EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0022690 (Gene tree)
Gene ID: -
Gene Symbol: Safb2
Alias: -
Full Name: scaffold attachment factor B2
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Minus strand
Length: 26997 bases
Position: chr17:54499009-54526005
Accession: 2146808
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0047235	RRM_1	PF00076.22	6.1e-13	1	1
MGP_SPRETEiJ_P0047235	SAP	PF02037.27	2.3e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0047239	-	886	-	MGP_SPRETEiJ_P0047239	295 (aa)	-	UPI0001889C18
MGP_SPRETEiJ_T0047238	-	870	-	MGP_SPRETEiJ_P0047238	249 (aa)	-	-
MGP_SPRETEiJ_T0047233	-	2634	-	MGP_SPRETEiJ_P0047233	82 (aa)	-	-
MGP_SPRETEiJ_T0047232	-	438	-	MGP_SPRETEiJ_P0047232	65 (aa)	-	-
MGP_SPRETEiJ_T0047237	-	552	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0047236	-	2523	-	MGP_SPRETEiJ_P0047236	179 (aa)	-	-
MGP_SPRETEiJ_T0047235	-	2998	-	MGP_SPRETEiJ_P0047235	898 (aa)	-	-
MGP_SPRETEiJ_T0047234	-	1233	-	MGP_SPRETEiJ_P0047234	248 (aa)	-	-
MGP_SPRETEiJ_T0047242	-	2029	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0047243	-	570	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0047240	-	632	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0047241	-	685	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0047246	-	842	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0047247	-	439	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0047244	-	1090	-	MGP_SPRETEiJ_P0047244	214 (aa)	-	-
MGP_SPRETEiJ_T0047245	-	970	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0022690's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0022690's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_SPRETEiJ_G0022690	Safb2	55	39.000	MGP_SPRETEiJ_G0033542	Sltm	51	44.573
MGP_SPRETEiJ_G0022690	Safb2	91	48.500	MGP_SPRETEiJ_G0022691	-	92	56.169

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0022690	Safb2	100	62.157	ENSG00000130254	SAFB2	100	64.121	Homo_sapiens
MGP_SPRETEiJ_G0022690	Safb2	100	63.934	ENSAMEG00000012146	SAFB2	100	61.963	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0022690	Safb2	100	63.243	ENSANAG00000031936	SAFB2	100	64.958	Aotus_nancymaae
MGP_SPRETEiJ_G0022690	Safb2	100	58.938	ENSBTAG00000001790	SAFB2	100	61.450	Bos_taurus
MGP_SPRETEiJ_G0022690	Safb2	100	62.703	ENSCJAG00000017205	-	98	60.550	Callithrix_jacchus
MGP_SPRETEiJ_G0022690	Safb2	99	63.309	ENSCAFG00000018814	SAFB2	99	65.016	Canis_familiaris
MGP_SPRETEiJ_G0022690	Safb2	99	63.244	ENSCAFG00020018939	SAFB2	99	62.218	Canis_lupus_dingo
MGP_SPRETEiJ_G0022690	Safb2	100	59.706	ENSCHIG00000024547	SAFB2	100	61.029	Capra_hircus
MGP_SPRETEiJ_G0022690	Safb2	89	54.237	ENSCAPG00000011771	SAFB2	87	55.874	Cavia_aperea
MGP_SPRETEiJ_G0022690	Safb2	98	68.795	ENSCPOG00000011394	SAFB2	91	69.041	Cavia_porcellus
