EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0024061 (Gene tree)
Gene ID: -
Gene Symbol: Prpf18
Alias: 2810441A10Rik
Full Name: pre-mRNA processing factor 18
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Minus strand
Length: 28915 bases
Position: chr2:1640722-1669636
Accession: 1914479
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0051406	PRP4	PF08799.11	2.1e-14	1	1
MGP_SPRETEiJ_P0051403	PRP4	PF08799.11	1.8e-13	1	1
MGP_SPRETEiJ_P0051405	PRP4	PF08799.11	1.8e-13	1	1
MGP_SPRETEiJ_P0051403	Prp18	PF02840.15	9.4e-63	1	1
MGP_SPRETEiJ_P0051405	Prp18	PF02840.15	9.4e-63	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0051408	-	496	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0051403	-	3411	-	MGP_SPRETEiJ_P0051403	342 (aa)	-	-
MGP_SPRETEiJ_T0051407	-	551	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0051406	-	554	-	MGP_SPRETEiJ_P0051406	73 (aa)	-	UPI00053BD84E
MGP_SPRETEiJ_T0051405	-	1562	-	MGP_SPRETEiJ_P0051405	342 (aa)	-	-
MGP_SPRETEiJ_T0051404	-	3219	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0024061's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0024061's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0024061	Prpf18	100	100.000	ENSG00000165630	PRPF18	100	98.830	Homo_sapiens
MGP_SPRETEiJ_G0024061	Prpf18	100	95.890	ENSAPOG00000024177	prpf18	100	85.088	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0024061	Prpf18	100	98.630	ENSAMEG00000013591	-	100	98.246	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0024061	Prpf18	100	91.781	ENSACIG00000001186	prpf18	100	83.626	Amphilophus_citrinellus
MGP_SPRETEiJ_G0024061	Prpf18	100	95.890	ENSAOCG00000006572	prpf18	94	82.456	Amphiprion_ocellaris
MGP_SPRETEiJ_G0024061	Prpf18	100	95.890	ENSAPEG00000004564	prpf18	100	85.380	Amphiprion_percula
MGP_SPRETEiJ_G0024061	Prpf18	100	94.521	ENSATEG00000000303	prpf18	100	83.918	Anabas_testudineus
MGP_SPRETEiJ_G0024061	Prpf18	100	95.890	ENSAPLG00000003387	-	99	90.294	Anas_platyrhynchos
MGP_SPRETEiJ_G0024061	Prpf18	100	97.260	ENSACAG00000000818	-	100	91.279	Anolis_carolinensis
MGP_SPRETEiJ_G0024061	Prpf18	100	100.000	ENSANAG00000037445	-	100	98.246	Aotus_nancymaae
MGP_SPRETEiJ_G0024061	Prpf18	100	93.151	ENSACLG00000026296	prpf18	100	84.795	Astatotilapia_calliptera
MGP_SPRETEiJ_G0024061	Prpf18	100	95.890	ENSAMXG00000012848	prpf18	100	84.286	Astyanax_mexicanus
MGP_SPRETEiJ_G0024061	Prpf18	100	98.630	ENSBTAG00000017244	PRPF18	100	97.953	Bos_taurus
MGP_SPRETEiJ_G0024061	Prpf18	98	39.368	WBGene00009320	F32B6.3	97	39.368	Caenorhabditis_elegans
