EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0024021 (Gene tree)
Gene ID: -
Gene Symbol: Trub1
Alias: 2610009I02Rik|9030425C13Rik
Full Name: TruB pseudouridine (psi) synthase family member 1
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Plus strand
Length: 39298 bases
Position: chr19:55644722-55684019
Accession: 1919383
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0051263	TruB_N	PF01509.18	5.9e-51	1	1
MGP_SPRETEiJ_P0051264	TruB_N	PF01509.18	6.4e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0051265	-	630	-	MGP_SPRETEiJ_P0051265	148 (aa)	-	-
MGP_SPRETEiJ_T0051264	-	4310	-	MGP_SPRETEiJ_P0051264	247 (aa)	-	-
MGP_SPRETEiJ_T0051263	-	3788	-	MGP_SPRETEiJ_P0051263	338 (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0024021's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0024021's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_SPRETEiJ_G0024021	Trub1	62	33.333	MGP_SPRETEiJ_G0024286	Trub2	68	33.040

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0024021	Trub1	99	80.229	ENSG00000165832	TRUB1	99	80.229	Homo_sapiens
MGP_SPRETEiJ_G0024021	Trub1	74	68.306	ENSAPOG00000020565	trub1	90	67.611	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0024021	Trub1	89	84.818	ENSAMEG00000014931	TRUB1	99	80.342	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0024021	Trub1	76	58.289	ENSACIG00000003060	trub1	81	61.570	Amphilophus_citrinellus
MGP_SPRETEiJ_G0024021	Trub1	75	66.667	ENSAOCG00000017188	trub1	88	68.182	Amphiprion_ocellaris
MGP_SPRETEiJ_G0024021	Trub1	79	64.796	ENSAPEG00000015209	trub1	88	67.769	Amphiprion_percula
MGP_SPRETEiJ_G0024021	Trub1	76	67.380	ENSATEG00000023291	trub1	85	67.647	Anabas_testudineus
MGP_SPRETEiJ_G0024021	Trub1	81	71.168	ENSAPLG00000006808	TRUB1	96	71.536	Anas_platyrhynchos
MGP_SPRETEiJ_G0024021	Trub1	81	68.364	ENSACAG00000009282	TRUB1	96	68.679	Anolis_carolinensis
MGP_SPRETEiJ_G0024021	Trub1	89	86.333	ENSANAG00000022870	TRUB1	99	79.943	Aotus_nancymaae
MGP_SPRETEiJ_G0024021	Trub1	79	63.590	ENSACLG00000000823	trub1	89	65.726	Astatotilapia_calliptera
MGP_SPRETEiJ_G0024021	Trub1	77	64.479	ENSAMXG00000015845	trub1	85	65.098	Astyanax_mexicanus
MGP_SPRETEiJ_G0024021	Trub1	89	85.099	ENSBTAG00000012955	TRUB1	100	78.977	Bos_taurus
MGP_SPRETEiJ_G0024021	Trub1	99	79.429	ENSCJAG00000047815	TRUB1	99	79.714	Callithrix_jacchus
MGP_SPRETEiJ_G0024021	Trub1	88	86.824	ENSCAFG00000011688	TRUB1	99	80.516	Canis_familiaris
MGP_SPRETEiJ_G0024021	Trub1	89	86.047	ENSCAFG00020013237	TRUB1	99	80.802	Canis_lupus_dingo
MGP_SPRETEiJ_G0024021	Trub1	89	85.430	ENSCHIG00000020884	TRUB1	100	78.632	Capra_hircus
MGP_SPRETEiJ_G0024021	Trub1	89	85.382	ENSTSYG00000000446	TRUB1	99	79.143	Carlito_syrichta
MGP_SPRETEiJ_G0024021	Trub1	66	87.654	ENSCAPG00000017088	TRUB1	99	76.285	Cavia_aperea
