EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0024075 (Gene tree)
Gene ID: -
Gene Symbol: Upf2
Alias: -
Full Name: UPF2 regulator of nonsense transcripts homolog (yeast)
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Plus strand
Length: 109088 bases
Position: chr2:3003693-3112780
Accession: 2449307
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0051478	Upf2	PF04050.14	2.5e-32	1	1
MGP_SPRETEiJ_P0051480	Upf2	PF04050.14	1.1e-31	1	1
MGP_SPRETEiJ_P0051478	MIF4G	PF02854.19	3.7e-76	1	3
MGP_SPRETEiJ_P0051478	MIF4G	PF02854.19	3.7e-76	2	3
MGP_SPRETEiJ_P0051478	MIF4G	PF02854.19	3.7e-76	3	3
MGP_SPRETEiJ_P0051480	MIF4G	PF02854.19	3.9e-44	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0051478	-	5174	-	MGP_SPRETEiJ_P0051478	1269 (aa)	-	-
MGP_SPRETEiJ_T0051479	-	1783	-	MGP_SPRETEiJ_P0051479	474 (aa)	-	-
MGP_SPRETEiJ_T0051480	-	2826	-	MGP_SPRETEiJ_P0051480	522 (aa)	-	UPI0000EE069D
MGP_SPRETEiJ_T0051481	-	542	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0024075's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0024075's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0024075	Upf2	100	97.905	ENSG00000151461	UPF2	100	97.170	Homo_sapiens
MGP_SPRETEiJ_G0024075	Upf2	99	80.418	ENSAPOG00000015837	UPF2	100	78.762	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0024075	Upf2	100	97.640	ENSAMEG00000004586	UPF2	100	97.640	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0024075	Upf2	99	83.712	ENSACIG00000018078	UPF2	100	82.565	Amphilophus_citrinellus
MGP_SPRETEiJ_G0024075	Upf2	100	83.396	ENSAOCG00000016766	UPF2	100	82.917	Amphiprion_ocellaris
MGP_SPRETEiJ_G0024075	Upf2	100	83.396	ENSAPEG00000019084	UPF2	100	82.995	Amphiprion_percula
MGP_SPRETEiJ_G0024075	Upf2	100	82.959	ENSATEG00000021677	UPF2	99	82.788	Anabas_testudineus
MGP_SPRETEiJ_G0024075	Upf2	100	89.101	ENSAPLG00000010287	UPF2	100	86.782	Anas_platyrhynchos
MGP_SPRETEiJ_G0024075	Upf2	100	94.476	ENSACAG00000009259	UPF2	100	91.660	Anolis_carolinensis
MGP_SPRETEiJ_G0024075	Upf2	99	97.323	ENSANAG00000028451	UPF2	99	85.602	Aotus_nancymaae
MGP_SPRETEiJ_G0024075	Upf2	100	83.962	ENSACLG00000012696	UPF2	100	82.826	Astatotilapia_calliptera
MGP_SPRETEiJ_G0024075	Upf2	99	84.381	ENSAMXG00000013700	UPF2	99	83.868	Astyanax_mexicanus
MGP_SPRETEiJ_G0024075	Upf2	100	97.714	ENSBTAG00000000288	UPF2	100	97.561	Bos_taurus
MGP_SPRETEiJ_G0024075	Upf2	100	97.524	ENSCJAG00000020685	UPF2	100	97.170	Callithrix_jacchus
MGP_SPRETEiJ_G0024075	Upf2	100	97.797	ENSCAFG00000004839	UPF2	100	97.797	Canis_familiaris
MGP_SPRETEiJ_G0024075	Upf2	99	95.820	ENSCAFG00020005882	UPF2	100	95.820	Canis_lupus_dingo
MGP_SPRETEiJ_G0024075	Upf2	100	97.714	ENSCHIG00000020359	UPF2	100	97.640	Capra_hircus
MGP_SPRETEiJ_G0024075	Upf2	100	97.333	ENSTSYG00000000935	UPF2	100	96.932	Carlito_syrichta
MGP_SPRETEiJ_G0024075	Upf2	99	81.801	ENSCAPG00000016658	UPF2	100	86.029	Cavia_aperea