MGP_SPRETEiJ_G0024061	Prpf18	100	100.000	ENSCJAG00000009432	-	100	98.246	Callithrix_jacchus
MGP_SPRETEiJ_G0024061	Prpf18	100	98.630	ENSCAFG00000004735	-	100	98.246	Canis_familiaris
MGP_SPRETEiJ_G0024061	Prpf18	100	98.630	ENSCAFG00020007712	-	100	98.246	Canis_lupus_dingo
MGP_SPRETEiJ_G0024061	Prpf18	100	98.630	ENSCHIG00000000499	-	100	97.953	Capra_hircus
MGP_SPRETEiJ_G0024061	Prpf18	100	100.000	ENSTSYG00000003517	-	100	98.246	Carlito_syrichta
MGP_SPRETEiJ_G0024061	Prpf18	100	100.000	ENSCPOG00000021069	-	100	98.830	Cavia_porcellus
MGP_SPRETEiJ_G0024061	Prpf18	100	100.000	ENSCCAG00000036822	-	100	98.246	Cebus_capucinus
MGP_SPRETEiJ_G0024061	Prpf18	100	87.719	ENSCATG00000016633	-	100	87.719	Cercocebus_atys
MGP_SPRETEiJ_G0024061	Prpf18	100	100.000	ENSCLAG00000011770	-	100	97.953	Chinchilla_lanigera
MGP_SPRETEiJ_G0024061	Prpf18	100	100.000	ENSCSAG00000013109	-	100	96.296	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0024061	Prpf18	100	98.630	ENSCPBG00000003100	-	100	88.764	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0024061	Prpf18	100	64.384	ENSCING00000020481	-	97	55.000	Ciona_intestinalis
MGP_SPRETEiJ_G0024061	Prpf18	100	64.474	ENSCSAVG00000010546	-	99	54.467	Ciona_savignyi
MGP_SPRETEiJ_G0024061	Prpf18	100	100.000	ENSCANG00000034900	-	100	98.538	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0024061	Prpf18	100	100.000	ENSCGRG00001023665	Prpf18	100	98.830	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0024061	Prpf18	100	100.000	ENSCGRG00000014690	Prpf18	100	98.830	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0024061	Prpf18	100	94.521	ENSCSEG00000005536	prpf18	99	82.456	Cynoglossus_semilaevis
MGP_SPRETEiJ_G0024061	Prpf18	100	94.521	ENSCVAG00000012401	prpf18	100	83.918	Cyprinodon_variegatus
MGP_SPRETEiJ_G0024061	Prpf18	97	94.366	ENSDARG00000058306	prpf18	100	85.088	Danio_rerio
MGP_SPRETEiJ_G0024061	Prpf18	100	100.000	ENSDNOG00000035607	-	100	97.661	Dasypus_novemcinctus
MGP_SPRETEiJ_G0024061	Prpf18	100	100.000	ENSDORG00000000858	Prpf18	100	97.953	Dipodomys_ordii
MGP_SPRETEiJ_G0024061	Prpf18	99	51.032	FBgn0027784	Prp18	98	51.032	Drosophila_melanogaster
MGP_SPRETEiJ_G0024061	Prpf18	100	97.260	ENSETEG00000015060	-	100	87.427	Echinops_telfairi
MGP_SPRETEiJ_G0024061	Prpf18	100	78.082	ENSEBUG00000016502	prpf18	99	65.706	Eptatretus_burgeri
MGP_SPRETEiJ_G0024061	Prpf18	100	98.630	ENSEASG00005019373	-	100	98.538	Equus_asinus_asinus
MGP_SPRETEiJ_G0024061	Prpf18	100	98.630	ENSECAG00000006997	PRPF18	100	98.538	Equus_caballus
MGP_SPRETEiJ_G0024061	Prpf18	92	61.709	ENSEEUG00000001171	-	100	61.709	Erinaceus_europaeus
