0022396	Vars	100	92.801	ENSFCAG00000004510	VARS	100	93.117	Felis_catus
MGP_SPRETEiJ_G0022396	Vars	82	92.165	ENSFDAG00000011401	VARS	100	92.165	Fukomys_damarensis
MGP_SPRETEiJ_G0022396	Vars	100	65.785	ENSFHEG00000010672	vars	100	65.863	Fundulus_heteroclitus
MGP_SPRETEiJ_G0022396	Vars	92	66.639	ENSGMOG00000014908	vars	97	66.806	Gadus_morhua
MGP_SPRETEiJ_G0022396	Vars	100	65.966	ENSGAFG00000021630	vars	100	65.966	Gambusia_affinis
MGP_SPRETEiJ_G0022396	Vars	92	66.583	ENSGACG00000009601	vars	98	66.222	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0022396	Vars	50	64.715	ENSGAGG00000006508	-	91	64.557	Gopherus_agassizii
MGP_SPRETEiJ_G0022396	Vars	100	93.671	ENSGGOG00000011364	VARS	100	93.275	Gorilla_gorilla
MGP_SPRETEiJ_G0022396	Vars	100	64.884	ENSHBUG00000017151	vars	97	64.774	Haplochromis_burtoni
MGP_SPRETEiJ_G0022396	Vars	100	91.845	ENSHGLG00000011646	VARS	100	91.845	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0022396	Vars	93	83.707	ENSHGLG00100018062	VARS	100	83.541	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0022396	Vars	99	64.953	ENSHCOG00000012198	vars	99	65.055	Hippocampus_comes
MGP_SPRETEiJ_G0022396	Vars	100	65.447	ENSIPUG00000005218	vars	100	65.603	Ictalurus_punctatus
MGP_SPRETEiJ_G0022396	Vars	100	94.071	ENSSTOG00000013112	VARS	100	93.755	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0022396	Vars	100	73.001	ENSJJAG00000015343	-	100	73.397	Jaculus_jaculus
MGP_SPRETEiJ_G0022396	Vars	100	92.241	ENSJJAG00000019749	-	100	92.241	Jaculus_jaculus
MGP_SPRETEiJ_G0022396	Vars	100	65.929	ENSKMAG00000009455	vars	100	65.929	Kryptolebias_marmoratus
MGP_SPRETEiJ_G0022396	Vars	100	64.692	ENSLBEG00000010341	vars	100	64.534	Labrus_bergylta
MGP_SPRETEiJ_G0022396	Vars	94	62.366	ENSLACG00000015232	VARS	99	63.024	Latimeria_chalumnae
MGP_SPRETEiJ_G0022396	Vars	100	66.875	ENSLOCG00000004240	vars	100	66.954	Lepisosteus_oculatus
MGP_SPRETEiJ_G0022396	Vars	100	92.716	ENSLAFG00000023090	VARS	100	92.716	Loxodonta_africana
MGP_SPRETEiJ_G0022396	Vars	100	93.829	ENSMFAG00000001032	VARS	100	93.434	Macaca_fascicularis
MGP_SPRETEiJ_G0022396	Vars	100	93.829	ENSMMUG00000006828	VARS	100	93.434	Macaca_mulatta
MGP_SPRETEiJ_G0022396	Vars	100	93.987	ENSMNEG00000042072	VARS	100	93.592	Macaca_nemestrina
MGP_SPRETEiJ_G0022396	Vars	100	93.750	ENSMLEG00000039307	VARS	100	93.354	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0022396	Vars	100	65.262	ENSMAMG00000003949	vars	100	65.105	Mastacembelus_armatus
MGP_SPRETEiJ_G0022396	Vars	100	64.884	ENSMZEG00005018327	vars	100	64.376	Maylandia_zebra
MGP_SPRETEiJ_G0022396	Vars	100	94.383	ENSMAUG00000006715	Vars	100	94.858	Mesocricetus_auratus
MGP_SPRETEiJ_G0022396	Vars	100	92.563	ENSMICG00000003548	VARS	100	94.279	Microcebus_murinus
MGP_SPRETEiJ_G0022396	Vars	100	93.349	ENSMOCG00000015404	Vars	100	93.349	Microtus_ochrogaster
MGP_SPRETEiJ_G0022396	Vars	100	64.280	ENSMMOG00000015801	vars	100	64.123	Mola_mola
