EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0024331 (Gene tree)
Gene ID: -
Gene Symbol: Prdm12
Alias: LOC381359
Full Name: PR domain containing 12
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Plus strand
Length: 15605 bases
Position: chr2:29807500-29823104
Accession: 2685844
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0053019	zf-C2H2	PF00096.26	1.6e-12	1	2
MGP_SPRETEiJ_P0053019	zf-C2H2	PF00096.26	1.6e-12	2	2
MGP_SPRETEiJ_P0053019	zf-met	PF12874.7	1.4e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0053019	-	2485	-	MGP_SPRETEiJ_P0053019	365 (aa)	-	UPI00001E3096

Gene Model

Click here to download MGP_SPRETEiJ_G0024331's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0024331's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_SPRETEiJ_G0024331	Prdm12	68	47.273	MGP_SPRETEiJ_G0029467	Prdm5	94	47.273

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0024331	Prdm12	100	98.093	ENSG00000130711	PRDM12	100	98.093	Homo_sapiens
MGP_SPRETEiJ_G0024331	Prdm12	99	63.061	ENSAPOG00000018234	-	93	66.860	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0024331	Prdm12	99	75.065	ENSAPOG00000016051	prdm12b	92	79.096	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0024331	Prdm12	88	94.427	ENSAMEG00000016234	PRDM12	99	94.427	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0024331	Prdm12	99	74.737	ENSACIG00000019578	prdm12b	93	79.943	Amphilophus_citrinellus
MGP_SPRETEiJ_G0024331	Prdm12	99	75.907	ENSACIG00000005193	-	91	80.290	Amphilophus_citrinellus
MGP_SPRETEiJ_G0024331	Prdm12	99	76.115	ENSAOCG00000015040	prdm12b	92	80.571	Amphiprion_ocellaris
MGP_SPRETEiJ_G0024331	Prdm12	100	72.656	ENSAPEG00000022849	-	89	78.363	Amphiprion_percula
MGP_SPRETEiJ_G0024331	Prdm12	99	76.720	ENSAPEG00000015092	prdm12b	92	81.268	Amphiprion_percula
MGP_SPRETEiJ_G0024331	Prdm12	99	75.325	ENSATEG00000014595	-	96	82.371	Anabas_testudineus
MGP_SPRETEiJ_G0024331	Prdm12	93	98.235	ENSANAG00000020616	PRDM12	100	98.235	Aotus_nancymaae
MGP_SPRETEiJ_G0024331	Prdm12	99	74.112	ENSACLG00000007631	-	87	81.871	Astatotilapia_calliptera
MGP_SPRETEiJ_G0024331	Prdm12	99	77.929	ENSACLG00000011876	prdm12b	92	82.143	Astatotilapia_calliptera
MGP_SPRETEiJ_G0024331	Prdm12	99	82.973	ENSAMXG00000033665	prdm12b	90	88.323	Astyanax_mexicanus
MGP_SPRETEiJ_G0024331	Prdm12	99	78.571	ENSAMXG00000008540	PRDM12	90	84.356	Astyanax_mexicanus
MGP_SPRETEiJ_G0024331	Prdm12	100	98.082	ENSBTAG00000023797	PRDM12	100	98.082	Bos_taurus
MGP_SPRETEiJ_G0024331	Prdm12	100	96.986	ENSCJAG00000020540	PRDM12	100	96.986	Callithrix_jacchus
MGP_SPRETEiJ_G0024331	Prdm12	88	97.516	ENSCAFG00000023076	PRDM12	99	97.516	Canis_familiaris
MGP_SPRETEiJ_G0024331	Prdm12	100	98.630	ENSCAFG00020024046	PRDM12	100	98.630	Canis_lupus_dingo