MGP_SPRETEiJ_G0024021	Trub1	94	77.869	ENSCPOG00000040236	-	100	78.689	Cavia_porcellus
MGP_SPRETEiJ_G0024021	Trub1	98	77.733	ENSCPOG00000030129	-	90	73.279	Cavia_porcellus
MGP_SPRETEiJ_G0024021	Trub1	89	86.047	ENSCCAG00000028842	TRUB1	99	79.714	Cebus_capucinus
MGP_SPRETEiJ_G0024021	Trub1	99	79.083	ENSCATG00000033431	TRUB1	99	80.229	Cercocebus_atys
MGP_SPRETEiJ_G0024021	Trub1	94	78.367	ENSCLAG00000008664	TRUB1	100	78.279	Chinchilla_lanigera
MGP_SPRETEiJ_G0024021	Trub1	99	79.083	ENSCSAG00000004891	TRUB1	99	80.229	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0024021	Trub1	100	66.571	ENSCHOG00000011931	TRUB1	86	72.517	Choloepus_hoffmanni
MGP_SPRETEiJ_G0024021	Trub1	80	74.539	ENSCPBG00000003051	TRUB1	92	74.157	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0024021	Trub1	99	79.083	ENSCANG00000029445	TRUB1	99	80.229	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0024021	Trub1	83	79.715	ENSCGRG00001010322	-	86	71.598	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0024021	Trub1	75	87.843	ENSCGRG00001016772	-	85	87.549	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0024021	Trub1	100	81.657	ENSCGRG00000010806	Trub1	100	82.840	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0024021	Trub1	76	64.171	ENSCSEG00000011261	trub1	93	57.143	Cynoglossus_semilaevis
MGP_SPRETEiJ_G0024021	Trub1	76	66.310	ENSCVAG00000008791	trub1	76	65.992	Cyprinodon_variegatus
MGP_SPRETEiJ_G0024021	Trub1	78	64.394	ENSDARG00000053805	trub1	89	64.615	Danio_rerio
MGP_SPRETEiJ_G0024021	Trub1	96	75.749	ENSDNOG00000001069	TRUB1	100	74.644	Dasypus_novemcinctus
MGP_SPRETEiJ_G0024021	Trub1	96	83.742	ENSDORG00000010431	Trub1	94	83.742	Dipodomys_ordii
MGP_SPRETEiJ_G0024021	Trub1	67	86.620	ENSETEG00000009183	TRUB1	61	88.806	Echinops_telfairi
MGP_SPRETEiJ_G0024021	Trub1	88	85.284	ENSEASG00005014739	TRUB1	100	80.286	Equus_asinus_asinus
MGP_SPRETEiJ_G0024021	Trub1	88	85.284	ENSECAG00000007177	TRUB1	100	80.286	Equus_caballus
MGP_SPRETEiJ_G0024021	Trub1	87	73.810	ENSEEUG00000013993	TRUB1	79	73.333	Erinaceus_europaeus
MGP_SPRETEiJ_G0024021	Trub1	82	65.347	ENSELUG00000000502	trub1	84	68.880	Esox_lucius
MGP_SPRETEiJ_G0024021	Trub1	89	86.000	ENSFCAG00000031927	TRUB1	99	81.556	Felis_catus
MGP_SPRETEiJ_G0024021	Trub1	71	71.784	ENSFALG00000002232	TRUB1	93	71.784	Ficedula_albicollis
MGP_SPRETEiJ_G0024021	Trub1	80	89.340	ENSFDAG00000008140	TRUB1	81	89.340	Fukomys_damarensis
MGP_SPRETEiJ_G0024021	Trub1	76	65.241	ENSFHEG00000004016	trub1	83	65.289	Fundulus_heteroclitus
MGP_SPRETEiJ_G0024021	Trub1	80	70.480	ENSGALG00000009091	TRUB1	94	70.412	Gallus_gallus
MGP_SPRETEiJ_G0024021	Trub1	76	64.362	ENSGAFG00000009193	trub1	85	64.315	Gambusia_affinis