MGP_SPRETEiJ_G0022396	Vars	100	86.234	ENSMODG00000015204	-	100	85.759	Monodelphis_domestica
MGP_SPRETEiJ_G0022396	Vars	99	64.911	ENSMALG00000022532	vars	99	64.802	Monopterus_albus
MGP_SPRETEiJ_G0022396	Vars	100	99.525	MGP_CAROLIEiJ_G0021491	Vars	100	99.525	Mus_caroli
MGP_SPRETEiJ_G0022396	Vars	100	99.921	ENSMUSG00000007029	Vars	100	99.921	Mus_musculus
MGP_SPRETEiJ_G0022396	Vars	100	98.892	MGP_PahariEiJ_G0020486	Vars	100	98.892	Mus_pahari
MGP_SPRETEiJ_G0022396	Vars	100	92.880	ENSMPUG00000010821	VARS	100	93.038	Mustela_putorius_furo
MGP_SPRETEiJ_G0022396	Vars	78	92.915	ENSMLUG00000013126	VARS	100	92.915	Myotis_lucifugus
MGP_SPRETEiJ_G0022396	Vars	100	93.903	ENSNGAG00000012151	Vars	100	93.903	Nannospalax_galili
MGP_SPRETEiJ_G0022396	Vars	100	64.651	ENSNBRG00000020520	vars	100	64.541	Neolamprologus_brichardi
MGP_SPRETEiJ_G0022396	Vars	100	92.326	ENSNLEG00000006351	VARS	100	92.801	Nomascus_leucogenys
MGP_SPRETEiJ_G0022396	Vars	100	82.753	ENSMEUG00000011378	VARS	100	83.149	Notamacropus_eugenii
MGP_SPRETEiJ_G0022396	Vars	100	92.959	ENSOPRG00000003607	VARS	100	93.434	Ochotona_princeps
MGP_SPRETEiJ_G0022396	Vars	100	91.845	ENSODEG00000017681	VARS	100	91.845	Octodon_degus
MGP_SPRETEiJ_G0022396	Vars	100	65.442	ENSONIG00000013064	vars	99	68.146	Oreochromis_niloticus
MGP_SPRETEiJ_G0022396	Vars	77	78.954	ENSOANG00000005400	VARS	98	78.478	Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0022396	Vars	100	90.830	ENSOCUG00000022463	VARS	100	90.909	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0022396	Vars	100	65.483	ENSORLG00000013063	vars	100	65.560	Oryzias_latipes
MGP_SPRETEiJ_G0022396	Vars	100	65.943	ENSORLG00020003504	vars	100	66.020	Oryzias_latipes_hni
MGP_SPRETEiJ_G0022396	Vars	100	65.916	ENSORLG00015009001	vars	100	65.916	Oryzias_latipes_hsok
MGP_SPRETEiJ_G0022396	Vars	100	65.839	ENSOMEG00000015016	vars	100	65.839	Oryzias_melastigma
MGP_SPRETEiJ_G0022396	Vars	100	93.434	ENSOGAG00000007515	VARS	100	93.434	Otolemur_garnettii
MGP_SPRETEiJ_G0022396	Vars	100	92.880	ENSPPAG00000034012	VARS	100	93.354	Pan_paniscus
MGP_SPRETEiJ_G0022396	Vars	100	92.959	ENSPPRG00000014855	VARS	100	93.275	Panthera_pardus
MGP_SPRETEiJ_G0022396	Vars	85	93.030	ENSPTIG00000010462	VARS	95	93.407	Panthera_tigris_altaica
MGP_SPRETEiJ_G0022396	Vars	100	92.959	ENSPTRG00000017985	VARS	100	93.434	Pan_troglodytes
MGP_SPRETEiJ_G0022396	Vars	100	92.192	ENSPANG00000014565	VARS	100	91.798	Papio_anubis
MGP_SPRETEiJ_G0022396	Vars	100	64.065	ENSPKIG00000016304	vars	100	64.065	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0022396	Vars	100	65.904	ENSPMGG00000023909	vars	100	65.825	Periophthalmus_magnuspinnatus
MGP_SPRETEiJ_G0022396	Vars	100	96.598	ENSPEMG00000006639	Vars	100	96.598	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0022396	Vars	100	85.997	ENSPCIG00000018553	VARS	100	85.522	Phascolarctos_cinereus