MGP_SPRETEiJ_G0022690	Safb2	100	62.487	ENSCCAG00000017348	SAFB2	100	64.361	Cebus_capucinus
MGP_SPRETEiJ_G0022690	Safb2	100	61.704	ENSCATG00000039497	SAFB2	100	63.560	Cercocebus_atys
MGP_SPRETEiJ_G0022690	Safb2	100	62.360	ENSCSAG00000009959	SAFB2	100	64.331	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0022690	Safb2	73	51.902	ENSCHOG00000010684	SAFB2	99	52.095	Choloepus_hoffmanni
MGP_SPRETEiJ_G0022690	Safb2	100	62.162	ENSCANG00000024675	SAFB2	100	60.532	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0022690	Safb2	100	81.100	ENSCGRG00001015833	Safb2	93	81.100	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0022690	Safb2	100	81.100	ENSCGRG00000011131	Safb2	93	81.100	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0022690	Safb2	95	58.684	ENSDORG00000016199	Safb2	100	59.243	Dipodomys_ordii
MGP_SPRETEiJ_G0022690	Safb2	98	59.551	ENSETEG00000016756	-	50	78.475	Echinops_telfairi
MGP_SPRETEiJ_G0022690	Safb2	89	58.864	ENSEASG00005022952	SAFB2	84	67.668	Equus_asinus_asinus
MGP_SPRETEiJ_G0022690	Safb2	98	60.685	ENSECAG00000018978	SAFB2	93	67.618	Equus_caballus
MGP_SPRETEiJ_G0022690	Safb2	99	62.076	ENSFCAG00000011834	SAFB2	99	64.482	Felis_catus
MGP_SPRETEiJ_G0022690	Safb2	100	55.676	ENSFDAG00000020009	SAFB2	100	57.837	Fukomys_damarensis
MGP_SPRETEiJ_G0022690	Safb2	99	60.637	ENSGGOG00000015093	SAFB2	99	61.910	Gorilla_gorilla
MGP_SPRETEiJ_G0022690	Safb2	100	59.116	ENSLAFG00000003836	SAFB2	99	57.554	Loxodonta_africana
MGP_SPRETEiJ_G0022690	Safb2	100	62.359	ENSMFAG00000039706	SAFB2	100	64.226	Macaca_fascicularis
MGP_SPRETEiJ_G0022690	Safb2	100	62.564	ENSMMUG00000017968	SAFB2	100	64.435	Macaca_mulatta
MGP_SPRETEiJ_G0022690	Safb2	100	62.162	ENSMNEG00000032042	SAFB2	100	59.375	Macaca_nemestrina
MGP_SPRETEiJ_G0022690	Safb2	100	62.462	ENSMLEG00000034562	SAFB2	100	64.331	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0022690	Safb2	99	82.486	ENSMAUG00000011573	Safb2	94	84.507	Mesocricetus_auratus
MGP_SPRETEiJ_G0022690	Safb2	100	62.959	ENSMICG00000008711	SAFB2	99	63.903	Microcebus_murinus
MGP_SPRETEiJ_G0022690	Safb2	99	80.226	ENSMOCG00000006827	Safb2	100	73.717	Microtus_ochrogaster
MGP_SPRETEiJ_G0022690	Safb2	98	55.802	ENSMODG00000001178	SAFB2	89	63.429	Monodelphis_domestica
MGP_SPRETEiJ_G0022690	Safb2	100	97.765	MGP_CAROLIEiJ_G0021779	Safb2	100	97.765	Mus_caroli
MGP_SPRETEiJ_G0022690	Safb2	100	99.533	ENSMUSG00000042625	Safb2	100	99.533	Mus_musculus
MGP_SPRETEiJ_G0022690	Safb2	100	95.794	MGP_PahariEiJ_G0020768	Safb2	100	95.794	Mus_pahari
MGP_SPRETEiJ_G0022690	Safb2	99	64.625	ENSMPUG00000006106	SAFB2	92	65.608	Mustela_putorius_furo
MGP_SPRETEiJ_G0022690	Safb2	97	64.571	ENSMLUG00000001050	SAFB2	99	57.187	Myotis_lucifugus
MGP_SPRETEiJ_G0022690	Safb2	100	61.813	ENSNLEG00000013514	SAFB2	100	64.084	Nomascus_leucogenys