MGP_SPRETEiJ_G0024021	Trub1	59	65.829	ENSGACG00000015387	trub1	98	65.829	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0024021	Trub1	86	71.034	ENSGAGG00000009758	TRUB1	76	74.906	Gopherus_agassizii
MGP_SPRETEiJ_G0024021	Trub1	99	79.943	ENSGGOG00000004583	TRUB1	99	79.943	Gorilla_gorilla
MGP_SPRETEiJ_G0024021	Trub1	82	62.069	ENSHBUG00000016787	trub1	89	65.726	Haplochromis_burtoni
MGP_SPRETEiJ_G0024021	Trub1	100	74.432	ENSHGLG00000015314	TRUB1	100	75.645	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0024021	Trub1	94	80.169	ENSHGLG00100009183	TRUB1	100	80.169	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0024021	Trub1	76	64.706	ENSHCOG00000017877	trub1	87	65.560	Hippocampus_comes
MGP_SPRETEiJ_G0024021	Trub1	79	64.552	ENSIPUG00000017559	trub1	93	64.528	Ictalurus_punctatus
MGP_SPRETEiJ_G0024021	Trub1	89	84.437	ENSSTOG00000003641	TRUB1	100	80.000	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0024021	Trub1	100	77.353	ENSJJAG00000011800	Trub1	100	75.146	Jaculus_jaculus
MGP_SPRETEiJ_G0024021	Trub1	76	64.171	ENSKMAG00000006232	trub1	91	63.636	Kryptolebias_marmoratus
MGP_SPRETEiJ_G0024021	Trub1	76	66.845	ENSLBEG00000026722	trub1	85	66.116	Labrus_bergylta
MGP_SPRETEiJ_G0024021	Trub1	82	70.290	ENSLACG00000014885	TRUB1	88	71.863	Latimeria_chalumnae
MGP_SPRETEiJ_G0024021	Trub1	78	69.057	ENSLOCG00000012979	trub1	87	69.261	Lepisosteus_oculatus
MGP_SPRETEiJ_G0024021	Trub1	96	77.273	ENSLAFG00000015452	TRUB1	99	73.926	Loxodonta_africana
MGP_SPRETEiJ_G0024021	Trub1	99	79.370	ENSMFAG00000031767	TRUB1	99	80.516	Macaca_fascicularis
MGP_SPRETEiJ_G0024021	Trub1	99	79.083	ENSMMUG00000001902	TRUB1	99	80.229	Macaca_mulatta
MGP_SPRETEiJ_G0024021	Trub1	99	74.785	ENSMNEG00000044646	TRUB1	99	75.931	Macaca_nemestrina
MGP_SPRETEiJ_G0024021	Trub1	99	79.370	ENSMLEG00000042655	TRUB1	99	80.229	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0024021	Trub1	79	63.590	ENSMZEG00005024095	trub1	89	65.726	Maylandia_zebra
MGP_SPRETEiJ_G0024021	Trub1	80	70.741	ENSMGAG00000011135	TRUB1	91	70.677	Meleagris_gallopavo
MGP_SPRETEiJ_G0024021	Trub1	100	81.657	ENSMAUG00000011101	Trub1	100	81.657	Mesocricetus_auratus
MGP_SPRETEiJ_G0024021	Trub1	100	79.656	ENSMICG00000016324	TRUB1	100	81.089	Microcebus_murinus
MGP_SPRETEiJ_G0024021	Trub1	100	82.249	ENSMOCG00000017759	Trub1	100	82.544	Microtus_ochrogaster
MGP_SPRETEiJ_G0024021	Trub1	79	82.090	ENSMODG00000009676	TRUB1	73	81.955	Monodelphis_domestica
MGP_SPRETEiJ_G0024021	Trub1	100	99.112	MGP_CAROLIEiJ_G0023100	Trub1	100	99.112	Mus_caroli
MGP_SPRETEiJ_G0024021	Trub1	100	99.112	ENSMUSG00000025086	Trub1	100	99.112	Mus_musculus
MGP_SPRETEiJ_G0024021	Trub1	100	96.746	MGP_PahariEiJ_G0014588	Trub1	100	96.746	Mus_pahari
MGP_SPRETEiJ_G0024021	Trub1	89	86.711	ENSMPUG00000003556	TRUB1	99	80.802	Mustela_putorius_furo
