EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0023792 (Gene tree)
Gene ID: -
Gene Symbol: A1cf
Alias: 1810073H04Rik|ACF|apobec-1 complementation factor
Full Name: APOBEC1 complementation factor
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Plus strand
Length: 82963 bases
Position: chr19:29352463-29435425
Accession: 1917115
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0050559	DND1_DSRM	PF14709.7	2e-25	1	1
MGP_SPRETEiJ_P0050559	RRM_1	PF00076.22	2.2e-39	1	3
MGP_SPRETEiJ_P0050559	RRM_1	PF00076.22	2.2e-39	2	3
MGP_SPRETEiJ_P0050559	RRM_1	PF00076.22	2.2e-39	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0050558	-	6863	-	MGP_SPRETEiJ_P0050558	585 (aa)	-	-
MGP_SPRETEiJ_T0050559	-	3835	-	MGP_SPRETEiJ_P0050559	593 (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0023792's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0023792's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_SPRETEiJ_G0023792	A1cf	52	53.398	MGP_SPRETEiJ_G0033648	Syncrip	58	52.308
MGP_SPRETEiJ_G0023792	A1cf	96	70.064	MGP_SPRETEiJ_G0026043	Rbm46	99	70.064
MGP_SPRETEiJ_G0023792	A1cf	76	57.479	MGP_SPRETEiJ_G0028253	Rbm47	89	67.376

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0023792	A1cf	100	93.109	ENSG00000148584	A1CF	100	97.015	Homo_sapiens
MGP_SPRETEiJ_G0023792	A1cf	100	73.356	ENSAPOG00000008259	a1cf	100	73.187	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0023792	A1cf	100	91.429	ENSAMEG00000000523	A1CF	100	91.765	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0023792	A1cf	100	75.372	ENSACIG00000008632	a1cf	100	76.694	Amphilophus_citrinellus
MGP_SPRETEiJ_G0023792	A1cf	100	74.043	ENSAOCG00000023744	a1cf	93	84.384	Amphiprion_ocellaris
MGP_SPRETEiJ_G0023792	A1cf	100	74.056	ENSAPEG00000009537	a1cf	100	74.713	Amphiprion_percula
MGP_SPRETEiJ_G0023792	A1cf	100	75.331	ENSATEG00000013720	a1cf	100	76.656	Anabas_testudineus
MGP_SPRETEiJ_G0023792	A1cf	100	86.577	ENSAPLG00000002964	A1CF	100	86.242	Anas_platyrhynchos
MGP_SPRETEiJ_G0023792	A1cf	100	83.305	ENSACAG00000015269	A1CF	100	82.624	Anolis_carolinensis
MGP_SPRETEiJ_G0023792	A1cf	100	93.356	ENSANAG00000019974	A1CF	100	93.015	Aotus_nancymaae
MGP_SPRETEiJ_G0023792	A1cf	100	73.422	ENSACLG00000017428	a1cf	100	75.083	Astatotilapia_calliptera
MGP_SPRETEiJ_G0023792	A1cf	100	72.893	ENSAMXG00000018180	a1cf	100	73.223	Astyanax_mexicanus
MGP_SPRETEiJ_G0023792	A1cf	100	92.504	ENSBTAG00000021195	A1CF	100	93.494	Bos_taurus
MGP_SPRETEiJ_G0023792	A1cf	100	93.445	ENSCJAG00000005045	A1CF	100	93.109	Callithrix_jacchus
MGP_SPRETEiJ_G0023792	A1cf	100	90.588	ENSCAFG00000015581	A1CF	100	91.597	Canis_familiaris
MGP_SPRETEiJ_G0023792	A1cf	100	90.588	ENSCAFG00020026421	A1CF	100	91.597	Canis_lupus_dingo
MGP_SPRETEiJ_G0023792	A1cf	100	91.765	ENSCHIG00000020411	A1CF	100	91.765	Capra_hircus