MGP_SPRETEiJ_G0022690	Safb2	94	51.397	ENSMEUG00000002456	SAFB2	89	60.217	Notamacropus_eugenii
MGP_SPRETEiJ_G0022690	Safb2	100	55.781	ENSOPRG00000011523	-	100	55.781	Ochotona_princeps
MGP_SPRETEiJ_G0022690	Safb2	56	41.322	ENSOANG00000013644	-	68	53.591	Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0022690	Safb2	56	46.774	ENSOCUG00000001592	-	98	45.714	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0022690	Safb2	100	62.162	ENSOGAG00000006855	SAFB2	100	63.285	Otolemur_garnettii
MGP_SPRETEiJ_G0022690	Safb2	97	58.857	ENSOARG00000007982	SAFB2	67	56.129	Ovis_aries
MGP_SPRETEiJ_G0022690	Safb2	100	62.258	ENSPPAG00000043392	SAFB2	100	64.226	Pan_paniscus
MGP_SPRETEiJ_G0022690	Safb2	99	61.973	ENSPPRG00000011310	SAFB2	99	61.254	Panthera_pardus
MGP_SPRETEiJ_G0022690	Safb2	80	61.751	ENSPTIG00000015120	SAFB2	90	63.594	Panthera_tigris_altaica
MGP_SPRETEiJ_G0022690	Safb2	100	63.347	ENSPTRG00000010334	SAFB2	100	64.599	Pan_troglodytes
MGP_SPRETEiJ_G0022690	Safb2	100	62.359	ENSPANG00000007004	SAFB2	100	64.226	Papio_anubis
MGP_SPRETEiJ_G0022690	Safb2	100	80.392	ENSPEMG00000016015	Safb2	93	79.972	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0022690	Safb2	63	69.069	ENSPCIG00000009518	-	96	71.264	Phascolarctos_cinereus
MGP_SPRETEiJ_G0022690	Safb2	100	62.360	ENSPPYG00000009427	SAFB2	100	64.226	Pongo_abelii
MGP_SPRETEiJ_G0022690	Safb2	100	57.508	ENSPCAG00000006352	SAFB2	99	57.099	Procavia_capensis
MGP_SPRETEiJ_G0022690	Safb2	99	62.332	ENSPCOG00000023260	SAFB2	99	63.163	Propithecus_coquereli
MGP_SPRETEiJ_G0022690	Safb2	100	61.081	ENSPVAG00000004902	-	65	80.435	Pteropus_vampyrus
MGP_SPRETEiJ_G0022690	Safb2	94	82.143	ENSRNOG00000049511	AABR07066522.1	90	79.496	Rattus_norvegicus
MGP_SPRETEiJ_G0022690	Safb2	86	77.487	ENSRBIG00000033446	SAFB2	100	78.010	Rhinopithecus_bieti
MGP_SPRETEiJ_G0022690	Safb2	100	62.564	ENSRROG00000006606	SAFB2	100	64.435	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0022690	Safb2	100	62.256	ENSSBOG00000032315	SAFB2	100	63.536	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0022690	Safb2	97	55.867	ENSSHAG00000012703	SAFB2	89	63.524	Sarcophilus_harrisii
MGP_SPRETEiJ_G0022690	Safb2	100	63.608	ENSSSCG00000013523	SAFB2	100	60.774	Sus_scrofa
MGP_SPRETEiJ_G0022690	Safb2	76	47.826	ENSTBEG00000012709	SAFB2	85	47.573	Tupaia_belangeri
MGP_SPRETEiJ_G0022690	Safb2	94	56.052	ENSTTRG00000013585	SAFB2	93	57.303	Tursiops_truncatus
MGP_SPRETEiJ_G0022690	Safb2	99	71.223	ENSUAMG00000024695	SAFB2	99	63.142	Ursus_americanus
MGP_SPRETEiJ_G0022690	Safb2	92	56.024	ENSUMAG00000009585	SAFB2	85	62.162	Ursus_maritimus
MGP_SPRETEiJ_G0022690	Safb2	63	76.562	ENSVPAG00000012041	SAFB2	79	78.626	Vicugna_pacos
MGP_SPRETEiJ_G0022690	Safb2	99	63.450	ENSVVUG00000013695	SAFB2	99	63.197	Vulpes_vulpes