MGP_SPRETEiJ_G0024061	Prpf18	100	86.486	ENSELUG00000022190	prpf18	100	81.924	Esox_lucius
MGP_SPRETEiJ_G0024061	Prpf18	100	98.630	ENSFCAG00000004436	-	100	97.953	Felis_catus
MGP_SPRETEiJ_G0024061	Prpf18	100	97.260	ENSFALG00000001912	-	97	88.000	Ficedula_albicollis
MGP_SPRETEiJ_G0024061	Prpf18	99	64.348	ENSFDAG00000010713	-	97	64.348	Fukomys_damarensis
MGP_SPRETEiJ_G0024061	Prpf18	100	100.000	ENSFDAG00000014026	-	100	98.125	Fukomys_damarensis
MGP_SPRETEiJ_G0024061	Prpf18	100	94.521	ENSFHEG00000020125	prpf18	98	89.513	Fundulus_heteroclitus
MGP_SPRETEiJ_G0024061	Prpf18	100	89.041	ENSGMOG00000012210	prpf18	99	80.352	Gadus_morhua
MGP_SPRETEiJ_G0024061	Prpf18	100	95.890	ENSGALG00000043593	-	100	91.228	Gallus_gallus
MGP_SPRETEiJ_G0024061	Prpf18	100	94.521	ENSGAFG00000006034	prpf18	100	83.041	Gambusia_affinis
MGP_SPRETEiJ_G0024061	Prpf18	100	89.041	ENSGACG00000012232	prpf18	100	81.287	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0024061	Prpf18	100	98.630	ENSGAGG00000016878	-	100	92.105	Gopherus_agassizii
MGP_SPRETEiJ_G0024061	Prpf18	100	100.000	ENSGGOG00000025188	-	96	98.734	Gorilla_gorilla
MGP_SPRETEiJ_G0024061	Prpf18	100	93.151	ENSHBUG00000010264	prpf18	100	84.795	Haplochromis_burtoni
MGP_SPRETEiJ_G0024061	Prpf18	100	100.000	ENSHGLG00000018534	PRPF18	100	98.246	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0024061	Prpf18	100	100.000	ENSHGLG00100012161	-	98	98.438	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0024061	Prpf18	100	95.890	ENSHCOG00000015987	prpf18	100	84.503	Hippocampus_comes
MGP_SPRETEiJ_G0024061	Prpf18	100	94.521	ENSIPUG00000007432	prpf18	100	82.153	Ictalurus_punctatus
MGP_SPRETEiJ_G0024061	Prpf18	100	100.000	ENSSTOG00000008735	-	100	97.368	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0024061	Prpf18	100	100.000	ENSJJAG00000024041	-	100	98.830	Jaculus_jaculus
MGP_SPRETEiJ_G0024061	Prpf18	100	71.470	ENSJJAG00000015191	-	100	71.470	Jaculus_jaculus
MGP_SPRETEiJ_G0024061	Prpf18	100	91.781	ENSKMAG00000012124	prpf18	100	82.749	Kryptolebias_marmoratus
MGP_SPRETEiJ_G0024061	Prpf18	100	90.411	ENSLBEG00000028466	prpf18	99	82.840	Labrus_bergylta
MGP_SPRETEiJ_G0024061	Prpf18	100	93.151	ENSLACG00000009885	prpf18	100	86.257	Latimeria_chalumnae
MGP_SPRETEiJ_G0024061	Prpf18	100	97.260	ENSLOCG00000016736	prpf18	100	91.228	Lepisosteus_oculatus
MGP_SPRETEiJ_G0024061	Prpf18	100	100.000	ENSLAFG00000007753	-	100	98.830	Loxodonta_africana
MGP_SPRETEiJ_G0024061	Prpf18	100	100.000	ENSMFAG00000000540	-	100	98.830	Macaca_fascicularis
MGP_SPRETEiJ_G0024061	Prpf18	100	100.000	ENSMMUG00000015071	PRPF18	100	98.830	Macaca_mulatta