MGP_SPRETEiJ_G0023792	A1cf	95	91.312	ENSTSYG00000001755	A1CF	100	91.877	Carlito_syrichta
MGP_SPRETEiJ_G0023792	A1cf	100	82.353	ENSCAPG00000017386	A1CF	100	82.353	Cavia_aperea
MGP_SPRETEiJ_G0023792	A1cf	100	92.269	ENSCPOG00000009807	A1CF	100	92.101	Cavia_porcellus
MGP_SPRETEiJ_G0023792	A1cf	100	93.277	ENSCCAG00000018168	A1CF	100	92.941	Cebus_capucinus
MGP_SPRETEiJ_G0023792	A1cf	100	93.186	ENSCATG00000043715	A1CF	100	92.675	Cercocebus_atys
MGP_SPRETEiJ_G0023792	A1cf	100	92.785	ENSCLAG00000010424	A1CF	100	92.785	Chinchilla_lanigera
MGP_SPRETEiJ_G0023792	A1cf	100	93.277	ENSCSAG00000007032	A1CF	100	92.773	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0023792	A1cf	98	87.285	ENSCHOG00000009089	A1CF	98	87.457	Choloepus_hoffmanni
MGP_SPRETEiJ_G0023792	A1cf	100	86.577	ENSCPBG00000026464	A1CF	100	86.409	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0023792	A1cf	100	93.277	ENSCANG00000038032	A1CF	100	92.773	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0023792	A1cf	100	95.630	ENSCGRG00001017413	A1cf	100	95.630	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0023792	A1cf	100	94.790	ENSCGRG00000017332	A1cf	100	94.790	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0023792	A1cf	100	74.129	ENSCSEG00000002361	a1cf	100	75.456	Cynoglossus_semilaevis
MGP_SPRETEiJ_G0023792	A1cf	100	75.000	ENSCVAG00000010520	a1cf	100	76.490	Cyprinodon_variegatus
MGP_SPRETEiJ_G0023792	A1cf	100	77.834	ENSDARG00000002968	a1cf	100	79.357	Danio_rerio
MGP_SPRETEiJ_G0023792	A1cf	100	91.261	ENSDNOG00000002829	A1CF	100	91.261	Dasypus_novemcinctus
MGP_SPRETEiJ_G0023792	A1cf	82	91.304	ENSETEG00000012527	A1CF	81	91.304	Echinops_telfairi
MGP_SPRETEiJ_G0023792	A1cf	100	92.630	ENSEASG00005012924	A1CF	100	92.965	Equus_asinus_asinus
MGP_SPRETEiJ_G0023792	A1cf	100	92.127	ENSECAG00000010424	A1CF	100	92.462	Equus_caballus
MGP_SPRETEiJ_G0023792	A1cf	78	79.739	ENSEEUG00000000013	A1CF	97	80.856	Erinaceus_europaeus
MGP_SPRETEiJ_G0023792	A1cf	100	77.537	ENSELUG00000003159	a1cf	100	78.369	Esox_lucius
MGP_SPRETEiJ_G0023792	A1cf	100	90.290	ENSFCAG00000011179	A1CF	100	90.630	Felis_catus
MGP_SPRETEiJ_G0023792	A1cf	100	85.544	ENSFALG00000013183	A1CF	100	85.204	Ficedula_albicollis
MGP_SPRETEiJ_G0023792	A1cf	100	91.993	ENSFDAG00000019371	A1CF	100	91.993	Fukomys_damarensis
MGP_SPRETEiJ_G0023792	A1cf	100	69.702	ENSFHEG00000019652	a1cf	96	82.031	Fundulus_heteroclitus
MGP_SPRETEiJ_G0023792	A1cf	100	71.026	ENSGMOG00000018943	a1cf	100	71.026	Gadus_morhua
MGP_SPRETEiJ_G0023792	A1cf	95	85.133	ENSGALG00000003765	A1CF	97	84.956	Gallus_gallus
MGP_SPRETEiJ_G0023792	A1cf	100	70.432	ENSGAFG00000014868	a1cf	100	71.429	Gambusia_affinis
MGP_SPRETEiJ_G0023792	A1cf	100	73.563	ENSGACG00000010241	a1cf	100	73.563	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0023792	A1cf	94	86.146	ENSGAGG00000016508	A1CF	97	85.968	Gopherus_agassizii