MGP_SPRETEiJ_G0024075	Upf2	99	96.941	ENSCPOG00000008809	UPF2	100	95.721	Cavia_porcellus
MGP_SPRETEiJ_G0024075	Upf2	100	91.745	ENSCCAG00000035991	UPF2	100	91.745	Cebus_capucinus
MGP_SPRETEiJ_G0024075	Upf2	100	97.905	ENSCATG00000032679	UPF2	100	97.406	Cercocebus_atys
MGP_SPRETEiJ_G0024075	Upf2	100	97.404	ENSCLAG00000011434	UPF2	100	97.404	Chinchilla_lanigera
MGP_SPRETEiJ_G0024075	Upf2	100	97.905	ENSCSAG00000013372	UPF2	100	97.406	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0024075	Upf2	88	99.507	ENSCHOG00000000422	UPF2	89	99.107	Choloepus_hoffmanni
MGP_SPRETEiJ_G0024075	Upf2	99	95.985	ENSCPBG00000027823	UPF2	100	92.908	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0024075	Upf2	99	49.053	ENSCSAVG00000007772	-	99	48.614	Ciona_savignyi
MGP_SPRETEiJ_G0024075	Upf2	99	91.556	ENSCANG00000040396	UPF2	100	91.400	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0024075	Upf2	100	98.976	ENSCGRG00001019347	Upf2	100	98.976	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0024075	Upf2	100	98.976	ENSCGRG00000017993	Upf2	100	98.976	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0024075	Upf2	100	80.340	ENSCSEG00000003520	UPF2	99	78.312	Cynoglossus_semilaevis
MGP_SPRETEiJ_G0024075	Upf2	100	83.051	ENSCVAG00000006167	UPF2	100	82.154	Cyprinodon_variegatus
MGP_SPRETEiJ_G0024075	Upf2	58	79.208	ENSDARG00000111388	CABZ01068469.1	88	81.206	Danio_rerio
MGP_SPRETEiJ_G0024075	Upf2	100	97.482	ENSDNOG00000018160	UPF2	100	97.482	Dasypus_novemcinctus
MGP_SPRETEiJ_G0024075	Upf2	100	97.717	ENSDORG00000002478	Upf2	100	97.717	Dipodomys_ordii
MGP_SPRETEiJ_G0024075	Upf2	72	100.000	ENSETEG00000011583	-	72	100.000	Echinops_telfairi
MGP_SPRETEiJ_G0024075	Upf2	93	77.273	ENSEBUG00000012448	-	87	72.483	Eptatretus_burgeri
MGP_SPRETEiJ_G0024075	Upf2	100	97.905	ENSEASG00005019274	UPF2	100	97.482	Equus_asinus_asinus
MGP_SPRETEiJ_G0024075	Upf2	100	97.905	ENSECAG00000017022	UPF2	100	97.561	Equus_caballus
MGP_SPRETEiJ_G0024075	Upf2	82	91.693	ENSEEUG00000007819	UPF2	82	91.374	Erinaceus_europaeus
MGP_SPRETEiJ_G0024075	Upf2	99	84.030	ENSELUG00000012014	UPF2	100	82.179	Esox_lucius
MGP_SPRETEiJ_G0024075	Upf2	100	98.895	ENSFCAG00000005785	UPF2	100	97.482	Felis_catus
MGP_SPRETEiJ_G0024075	Upf2	100	96.000	ENSFALG00000001889	UPF2	98	93.627	Ficedula_albicollis
MGP_SPRETEiJ_G0024075	Upf2	100	97.328	ENSFDAG00000014348	UPF2	100	97.165	Fukomys_damarensis
MGP_SPRETEiJ_G0024075	Upf2	100	83.774	ENSFHEG00000009826	UPF2	99	82.805	Fundulus_heteroclitus
MGP_SPRETEiJ_G0024075	Upf2	99	83.365	ENSGMOG00000005557	UPF2	100	80.893	Gadus_morhua
MGP_SPRETEiJ_G0024075	Upf2	100	96.190	ENSGALG00000033772	UPF2	100	93.947	Gallus_gallus
MGP_SPRETEiJ_G0024075	Upf2	100	83.396	ENSGAFG00000020867	UPF2	100	81.343	Gambusia_affinis