MGP_SPRETEiJ_G0024061	Prpf18	100	100.000	ENSMNEG00000024679	-	100	98.830	Macaca_nemestrina
MGP_SPRETEiJ_G0024061	Prpf18	100	100.000	ENSMLEG00000031715	-	100	83.626	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0024061	Prpf18	100	94.521	ENSMAMG00000006610	prpf18	100	83.333	Mastacembelus_armatus
MGP_SPRETEiJ_G0024061	Prpf18	100	93.151	ENSMZEG00005019392	prpf18	100	84.795	Maylandia_zebra
MGP_SPRETEiJ_G0024061	Prpf18	100	95.890	ENSMGAG00000005023	-	100	91.228	Meleagris_gallopavo
MGP_SPRETEiJ_G0024061	Prpf18	100	100.000	ENSMICG00000006572	-	100	98.538	Microcebus_murinus
MGP_SPRETEiJ_G0024061	Prpf18	100	100.000	ENSMOCG00000021468	Prpf18	100	98.830	Microtus_ochrogaster
MGP_SPRETEiJ_G0024061	Prpf18	100	93.151	ENSMMOG00000013012	prpf18	100	83.041	Mola_mola
MGP_SPRETEiJ_G0024061	Prpf18	100	98.630	ENSMODG00000016902	-	92	89.941	Monodelphis_domestica
MGP_SPRETEiJ_G0024061	Prpf18	100	84.795	ENSMODG00000024043	-	100	84.795	Monodelphis_domestica
MGP_SPRETEiJ_G0024061	Prpf18	100	95.890	ENSMALG00000005486	prpf18	100	78.261	Monopterus_albus
MGP_SPRETEiJ_G0024061	Prpf18	100	100.000	MGP_CAROLIEiJ_G0023143	Prpf18	100	100.000	Mus_caroli
MGP_SPRETEiJ_G0024061	Prpf18	100	100.000	ENSMUSG00000039449	Prpf18	100	100.000	Mus_musculus
MGP_SPRETEiJ_G0024061	Prpf18	100	100.000	MGP_PahariEiJ_G0019203	Prpf18	100	100.000	Mus_pahari
MGP_SPRETEiJ_G0024061	Prpf18	100	98.630	ENSMPUG00000000938	-	100	97.953	Mustela_putorius_furo
MGP_SPRETEiJ_G0024061	Prpf18	100	99.123	ENSMLUG00000009200	-	100	99.123	Myotis_lucifugus
MGP_SPRETEiJ_G0024061	Prpf18	100	98.630	ENSNGAG00000012500	-	100	98.246	Nannospalax_galili
MGP_SPRETEiJ_G0024061	Prpf18	67	92.174	ENSNGAG00000023550	-	82	92.174	Nannospalax_galili
MGP_SPRETEiJ_G0024061	Prpf18	100	93.151	ENSNBRG00000001778	prpf18	100	84.795	Neolamprologus_brichardi
MGP_SPRETEiJ_G0024061	Prpf18	100	100.000	ENSNLEG00000012186	-	100	98.830	Nomascus_leucogenys
MGP_SPRETEiJ_G0024061	Prpf18	89	89.231	ENSMEUG00000005032	-	100	65.497	Notamacropus_eugenii
MGP_SPRETEiJ_G0024061	Prpf18	77	80.000	ENSOPRG00000002153	-	100	80.000	Ochotona_princeps
MGP_SPRETEiJ_G0024061	Prpf18	100	98.630	ENSODEG00000003770	-	100	97.953	Octodon_degus
MGP_SPRETEiJ_G0024061	Prpf18	100	93.151	ENSONIG00000014854	prpf18	96	84.179	Oreochromis_niloticus
MGP_SPRETEiJ_G0024061	Prpf18	100	98.630	ENSOANG00000015404	-	100	93.567	Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0024061	Prpf18	100	100.000	ENSOCUG00000027756	-	100	94.444	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0024061	Prpf18	100	94.521	ENSORLG00000010293	prpf18	100	82.621	Oryzias_latipes