MGP_SPRETEiJ_G0023792	A1cf	100	92.941	ENSGGOG00000009670	A1CF	100	92.941	Gorilla_gorilla
MGP_SPRETEiJ_G0023792	A1cf	100	74.752	ENSHBUG00000021959	a1cf	100	76.733	Haplochromis_burtoni
MGP_SPRETEiJ_G0023792	A1cf	100	92.773	ENSHGLG00000008955	A1CF	100	92.773	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0023792	A1cf	100	92.101	ENSHGLG00100000518	A1CF	100	92.101	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0023792	A1cf	100	70.244	ENSHCOG00000017669	a1cf	100	72.195	Hippocampus_comes
MGP_SPRETEiJ_G0023792	A1cf	89	82.090	ENSIPUG00000010367	a1cf	96	82.090	Ictalurus_punctatus
MGP_SPRETEiJ_G0023792	A1cf	100	75.610	ENSKMAG00000006568	a1cf	100	76.423	Kryptolebias_marmoratus
MGP_SPRETEiJ_G0023792	A1cf	99	74.056	ENSLBEG00000020994	a1cf	98	75.534	Labrus_bergylta
MGP_SPRETEiJ_G0023792	A1cf	100	80.711	ENSLACG00000008061	A1CF	100	80.372	Latimeria_chalumnae
MGP_SPRETEiJ_G0023792	A1cf	100	80.333	ENSLOCG00000006302	a1cf	100	80.167	Lepisosteus_oculatus
MGP_SPRETEiJ_G0023792	A1cf	100	91.429	ENSLAFG00000015462	A1CF	100	91.765	Loxodonta_africana
MGP_SPRETEiJ_G0023792	A1cf	100	93.186	ENSMFAG00000035948	A1CF	100	92.675	Macaca_fascicularis
MGP_SPRETEiJ_G0023792	A1cf	100	93.186	ENSMMUG00000007077	A1CF	100	92.675	Macaca_mulatta
MGP_SPRETEiJ_G0023792	A1cf	100	93.015	ENSMNEG00000031454	A1CF	100	92.504	Macaca_nemestrina
MGP_SPRETEiJ_G0023792	A1cf	100	93.277	ENSMLEG00000037223	A1CF	100	92.773	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0023792	A1cf	100	72.968	ENSMAMG00000010402	a1cf	100	75.290	Mastacembelus_armatus
MGP_SPRETEiJ_G0023792	A1cf	100	75.541	ENSMZEG00005013245	a1cf	100	76.539	Maylandia_zebra
MGP_SPRETEiJ_G0023792	A1cf	100	85.427	ENSMGAG00000001507	A1CF	100	85.260	Meleagris_gallopavo
MGP_SPRETEiJ_G0023792	A1cf	100	94.958	ENSMAUG00000007422	A1cf	100	94.958	Mesocricetus_auratus
MGP_SPRETEiJ_G0023792	A1cf	100	91.356	ENSMICG00000003377	A1CF	100	91.695	Microcebus_murinus
MGP_SPRETEiJ_G0023792	A1cf	100	95.294	ENSMOCG00000021536	A1cf	100	95.294	Microtus_ochrogaster
MGP_SPRETEiJ_G0023792	A1cf	100	67.442	ENSMMOG00000009422	a1cf	100	69.052	Mola_mola
MGP_SPRETEiJ_G0023792	A1cf	92	88.683	ENSMODG00000016478	A1CF	97	90.403	Monodelphis_domestica
MGP_SPRETEiJ_G0023792	A1cf	100	73.051	ENSMALG00000012992	a1cf	100	72.712	Monopterus_albus
MGP_SPRETEiJ_G0023792	A1cf	100	99.496	MGP_CAROLIEiJ_G0022873	A1cf	100	99.496	Mus_caroli
MGP_SPRETEiJ_G0023792	A1cf	100	99.496	ENSMUSG00000052595	A1cf	100	99.496	Mus_musculus
MGP_SPRETEiJ_G0023792	A1cf	100	98.319	MGP_PahariEiJ_G0014366	A1cf	100	98.319	Mus_pahari
MGP_SPRETEiJ_G0023792	A1cf	100	85.882	ENSMPUG00000016971	A1CF	100	85.882	Mustela_putorius_furo
MGP_SPRETEiJ_G0023792	A1cf	100	91.261	ENSMLUG00000016071	A1CF	100	91.261	Myotis_lucifugus