MGP_SPRETEiJ_G0024331	Prdm12	100	98.082	ENSCHIG00000025005	PRDM12	100	98.082	Capra_hircus
MGP_SPRETEiJ_G0024331	Prdm12	93	92.647	ENSCPOG00000005901	PRDM12	95	98.403	Cavia_porcellus
MGP_SPRETEiJ_G0024331	Prdm12	100	97.808	ENSCCAG00000037485	PRDM12	100	97.808	Cebus_capucinus
MGP_SPRETEiJ_G0024331	Prdm12	100	97.808	ENSCATG00000020327	PRDM12	100	97.808	Cercocebus_atys
MGP_SPRETEiJ_G0024331	Prdm12	100	91.233	ENSCLAG00000005499	PRDM12	92	97.904	Chinchilla_lanigera
MGP_SPRETEiJ_G0024331	Prdm12	100	98.082	ENSCSAG00000014756	PRDM12	100	98.082	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0024331	Prdm12	100	88.493	ENSCPBG00000022628	PRDM12	94	92.515	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0024331	Prdm12	100	99.454	ENSCGRG00001015005	Prdm12	100	99.454	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0024331	Prdm12	99	72.821	ENSCVAG00000000944	-	90	77.778	Cyprinodon_variegatus
MGP_SPRETEiJ_G0024331	Prdm12	99	77.273	ENSCVAG00000017166	prdm12b	92	82.405	Cyprinodon_variegatus
MGP_SPRETEiJ_G0024331	Prdm12	99	82.038	ENSDARG00000007430	prdm12b	93	86.257	Danio_rerio
MGP_SPRETEiJ_G0024331	Prdm12	99	97.534	ENSDNOG00000042302	PRDM12	99	97.534	Dasypus_novemcinctus
MGP_SPRETEiJ_G0024331	Prdm12	88	62.393	ENSEBUG00000016780	prdm12b	78	63.818	Eptatretus_burgeri
MGP_SPRETEiJ_G0024331	Prdm12	100	97.534	ENSEASG00005008472	PRDM12	100	97.534	Equus_asinus_asinus
MGP_SPRETEiJ_G0024331	Prdm12	100	97.808	ENSECAG00000005933	PRDM12	100	97.808	Equus_caballus
MGP_SPRETEiJ_G0024331	Prdm12	99	80.423	ENSELUG00000009905	prdm12b	91	86.310	Esox_lucius
MGP_SPRETEiJ_G0024331	Prdm12	99	76.648	ENSELUG00000013674	PRDM12	90	82.875	Esox_lucius
MGP_SPRETEiJ_G0024331	Prdm12	100	98.356	ENSFCAG00000043086	PRDM12	100	98.356	Felis_catus
MGP_SPRETEiJ_G0024331	Prdm12	100	88.767	ENSFALG00000001445	PRDM12	84	92.814	Ficedula_albicollis
MGP_SPRETEiJ_G0024331	Prdm12	99	73.846	ENSFHEG00000007746	-	89	79.592	Fundulus_heteroclitus
MGP_SPRETEiJ_G0024331	Prdm12	99	76.393	ENSFHEG00000003944	prdm12b	92	81.395	Fundulus_heteroclitus
MGP_SPRETEiJ_G0024331	Prdm12	91	81.982	ENSGMOG00000011797	prdm12b	94	81.982	Gadus_morhua
MGP_SPRETEiJ_G0024331	Prdm12	100	88.767	ENSGALG00000003895	PRDM12	94	92.814	Gallus_gallus
MGP_SPRETEiJ_G0024331	Prdm12	100	78.400	ENSGAFG00000010827	prdm12b	90	82.301	Gambusia_affinis
MGP_SPRETEiJ_G0024331	Prdm12	100	78.191	ENSGACG00000016713	prdm12b	91	83.728	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0024331	Prdm12	100	88.767	ENSGAGG00000014083	PRDM12	94	92.814	Gopherus_agassizii
MGP_SPRETEiJ_G0024331	Prdm12	100	98.087	ENSGGOG00000010568	PRDM12	100	98.087	Gorilla_gorilla
MGP_SPRETEiJ_G0024331	Prdm12	99	76.455	ENSHBUG00000022878	prdm12b	93	80.403	Haplochromis_burtoni
MGP_SPRETEiJ_G0024331	Prdm12	99	74.112	ENSHBUG00000022537	-	80	81.871	Haplochromis_burtoni