MGP_SPRETEiJ_G0024075	Upf2	99	83.681	ENSGACG00000001080	UPF2	100	82.486	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0024075	Upf2	100	95.810	ENSGAGG00000002700	UPF2	100	93.470	Gopherus_agassizii
MGP_SPRETEiJ_G0024075	Upf2	100	97.905	ENSGGOG00000001479	UPF2	100	97.170	Gorilla_gorilla
MGP_SPRETEiJ_G0024075	Upf2	100	83.585	ENSHBUG00000004249	UPF2	100	82.799	Haplochromis_burtoni
MGP_SPRETEiJ_G0024075	Upf2	99	88.550	ENSHGLG00000003822	-	99	84.161	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0024075	Upf2	100	97.168	ENSHGLG00000015176	-	100	97.168	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0024075	Upf2	99	96.552	ENSHGLG00100010036	UPF2	100	93.612	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0024075	Upf2	100	83.208	ENSHCOG00000004025	UPF2	99	80.730	Hippocampus_comes
MGP_SPRETEiJ_G0024075	Upf2	100	82.987	ENSIPUG00000015524	UPF2	100	83.125	Ictalurus_punctatus
MGP_SPRETEiJ_G0024075	Upf2	100	97.874	ENSSTOG00000013075	UPF2	100	97.874	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0024075	Upf2	100	97.087	ENSJJAG00000004913	Upf2	100	97.087	Jaculus_jaculus
MGP_SPRETEiJ_G0024075	Upf2	100	82.804	ENSKMAG00000001071	UPF2	99	82.884	Kryptolebias_marmoratus
MGP_SPRETEiJ_G0024075	Upf2	100	83.895	ENSLBEG00000016394	-	99	82.944	Labrus_bergylta
MGP_SPRETEiJ_G0024075	Upf2	80	82.793	ENSLBEG00000000728	-	93	82.793	Labrus_bergylta
MGP_SPRETEiJ_G0024075	Upf2	99	79.718	ENSLACG00000015945	UPF2	100	79.843	Latimeria_chalumnae
MGP_SPRETEiJ_G0024075	Upf2	100	86.981	ENSLOCG00000015698	UPF2	100	86.446	Lepisosteus_oculatus
MGP_SPRETEiJ_G0024075	Upf2	100	97.905	ENSMFAG00000043865	UPF2	100	97.327	Macaca_fascicularis
MGP_SPRETEiJ_G0024075	Upf2	100	97.905	ENSMMUG00000008241	UPF2	100	97.327	Macaca_mulatta
MGP_SPRETEiJ_G0024075	Upf2	81	97.073	ENSMNEG00000008062	UPF2	100	97.073	Macaca_nemestrina
MGP_SPRETEiJ_G0024075	Upf2	99	94.601	ENSMLEG00000036120	UPF2	100	98.068	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0024075	Upf2	100	83.146	ENSMAMG00000018276	UPF2	100	82.710	Mastacembelus_armatus
MGP_SPRETEiJ_G0024075	Upf2	100	83.962	ENSMZEG00005021595	UPF2	100	82.826	Maylandia_zebra
MGP_SPRETEiJ_G0024075	Upf2	99	95.992	ENSMGAG00000004573	UPF2	99	93.307	Meleagris_gallopavo
MGP_SPRETEiJ_G0024075	Upf2	100	98.855	ENSMAUG00000016512	Upf2	100	96.612	Mesocricetus_auratus
MGP_SPRETEiJ_G0024075	Upf2	95	98.469	ENSMICG00000001716	UPF2	99	98.469	Microcebus_murinus
MGP_SPRETEiJ_G0024075	Upf2	100	98.855	ENSMOCG00000008263	Upf2	100	98.503	Microtus_ochrogaster
MGP_SPRETEiJ_G0024075	Upf2	99	80.610	ENSMMOG00000006528	UPF2	100	80.549	Mola_mola
MGP_SPRETEiJ_G0024075	Upf2	100	95.673	ENSMODG00000016794	UPF2	100	95.673	Monodelphis_domestica
MGP_SPRETEiJ_G0024075	Upf2	99	82.408	ENSMALG00000002663	UPF2	100	82.694	Monopterus_albus
MGP_SPRETEiJ_G0024075	Upf2	100	99.133	MGP_CAROLIEiJ_G0023157	Upf2	100	99.133	Mus_caroli
MGP_SPRETEiJ_G0024075	Upf2	100	100.000	ENSMUSG00000043241	Upf2	100	99.764	Mus_musculus