MGP_SPRETEiJ_G0024021	Trub1	95	81.250	ENSMLUG00000017686	TRUB1	99	78.363	Myotis_lucifugus
MGP_SPRETEiJ_G0024021	Trub1	100	79.885	ENSNGAG00000018682	Trub1	100	79.598	Nannospalax_galili
MGP_SPRETEiJ_G0024021	Trub1	76	64.706	ENSNBRG00000023393	trub1	86	66.529	Neolamprologus_brichardi
MGP_SPRETEiJ_G0024021	Trub1	88	85.570	ENSNLEG00000016345	TRUB1	99	79.656	Nomascus_leucogenys
MGP_SPRETEiJ_G0024021	Trub1	75	84.946	ENSMEUG00000006603	TRUB1	74	87.437	Notamacropus_eugenii
MGP_SPRETEiJ_G0024021	Trub1	89	79.139	ENSOPRG00000009371	TRUB1	100	74.709	Ochotona_princeps
MGP_SPRETEiJ_G0024021	Trub1	100	73.143	ENSODEG00000010854	TRUB1	82	82.456	Octodon_degus
MGP_SPRETEiJ_G0024021	Trub1	82	61.084	ENSONIG00000007249	trub1	90	65.323	Oreochromis_niloticus
MGP_SPRETEiJ_G0024021	Trub1	81	76.190	ENSOANG00000001556	TRUB1	88	76.404	Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0024021	Trub1	89	81.457	ENSOCUG00000009456	TRUB1	100	75.723	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0024021	Trub1	75	67.204	ENSORLG00000029719	trub1	85	67.647	Oryzias_latipes
MGP_SPRETEiJ_G0024021	Trub1	75	66.667	ENSORLG00020016767	trub1	84	67.227	Oryzias_latipes_hni
MGP_SPRETEiJ_G0024021	Trub1	75	66.667	ENSORLG00015014728	trub1	85	68.067	Oryzias_latipes_hsok
MGP_SPRETEiJ_G0024021	Trub1	82	64.532	ENSOMEG00000014556	trub1	84	66.946	Oryzias_melastigma
MGP_SPRETEiJ_G0024021	Trub1	89	86.424	ENSOGAG00000015895	TRUB1	100	80.571	Otolemur_garnettii
MGP_SPRETEiJ_G0024021	Trub1	87	83.775	ENSOARG00000015591	TRUB1	100	78.409	Ovis_aries
MGP_SPRETEiJ_G0024021	Trub1	99	80.229	ENSPPAG00000043645	TRUB1	99	80.229	Pan_paniscus
MGP_SPRETEiJ_G0024021	Trub1	89	85.667	ENSPPRG00000007096	TRUB1	99	81.268	Panthera_pardus
MGP_SPRETEiJ_G0024021	Trub1	89	86.000	ENSPTIG00000006378	TRUB1	99	81.556	Panthera_tigris_altaica
MGP_SPRETEiJ_G0024021	Trub1	99	80.229	ENSPTRG00000002964	TRUB1	99	80.229	Pan_troglodytes
MGP_SPRETEiJ_G0024021	Trub1	99	78.797	ENSPANG00000020712	TRUB1	99	79.943	Papio_anubis
MGP_SPRETEiJ_G0024021	Trub1	51	68.208	ENSPKIG00000003852	trub1	74	68.208	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0024021	Trub1	86	69.896	ENSPSIG00000012877	TRUB1	92	72.285	Pelodiscus_sinensis
MGP_SPRETEiJ_G0024021	Trub1	76	63.102	ENSPMGG00000000075	trub1	87	64.730	Periophthalmus_magnuspinnatus
MGP_SPRETEiJ_G0024021	Trub1	100	81.471	ENSPEMG00000011156	Trub1	100	82.353	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0024021	Trub1	85	78.322	ENSPCIG00000009729	TRUB1	77	78.169	Phascolarctos_cinereus
MGP_SPRETEiJ_G0024021	Trub1	76	66.310	ENSPFOG00000009950	trub1	89	65.323	Poecilia_formosa
MGP_SPRETEiJ_G0024021	Trub1	76	66.310	ENSPLAG00000013855	trub1	86	65.323	Poecilia_latipinna
MGP_SPRETEiJ_G0024021	Trub1	76	66.310	ENSPMEG00000009064	trub1	88	65.323	Poecilia_mexicana