MGP_SPRETEiJ_G0024331	Prdm12	100	97.260	ENSHGLG00000013939	PRDM12	100	97.260	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0024331	Prdm12	89	80.994	ENSHCOG00000003663	prdm12b	89	79.370	Hippocampus_comes
MGP_SPRETEiJ_G0024331	Prdm12	99	73.046	ENSHCOG00000021167	-	95	76.471	Hippocampus_comes
MGP_SPRETEiJ_G0024331	Prdm12	99	75.543	ENSIPUG00000019544	PRDM12	90	82.012	Ictalurus_punctatus
MGP_SPRETEiJ_G0024331	Prdm12	99	81.551	ENSIPUG00000017053	prdm12b	90	87.651	Ictalurus_punctatus
MGP_SPRETEiJ_G0024331	Prdm12	99	94.751	ENSSTOG00000005986	PRDM12	87	99.401	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0024331	Prdm12	90	99.091	ENSJJAG00000005424	Prdm12	100	99.091	Jaculus_jaculus
MGP_SPRETEiJ_G0024331	Prdm12	89	78.470	ENSKMAG00000016921	prdm12b	87	78.754	Kryptolebias_marmoratus
MGP_SPRETEiJ_G0024331	Prdm12	99	75.477	ENSKMAG00000021205	-	92	81.651	Kryptolebias_marmoratus
MGP_SPRETEiJ_G0024331	Prdm12	99	74.870	ENSLBEG00000007776	-	89	81.602	Labrus_bergylta
MGP_SPRETEiJ_G0024331	Prdm12	99	76.984	ENSLBEG00000017769	prdm12b	88	84.132	Labrus_bergylta
MGP_SPRETEiJ_G0024331	Prdm12	99	86.264	ENSLACG00000017560	PRDM12	94	90.090	Latimeria_chalumnae
MGP_SPRETEiJ_G0024331	Prdm12	99	81.622	ENSLOCG00000005429	prdm12b	93	86.726	Lepisosteus_oculatus
MGP_SPRETEiJ_G0024331	Prdm12	92	97.059	ENSLAFG00000006979	PRDM12	91	97.059	Loxodonta_africana
MGP_SPRETEiJ_G0024331	Prdm12	100	93.188	ENSMFAG00000040322	PRDM12	91	98.204	Macaca_fascicularis
MGP_SPRETEiJ_G0024331	Prdm12	100	97.808	ENSMNEG00000037234	PRDM12	100	97.808	Macaca_nemestrina
MGP_SPRETEiJ_G0024331	Prdm12	99	75.781	ENSMAMG00000013212	prdm12b	90	83.383	Mastacembelus_armatus
MGP_SPRETEiJ_G0024331	Prdm12	89	81.250	ENSMAMG00000018988	-	86	81.548	Mastacembelus_armatus
MGP_SPRETEiJ_G0024331	Prdm12	99	73.737	ENSMZEG00005000415	PRDM12	86	81.871	Maylandia_zebra
MGP_SPRETEiJ_G0024331	Prdm12	93	92.669	ENSMGAG00000005438	PRDM12	94	92.814	Meleagris_gallopavo
MGP_SPRETEiJ_G0024331	Prdm12	100	97.808	ENSMAUG00000013040	Prdm12	100	97.808	Mesocricetus_auratus
MGP_SPRETEiJ_G0024331	Prdm12	100	96.986	ENSMICG00000015480	PRDM12	100	96.986	Microcebus_murinus
MGP_SPRETEiJ_G0024331	Prdm12	98	96.348	ENSMOCG00000021026	Prdm12	93	99.415	Microtus_ochrogaster
MGP_SPRETEiJ_G0024331	Prdm12	100	90.685	ENSMODG00000012108	PRDM12	94	94.910	Monodelphis_domestica
MGP_SPRETEiJ_G0024331	Prdm12	99	66.133	ENSMALG00000021901	prdm12b	88	71.171	Monopterus_albus
MGP_SPRETEiJ_G0024331	Prdm12	100	100.000	MGP_CAROLIEiJ_G0023414	Prdm12	100	100.000	Mus_caroli
MGP_SPRETEiJ_G0024331	Prdm12	100	100.000	ENSMUSG00000079466	Prdm12	100	100.000	Mus_musculus
MGP_SPRETEiJ_G0024331	Prdm12	100	100.000	MGP_PahariEiJ_G0024871	Prdm12	100	100.000	Mus_pahari
MGP_SPRETEiJ_G0024331	Prdm12	100	95.068	ENSNGAG00000018480	Prdm12	100	95.068	Nannospalax_galili