MGP_SPRETEiJ_G0024075	Upf2	100	99.617	MGP_PahariEiJ_G0019217	Upf2	100	99.617	Mus_pahari
MGP_SPRETEiJ_G0024075	Upf2	100	97.905	ENSMPUG00000001064	UPF2	100	97.640	Mustela_putorius_furo
MGP_SPRETEiJ_G0024075	Upf2	99	97.897	ENSMLUG00000000228	UPF2	100	97.251	Myotis_lucifugus
MGP_SPRETEiJ_G0024075	Upf2	100	83.962	ENSNBRG00000013629	UPF2	100	82.826	Neolamprologus_brichardi
MGP_SPRETEiJ_G0024075	Upf2	100	97.714	ENSNLEG00000012058	UPF2	100	97.327	Nomascus_leucogenys
MGP_SPRETEiJ_G0024075	Upf2	61	97.126	ENSMEUG00000002180	-	60	97.409	Notamacropus_eugenii
MGP_SPRETEiJ_G0024075	Upf2	84	99.187	ENSOPRG00000006801	-	82	99.296	Ochotona_princeps
MGP_SPRETEiJ_G0024075	Upf2	100	97.168	ENSODEG00000001290	UPF2	100	97.168	Octodon_degus
MGP_SPRETEiJ_G0024075	Upf2	100	84.151	ENSONIG00000017991	UPF2	100	82.904	Oreochromis_niloticus
MGP_SPRETEiJ_G0024075	Upf2	60	95.820	ENSOANG00000019744	-	93	96.809	Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0024075	Upf2	99	96.941	ENSOCUG00000006230	UPF2	100	96.787	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0024075	Upf2	100	82.772	ENSORLG00000017189	UPF2	100	82.123	Oryzias_latipes
MGP_SPRETEiJ_G0024075	Upf2	100	82.959	ENSORLG00020005969	UPF2	100	82.123	Oryzias_latipes_hni
MGP_SPRETEiJ_G0024075	Upf2	100	82.959	ENSORLG00015005713	UPF2	100	82.123	Oryzias_latipes_hsok
MGP_SPRETEiJ_G0024075	Upf2	99	78.003	ENSOMEG00000023420	UPF2	98	79.437	Oryzias_melastigma
MGP_SPRETEiJ_G0024075	Upf2	100	97.954	ENSOGAG00000005796	UPF2	100	97.954	Otolemur_garnettii
MGP_SPRETEiJ_G0024075	Upf2	100	97.486	ENSOARG00000014587	UPF2	100	97.486	Ovis_aries
MGP_SPRETEiJ_G0024075	Upf2	99	93.740	ENSPPAG00000037953	UPF2	100	94.484	Pan_paniscus
MGP_SPRETEiJ_G0024075	Upf2	100	97.482	ENSPPRG00000000690	UPF2	100	97.482	Panthera_pardus
MGP_SPRETEiJ_G0024075	Upf2	100	97.482	ENSPTIG00000008867	UPF2	100	97.482	Panthera_tigris_altaica
MGP_SPRETEiJ_G0024075	Upf2	100	97.905	ENSPTRG00000002291	UPF2	100	97.170	Pan_troglodytes
MGP_SPRETEiJ_G0024075	Upf2	100	97.905	ENSPANG00000023399	UPF2	100	97.327	Papio_anubis
MGP_SPRETEiJ_G0024075	Upf2	100	82.453	ENSPKIG00000025502	UPF2	100	82.358	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0024075	Upf2	59	92.430	ENSPSIG00000015158	UPF2	95	92.430	Pelodiscus_sinensis
MGP_SPRETEiJ_G0024075	Upf2	99	82.163	ENSPMGG00000005259	UPF2	100	80.425	Periophthalmus_magnuspinnatus
MGP_SPRETEiJ_G0024075	Upf2	93	97.959	ENSPEMG00000015731	Upf2	99	97.959	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0024075	Upf2	100	95.358	ENSPCIG00000006656	UPF2	100	95.358	Phascolarctos_cinereus
MGP_SPRETEiJ_G0024075	Upf2	100	83.585	ENSPFOG00000017118	UPF2	100	81.811	Poecilia_formosa
MGP_SPRETEiJ_G0024075	Upf2	100	83.585	ENSPLAG00000005094	UPF2	100	81.811	Poecilia_latipinna
MGP_SPRETEiJ_G0024075	Upf2	100	83.585	ENSPMEG00000017009	UPF2	100	81.811	Poecilia_mexicana