MGP_SPRETEiJ_G0023792	A1cf	100	94.286	ENSNGAG00000015136	A1cf	100	94.286	Nannospalax_galili
MGP_SPRETEiJ_G0023792	A1cf	100	75.083	ENSNBRG00000001712	a1cf	100	77.063	Neolamprologus_brichardi
MGP_SPRETEiJ_G0023792	A1cf	100	93.613	ENSNLEG00000012028	A1CF	100	93.613	Nomascus_leucogenys
MGP_SPRETEiJ_G0023792	A1cf	94	86.847	ENSMEUG00000015909	A1CF	100	86.667	Notamacropus_eugenii
MGP_SPRETEiJ_G0023792	A1cf	89	82.476	ENSOPRG00000010667	A1CF	97	82.453	Ochotona_princeps
MGP_SPRETEiJ_G0023792	A1cf	100	75.413	ENSONIG00000019105	a1cf	100	76.568	Oreochromis_niloticus
MGP_SPRETEiJ_G0023792	A1cf	78	87.582	ENSOANG00000007360	A1CF	99	87.582	Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0023792	A1cf	100	90.816	ENSOCUG00000011587	A1CF	100	91.497	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0023792	A1cf	100	72.638	ENSORLG00000013342	a1cf	100	72.313	Oryzias_latipes
MGP_SPRETEiJ_G0023792	A1cf	100	73.246	ENSORLG00020000586	a1cf	100	73.290	Oryzias_latipes_hni
MGP_SPRETEiJ_G0023792	A1cf	100	73.083	ENSORLG00015018569	a1cf	100	73.127	Oryzias_latipes_hsok
MGP_SPRETEiJ_G0023792	A1cf	100	73.632	ENSOMEG00000013531	a1cf	100	73.632	Oryzias_melastigma
MGP_SPRETEiJ_G0023792	A1cf	100	91.092	ENSOGAG00000012884	A1CF	100	91.429	Otolemur_garnettii
MGP_SPRETEiJ_G0023792	A1cf	100	91.933	ENSOARG00000013695	A1CF	100	91.933	Ovis_aries
MGP_SPRETEiJ_G0023792	A1cf	97	90.815	ENSPPAG00000028115	A1CF	100	95.547	Pan_paniscus
MGP_SPRETEiJ_G0023792	A1cf	100	90.420	ENSPPRG00000012180	A1CF	100	90.756	Panthera_pardus
MGP_SPRETEiJ_G0023792	A1cf	100	90.420	ENSPTIG00000021223	A1CF	100	90.756	Panthera_tigris_altaica
MGP_SPRETEiJ_G0023792	A1cf	100	92.773	ENSPTRG00000002508	A1CF	100	92.773	Pan_troglodytes
MGP_SPRETEiJ_G0023792	A1cf	100	93.186	ENSPANG00000021988	A1CF	100	92.675	Papio_anubis
MGP_SPRETEiJ_G0023792	A1cf	100	79.035	ENSPKIG00000025176	a1cf	100	79.201	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0023792	A1cf	100	86.395	ENSPSIG00000010318	A1CF	100	85.884	Pelodiscus_sinensis
MGP_SPRETEiJ_G0023792	A1cf	88	72.147	ENSPMGG00000013359	a1cf	99	68.576	Periophthalmus_magnuspinnatus
MGP_SPRETEiJ_G0023792	A1cf	100	95.630	ENSPEMG00000015021	A1cf	100	95.630	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0023792	A1cf	100	86.224	ENSPCIG00000002175	A1CF	100	86.224	Phascolarctos_cinereus
MGP_SPRETEiJ_G0023792	A1cf	100	74.919	ENSPFOG00000007437	-	100	76.384	Poecilia_formosa
MGP_SPRETEiJ_G0023792	A1cf	100	75.081	ENSPFOG00000006683	a1cf	100	76.547	Poecilia_formosa
MGP_SPRETEiJ_G0023792	A1cf	100	74.752	ENSPLAG00000001210	-	100	76.238	Poecilia_latipinna
MGP_SPRETEiJ_G0023792	A1cf	100	74.752	ENSPLAG00000000026	a1cf	100	76.238	Poecilia_latipinna
MGP_SPRETEiJ_G0023792	A1cf	100	67.219	ENSPMEG00000000921	a1cf	100	68.709	Poecilia_mexicana