MGP_SPRETEiJ_G0024061	Prpf18	100	94.521	ENSORLG00020001530	prpf18	100	84.795	Oryzias_latipes_hni
MGP_SPRETEiJ_G0024061	Prpf18	100	94.521	ENSORLG00015013705	prpf18	100	84.503	Oryzias_latipes_hsok
MGP_SPRETEiJ_G0024061	Prpf18	100	94.521	ENSOMEG00000009167	prpf18	100	84.795	Oryzias_melastigma
MGP_SPRETEiJ_G0024061	Prpf18	100	100.000	ENSOGAG00000007294	-	100	97.661	Otolemur_garnettii
MGP_SPRETEiJ_G0024061	Prpf18	100	98.630	ENSOARG00000006243	-	100	95.442	Ovis_aries
MGP_SPRETEiJ_G0024061	Prpf18	100	100.000	ENSPPAG00000041959	-	100	98.830	Pan_paniscus
MGP_SPRETEiJ_G0024061	Prpf18	100	98.630	ENSPPRG00000000107	-	100	97.953	Panthera_pardus
MGP_SPRETEiJ_G0024061	Prpf18	100	98.630	ENSPTIG00000021094	-	100	97.661	Panthera_tigris_altaica
MGP_SPRETEiJ_G0024061	Prpf18	100	100.000	ENSPTRG00000002306	PRPF18	100	98.830	Pan_troglodytes
MGP_SPRETEiJ_G0024061	Prpf18	100	100.000	ENSPANG00000023346	-	100	98.538	Papio_anubis
MGP_SPRETEiJ_G0024061	Prpf18	100	94.521	ENSPKIG00000014128	prpf18	96	82.621	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0024061	Prpf18	100	98.630	ENSPSIG00000016064	-	100	92.398	Pelodiscus_sinensis
MGP_SPRETEiJ_G0024061	Prpf18	100	94.521	ENSPMGG00000016486	prpf18	100	77.485	Periophthalmus_magnuspinnatus
MGP_SPRETEiJ_G0024061	Prpf18	100	100.000	ENSPEMG00000013704	Prpf18	100	99.123	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0024061	Prpf18	97	84.507	ENSPMAG00000000204	prpf18	100	73.988	Petromyzon_marinus
MGP_SPRETEiJ_G0024061	Prpf18	100	98.630	ENSPCIG00000012963	-	99	95.570	Phascolarctos_cinereus
MGP_SPRETEiJ_G0024061	Prpf18	100	94.521	ENSPFOG00000017611	prpf18	100	81.714	Poecilia_formosa
MGP_SPRETEiJ_G0024061	Prpf18	100	94.521	ENSPLAG00000000369	prpf18	100	83.333	Poecilia_latipinna
MGP_SPRETEiJ_G0024061	Prpf18	100	94.521	ENSPMEG00000005183	prpf18	100	83.333	Poecilia_mexicana
MGP_SPRETEiJ_G0024061	Prpf18	100	94.521	ENSPREG00000015232	prpf18	100	82.749	Poecilia_reticulata
MGP_SPRETEiJ_G0024061	Prpf18	100	100.000	ENSPPYG00000002101	PRPF18	100	98.538	Pongo_abelii
MGP_SPRETEiJ_G0024061	Prpf18	100	100.000	ENSPCAG00000010833	-	100	79.825	Procavia_capensis
MGP_SPRETEiJ_G0024061	Prpf18	100	100.000	ENSPCOG00000013057	-	100	92.105	Propithecus_coquereli
MGP_SPRETEiJ_G0024061	Prpf18	100	60.819	ENSPVAG00000002947	-	100	60.819	Pteropus_vampyrus
MGP_SPRETEiJ_G0024061	Prpf18	100	93.151	ENSPNYG00000003554	prpf18	100	84.795	Pundamilia_nyererei
MGP_SPRETEiJ_G0024061	Prpf18	100	95.890	ENSPNAG00000023151	prpf18	100	85.470	Pygocentrus_nattereri