MGP_SPRETEiJ_G0022396	Vars	100	66.044	ENSPFOG00000015690	vars	100	66.044	Poecilia_formosa
MGP_SPRETEiJ_G0022396	Vars	100	66.220	ENSPLAG00000009590	vars	100	66.220	Poecilia_latipinna
MGP_SPRETEiJ_G0022396	Vars	100	66.044	ENSPMEG00000004708	vars	100	66.044	Poecilia_mexicana
MGP_SPRETEiJ_G0022396	Vars	100	64.145	ENSPREG00000013264	vars	100	63.529	Poecilia_reticulata
MGP_SPRETEiJ_G0022396	Vars	100	91.930	ENSPPYG00000016460	VARS	100	91.930	Pongo_abelii
MGP_SPRETEiJ_G0022396	Vars	86	91.921	ENSPCAG00000013565	VARS	86	91.921	Procavia_capensis
MGP_SPRETEiJ_G0022396	Vars	100	92.885	ENSPCOG00000010942	VARS	100	93.597	Propithecus_coquereli
MGP_SPRETEiJ_G0022396	Vars	100	89.794	ENSPVAG00000012403	VARS	100	89.399	Pteropus_vampyrus
MGP_SPRETEiJ_G0022396	Vars	100	64.884	ENSPNYG00000022511	vars	100	64.774	Pundamilia_nyererei
MGP_SPRETEiJ_G0022396	Vars	100	65.322	ENSPNAG00000020962	vars	100	65.167	Pygocentrus_nattereri
MGP_SPRETEiJ_G0022396	Vars	100	97.943	ENSRNOG00000000867	Vars	100	97.943	Rattus_norvegicus
MGP_SPRETEiJ_G0022396	Vars	100	93.750	ENSRBIG00000041669	VARS	100	93.354	Rhinopithecus_bieti
MGP_SPRETEiJ_G0022396	Vars	100	93.750	ENSRROG00000045490	VARS	100	93.354	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0022396	Vars	100	92.326	ENSSBOG00000035402	VARS	100	92.801	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0022396	Vars	100	81.176	ENSSHAG00000006937	VARS	100	81.020	Sarcophilus_harrisii
MGP_SPRETEiJ_G0022396	Vars	100	65.301	ENSSFOG00015014272	vars	97	72.644	Scleropages_formosus
MGP_SPRETEiJ_G0022396	Vars	100	64.130	ENSSMAG00000009596	vars	99	64.130	Scophthalmus_maximus
MGP_SPRETEiJ_G0022396	Vars	100	64.783	ENSSDUG00000014177	vars	100	64.674	Seriola_dumerili
MGP_SPRETEiJ_G0022396	Vars	100	64.783	ENSSLDG00000025316	vars	100	64.674	Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0022396	Vars	100	64.926	ENSSPAG00000017068	vars	100	65.004	Stegastes_partitus
MGP_SPRETEiJ_G0022396	Vars	100	92.411	ENSSSCG00000038950	VARS	100	93.123	Sus_scrofa
MGP_SPRETEiJ_G0022396	Vars	82	64.683	ENSTRUG00000012307	vars	98	64.627	Takifugu_rubripes
MGP_SPRETEiJ_G0022396	Vars	100	65.176	ENSTNIG00000008011	vars	100	65.176	Tetraodon_nigroviridis
MGP_SPRETEiJ_G0022396	Vars	53	96.629	ENSTBEG00000004728	-	60	96.629	Tupaia_belangeri
MGP_SPRETEiJ_G0022396	Vars	100	85.206	ENSTTRG00000014128	VARS	100	85.127	Tursiops_truncatus
MGP_SPRETEiJ_G0022396	Vars	100	88.994	ENSUAMG00000010424	VARS	100	89.280	Ursus_americanus
MGP_SPRETEiJ_G0022396	Vars	93	91.746	ENSUMAG00000013486	VARS	98	92.063	Ursus_maritimus
MGP_SPRETEiJ_G0022396	Vars	100	92.648	ENSVVUG00000021323	VARS	100	92.806	Vulpes_vulpes
MGP_SPRETEiJ_G0022396	Vars	96	62.834	ENSXETG00000024076	vars	98	62.834	Xenopus_tropicalis
MGP_SPRETEiJ_G0022396	Vars	100	65.879	ENSXCOG00000019172	vars	100	65.879	Xiphophorus_couchianus
MGP_SPRETEiJ_G0022396	Vars	100	65.810	ENSXMAG00000010927	vars	100	65.810	Xiphophorus_maculatus