MGP_SPRETEiJ_G0023792	A1cf	100	67.484	ENSPMEG00000015529	-	100	68.954	Poecilia_mexicana
MGP_SPRETEiJ_G0023792	A1cf	100	74.593	ENSPREG00000016298	a1cf	100	76.059	Poecilia_reticulata
MGP_SPRETEiJ_G0023792	A1cf	100	93.356	ENSPPYG00000002819	A1CF	100	93.356	Pongo_abelii
MGP_SPRETEiJ_G0023792	A1cf	79	71.983	ENSPCAG00000006463	A1CF	70	81.633	Procavia_capensis
MGP_SPRETEiJ_G0023792	A1cf	100	91.946	ENSPCOG00000024172	A1CF	100	92.450	Propithecus_coquereli
MGP_SPRETEiJ_G0023792	A1cf	100	75.081	ENSPNYG00000017944	a1cf	100	77.036	Pundamilia_nyererei
MGP_SPRETEiJ_G0023792	A1cf	100	79.362	ENSPNAG00000007704	a1cf	100	79.362	Pygocentrus_nattereri
MGP_SPRETEiJ_G0023792	A1cf	100	97.615	ENSRNOG00000033195	A1cf	100	97.615	Rattus_norvegicus
MGP_SPRETEiJ_G0023792	A1cf	100	86.767	ENSRBIG00000042892	A1CF	100	90.656	Rhinopithecus_bieti
MGP_SPRETEiJ_G0023792	A1cf	100	93.277	ENSRROG00000041398	A1CF	100	92.773	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0023792	A1cf	100	93.592	ENSSBOG00000021930	A1CF	100	93.592	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0023792	A1cf	100	86.577	ENSSHAG00000005096	A1CF	100	86.409	Sarcophilus_harrisii
MGP_SPRETEiJ_G0023792	A1cf	100	78.319	ENSSFOG00015011774	a1cf	100	78.319	Scleropages_formosus
MGP_SPRETEiJ_G0023792	A1cf	100	74.593	ENSSMAG00000013271	a1cf	100	74.919	Scophthalmus_maximus
MGP_SPRETEiJ_G0023792	A1cf	100	75.541	ENSSDUG00000013930	a1cf	100	76.539	Seriola_dumerili
MGP_SPRETEiJ_G0023792	A1cf	100	69.128	ENSSLDG00000004290	a1cf	100	70.134	Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0023792	A1cf	95	81.541	ENSSARG00000005940	A1CF	96	81.541	Sorex_araneus
MGP_SPRETEiJ_G0023792	A1cf	95	84.886	ENSSPUG00000006797	A1CF	95	84.886	Sphenodon_punctatus
MGP_SPRETEiJ_G0023792	A1cf	100	92.605	ENSSSCG00000010431	A1CF	100	92.605	Sus_scrofa
MGP_SPRETEiJ_G0023792	A1cf	100	85.953	ENSTGUG00000005090	A1CF	100	85.619	Taeniopygia_guttata
MGP_SPRETEiJ_G0023792	A1cf	100	73.736	ENSTRUG00000001982	a1cf	100	73.736	Takifugu_rubripes
MGP_SPRETEiJ_G0023792	A1cf	100	74.309	ENSTNIG00000003580	a1cf	100	74.309	Tetraodon_nigroviridis
MGP_SPRETEiJ_G0023792	A1cf	97	84.710	ENSTTRG00000013190	A1CF	95	84.710	Tursiops_truncatus
MGP_SPRETEiJ_G0023792	A1cf	100	91.482	ENSUAMG00000020065	A1CF	100	91.652	Ursus_americanus
MGP_SPRETEiJ_G0023792	A1cf	100	91.261	ENSUMAG00000011162	A1CF	100	91.429	Ursus_maritimus
MGP_SPRETEiJ_G0023792	A1cf	87	88.304	ENSVPAG00000006130	A1CF	86	88.304	Vicugna_pacos
MGP_SPRETEiJ_G0023792	A1cf	100	91.482	ENSVVUG00000002504	A1CF	100	91.652	Vulpes_vulpes
MGP_SPRETEiJ_G0023792	A1cf	100	76.667	ENSXETG00000006611	a1cf	100	76.333	Xenopus_tropicalis
MGP_SPRETEiJ_G0023792	A1cf	100	76.080	ENSXCOG00000003302	a1cf	100	77.076	Xiphophorus_couchianus
MGP_SPRETEiJ_G0023792	A1cf	100	76.230	ENSXMAG00000016703	a1cf	100	77.213	Xiphophorus_maculatus