MGP_SPRETEiJ_G0024021	Trub1	76	66.310	ENSPREG00000003343	trub1	88	65.726	Poecilia_reticulata
MGP_SPRETEiJ_G0024021	Trub1	96	80.655	ENSPPYG00000002676	TRUB1	99	79.943	Pongo_abelii
MGP_SPRETEiJ_G0024021	Trub1	79	85.204	ENSPCAG00000008427	TRUB1	80	74.648	Procavia_capensis
MGP_SPRETEiJ_G0024021	Trub1	89	80.132	ENSPCOG00000024360	TRUB1	100	75.645	Propithecus_coquereli
MGP_SPRETEiJ_G0024021	Trub1	80	89.340	ENSPVAG00000007575	TRUB1	100	83.650	Pteropus_vampyrus
MGP_SPRETEiJ_G0024021	Trub1	80	63.131	ENSPNYG00000018614	trub1	89	65.726	Pundamilia_nyererei
MGP_SPRETEiJ_G0024021	Trub1	72	59.836	ENSPNAG00000006881	trub1	77	59.751	Pygocentrus_nattereri
MGP_SPRETEiJ_G0024021	Trub1	100	91.202	ENSRNOG00000017321	Trub1	100	90.323	Rattus_norvegicus
MGP_SPRETEiJ_G0024021	Trub1	99	70.201	ENSRBIG00000033423	TRUB1	99	70.774	Rhinopithecus_bieti
MGP_SPRETEiJ_G0024021	Trub1	99	79.656	ENSRROG00000033902	TRUB1	99	80.229	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0024021	Trub1	96	81.250	ENSSBOG00000024237	TRUB1	99	79.714	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0024021	Trub1	75	76.562	ENSSHAG00000009346	TRUB1	86	76.562	Sarcophilus_harrisii
MGP_SPRETEiJ_G0024021	Trub1	79	63.402	ENSSFOG00015022124	trub1	82	67.782	Scleropages_formosus
MGP_SPRETEiJ_G0024021	Trub1	86	61.033	ENSSMAG00000001020	trub1	86	66.529	Scophthalmus_maximus
MGP_SPRETEiJ_G0024021	Trub1	73	67.403	ENSSDUG00000016414	trub1	87	66.942	Seriola_dumerili
MGP_SPRETEiJ_G0024021	Trub1	73	67.956	ENSSLDG00000015486	trub1	87	67.355	Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0024021	Trub1	80	75.646	ENSSPUG00000001642	TRUB1	92	75.655	Sphenodon_punctatus
MGP_SPRETEiJ_G0024021	Trub1	76	66.845	ENSSPAG00000001217	trub1	87	68.595	Stegastes_partitus
MGP_SPRETEiJ_G0024021	Trub1	100	77.143	ENSSSCG00000010653	TRUB1	100	77.143	Sus_scrofa
MGP_SPRETEiJ_G0024021	Trub1	80	71.747	ENSTGUG00000010971	TRUB1	95	71.536	Taeniopygia_guttata
MGP_SPRETEiJ_G0024021	Trub1	75	72.332	ENSTBEG00000002880	TRUB1	99	72.332	Tupaia_belangeri
MGP_SPRETEiJ_G0024021	Trub1	81	88.060	ENSTTRG00000005767	TRUB1	100	80.916	Tursiops_truncatus
MGP_SPRETEiJ_G0024021	Trub1	89	86.711	ENSUAMG00000024876	TRUB1	99	81.948	Ursus_americanus
MGP_SPRETEiJ_G0024021	Trub1	87	88.055	ENSUMAG00000002411	TRUB1	99	81.232	Ursus_maritimus
MGP_SPRETEiJ_G0024021	Trub1	100	77.714	ENSVPAG00000005507	TRUB1	100	78.857	Vicugna_pacos
MGP_SPRETEiJ_G0024021	Trub1	88	86.824	ENSVVUG00000010085	TRUB1	83	81.214	Vulpes_vulpes
MGP_SPRETEiJ_G0024021	Trub1	80	64.444	ENSXETG00000023828	trub1	96	64.662	Xenopus_tropicalis
MGP_SPRETEiJ_G0024021	Trub1	76	65.775	ENSXCOG00000017847	trub1	85	65.000	Xiphophorus_couchianus
MGP_SPRETEiJ_G0024021	Trub1	76	65.775	ENSXMAG00000014701	trub1	88	64.516	Xiphophorus_maculatus