MGP_SPRETEiJ_G0024061	Prpf18	100	98.630	ENSRNOG00000018396	Prpf18	100	98.246	Rattus_norvegicus
MGP_SPRETEiJ_G0024061	Prpf18	100	100.000	ENSRBIG00000028028	-	100	98.246	Rhinopithecus_bieti
MGP_SPRETEiJ_G0024061	Prpf18	100	100.000	ENSRROG00000040695	-	100	98.538	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0024061	Prpf18	100	100.000	ENSSBOG00000034482	-	100	98.246	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0024061	Prpf18	100	98.630	ENSSHAG00000016463	-	100	95.614	Sarcophilus_harrisii
MGP_SPRETEiJ_G0024061	Prpf18	100	77.193	ENSSHAG00000009669	-	100	77.193	Sarcophilus_harrisii
MGP_SPRETEiJ_G0024061	Prpf18	100	93.151	ENSSFOG00015022118	prpf18	100	76.657	Scleropages_formosus
MGP_SPRETEiJ_G0024061	Prpf18	77	44.151	ENSSFOG00015021154	-	89	48.927	Scleropages_formosus
MGP_SPRETEiJ_G0024061	Prpf18	100	93.151	ENSSMAG00000005308	prpf18	100	82.456	Scophthalmus_maximus
MGP_SPRETEiJ_G0024061	Prpf18	100	95.890	ENSSDUG00000015428	prpf18	100	84.795	Seriola_dumerili
MGP_SPRETEiJ_G0024061	Prpf18	100	95.890	ENSSLDG00000023989	prpf18	100	84.795	Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0024061	Prpf18	100	68.129	ENSSARG00000005307	-	100	68.129	Sorex_araneus
MGP_SPRETEiJ_G0024061	Prpf18	100	95.890	ENSSPUG00000002619	-	100	91.520	Sphenodon_punctatus
MGP_SPRETEiJ_G0024061	Prpf18	100	95.890	ENSSPAG00000019502	prpf18	100	84.211	Stegastes_partitus
MGP_SPRETEiJ_G0024061	Prpf18	100	98.630	ENSSSCG00000026354	-	100	98.246	Sus_scrofa
MGP_SPRETEiJ_G0024061	Prpf18	100	97.260	ENSTGUG00000002286	-	100	91.228	Taeniopygia_guttata
MGP_SPRETEiJ_G0024061	Prpf18	100	90.411	ENSTRUG00000011278	prpf18	100	82.164	Takifugu_rubripes
MGP_SPRETEiJ_G0024061	Prpf18	100	93.151	ENSTNIG00000000911	prpf18	100	81.871	Tetraodon_nigroviridis
MGP_SPRETEiJ_G0024061	Prpf18	100	100.000	ENSTBEG00000013011	-	79	100.000	Tupaia_belangeri
MGP_SPRETEiJ_G0024061	Prpf18	100	100.000	ENSTTRG00000011117	PRPF18	100	98.538	Tursiops_truncatus
MGP_SPRETEiJ_G0024061	Prpf18	100	98.630	ENSUAMG00000001815	-	94	95.077	Ursus_americanus
MGP_SPRETEiJ_G0024061	Prpf18	100	97.260	ENSUMAG00000012329	-	100	93.275	Ursus_maritimus
MGP_SPRETEiJ_G0024061	Prpf18	100	98.630	ENSVPAG00000011486	-	100	92.690	Vicugna_pacos
MGP_SPRETEiJ_G0024061	Prpf18	100	98.630	ENSVVUG00000005453	-	100	98.246	Vulpes_vulpes
MGP_SPRETEiJ_G0024061	Prpf18	95	85.507	ENSXETG00000024057	prpf18	100	80.000	Xenopus_tropicalis
MGP_SPRETEiJ_G0024061	Prpf18	100	94.521	ENSXCOG00000020414	prpf18	100	82.558	Xiphophorus_couchianus
MGP_SPRETEiJ_G0024061	Prpf18	100	94.521	ENSXMAG00000004713	prpf18	91	83.041	Xiphophorus_maculatus