MGP_SPRETEiJ_G0024075	Upf2	99	82.857	ENSPREG00000021880	UPF2	100	82.081	Poecilia_reticulata
MGP_SPRETEiJ_G0024075	Upf2	100	97.714	ENSPPYG00000002089	-	100	98.086	Pongo_abelii
MGP_SPRETEiJ_G0024075	Upf2	92	94.191	ENSPCAG00000000684	UPF2	100	83.006	Procavia_capensis
MGP_SPRETEiJ_G0024075	Upf2	99	94.953	ENSPCOG00000021656	UPF2	100	95.110	Propithecus_coquereli
MGP_SPRETEiJ_G0024075	Upf2	100	97.524	ENSPVAG00000017286	UPF2	100	89.858	Pteropus_vampyrus
MGP_SPRETEiJ_G0024075	Upf2	99	83.902	ENSPNYG00000017096	UPF2	100	80.375	Pundamilia_nyererei
MGP_SPRETEiJ_G0024075	Upf2	100	84.231	ENSPNAG00000009357	UPF2	100	84.465	Pygocentrus_nattereri
MGP_SPRETEiJ_G0024075	Upf2	99	92.925	ENSRNOG00000023593	Upf2	100	100.000	Rattus_norvegicus
MGP_SPRETEiJ_G0024075	Upf2	99	98.084	ENSRBIG00000037780	UPF2	100	96.530	Rhinopithecus_bieti
MGP_SPRETEiJ_G0024075	Upf2	100	98.092	ENSRROG00000043547	UPF2	100	97.404	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0024075	Upf2	100	97.901	ENSSBOG00000020012	UPF2	100	97.168	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0024075	Upf2	100	83.585	ENSSFOG00015023788	upf2	100	82.802	Scleropages_formosus
MGP_SPRETEiJ_G0024075	Upf2	100	84.053	ENSSMAG00000007637	UPF2	100	80.543	Scophthalmus_maximus
MGP_SPRETEiJ_G0024075	Upf2	100	83.774	ENSSDUG00000017244	UPF2	99	83.151	Seriola_dumerili
MGP_SPRETEiJ_G0024075	Upf2	99	81.647	ENSSLDG00000016866	UPF2	82	84.562	Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0024075	Upf2	100	96.190	ENSSARG00000008615	UPF2	100	94.807	Sorex_araneus
MGP_SPRETEiJ_G0024075	Upf2	99	92.366	ENSSPUG00000014544	UPF2	99	89.921	Sphenodon_punctatus
MGP_SPRETEiJ_G0024075	Upf2	100	97.714	ENSSSCG00000011117	-	100	97.929	Sus_scrofa
MGP_SPRETEiJ_G0024075	Upf2	75	95.663	ENSTGUG00000015714	-	100	96.173	Taeniopygia_guttata
MGP_SPRETEiJ_G0024075	Upf2	99	96.360	ENSTGUG00000002163	-	100	93.533	Taeniopygia_guttata
MGP_SPRETEiJ_G0024075	Upf2	100	83.146	ENSTRUG00000007519	UPF2	99	82.293	Takifugu_rubripes
MGP_SPRETEiJ_G0024075	Upf2	100	81.903	ENSTNIG00000004453	UPF2	100	79.517	Tetraodon_nigroviridis
MGP_SPRETEiJ_G0024075	Upf2	93	90.585	ENSTBEG00000012679	UPF2	93	90.585	Tupaia_belangeri
MGP_SPRETEiJ_G0024075	Upf2	100	97.905	ENSTTRG00000016388	UPF2	100	97.404	Tursiops_truncatus
MGP_SPRETEiJ_G0024075	Upf2	95	99.306	ENSUAMG00000023560	UPF2	100	97.824	Ursus_americanus
MGP_SPRETEiJ_G0024075	Upf2	100	97.714	ENSUMAG00000012953	UPF2	95	97.640	Ursus_maritimus
MGP_SPRETEiJ_G0024075	Upf2	85	96.774	ENSVPAG00000006763	UPF2	85	96.774	Vicugna_pacos
MGP_SPRETEiJ_G0024075	Upf2	100	97.718	ENSVVUG00000006166	UPF2	100	97.718	Vulpes_vulpes
MGP_SPRETEiJ_G0024075	Upf2	100	87.713	ENSXETG00000033103	UPF2	91	89.187	Xenopus_tropicalis
MGP_SPRETEiJ_G0024075	Upf2	99	83.144	ENSXCOG00000011604	UPF2	100	81.470	Xiphophorus_couchianus
MGP_SPRETEiJ_G0024075	Upf2	100	83.208	ENSXMAG00000017209	UPF2	100	81.499	Xiphophorus_maculatus