MGP_SPRETEiJ_G0024331	Prdm12	99	72.267	ENSNBRG00000024312	-	95	76.608	Neolamprologus_brichardi
MGP_SPRETEiJ_G0024331	Prdm12	99	75.328	ENSNBRG00000006727	prdm12b	93	79.714	Neolamprologus_brichardi
MGP_SPRETEiJ_G0024331	Prdm12	100	80.548	ENSMEUG00000003828	PRDM12	94	83.832	Notamacropus_eugenii
MGP_SPRETEiJ_G0024331	Prdm12	90	97.576	ENSOPRG00000008680	PRDM12	100	97.576	Ochotona_princeps
MGP_SPRETEiJ_G0024331	Prdm12	94	98.251	ENSODEG00000016282	PRDM12	64	98.251	Octodon_degus
MGP_SPRETEiJ_G0024331	Prdm12	62	88.596	ENSOANG00000001043	PRDM12	91	95.939	Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0024331	Prdm12	86	92.971	ENSOCUG00000008241	PRDM12	98	94.098	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0024331	Prdm12	100	76.240	ENSORLG00000007114	prdm12b	92	81.556	Oryzias_latipes
MGP_SPRETEiJ_G0024331	Prdm12	99	72.821	ENSORLG00000017558	-	87	80.352	Oryzias_latipes
MGP_SPRETEiJ_G0024331	Prdm12	100	75.654	ENSORLG00020019565	prdm12b	91	81.268	Oryzias_latipes_hni
MGP_SPRETEiJ_G0024331	Prdm12	99	72.634	ENSORLG00020013167	-	87	80.117	Oryzias_latipes_hni
MGP_SPRETEiJ_G0024331	Prdm12	99	72.821	ENSORLG00015003435	-	87	80.352	Oryzias_latipes_hsok
MGP_SPRETEiJ_G0024331	Prdm12	100	75.654	ENSORLG00015007621	prdm12b	92	81.322	Oryzias_latipes_hsok
MGP_SPRETEiJ_G0024331	Prdm12	99	73.643	ENSOMEG00000007762	-	94	78.632	Oryzias_melastigma
MGP_SPRETEiJ_G0024331	Prdm12	100	75.584	ENSOMEG00000004134	prdm12b	91	80.571	Oryzias_melastigma
MGP_SPRETEiJ_G0024331	Prdm12	91	98.799	ENSOGAG00000007557	PRDM12	100	98.799	Otolemur_garnettii
MGP_SPRETEiJ_G0024331	Prdm12	79	97.561	ENSPPAG00000031506	-	99	95.904	Pan_paniscus
MGP_SPRETEiJ_G0024331	Prdm12	100	86.066	ENSPPRG00000023024	PRDM12	86	89.851	Panthera_pardus
MGP_SPRETEiJ_G0024331	Prdm12	100	98.361	ENSPTRG00000021475	PRDM12	100	98.361	Pan_troglodytes
MGP_SPRETEiJ_G0024331	Prdm12	100	98.361	ENSPTRG00000043324	-	100	98.361	Pan_troglodytes
MGP_SPRETEiJ_G0024331	Prdm12	100	97.808	ENSPANG00000025967	PRDM12	100	97.808	Papio_anubis
MGP_SPRETEiJ_G0024331	Prdm12	99	80.475	ENSPKIG00000007228	prdm12b	94	85.057	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0024331	Prdm12	93	78.632	ENSPKIG00000004305	PRDM12	94	80.539	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0024331	Prdm12	100	88.493	ENSPSIG00000006739	PRDM12	94	92.515	Pelodiscus_sinensis
MGP_SPRETEiJ_G0024331	Prdm12	99	72.846	ENSPMGG00000002356	-	88	80.655	Periophthalmus_magnuspinnatus
MGP_SPRETEiJ_G0024331	Prdm12	100	76.903	ENSPMGG00000008867	prdm12b	92	82.799	Periophthalmus_magnuspinnatus
MGP_SPRETEiJ_G0024331	Prdm12	95	96.542	ENSPEMG00000009969	Prdm12	91	99.699	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0024331	Prdm12	100	90.959	ENSPCIG00000024119	PRDM12	94	95.210	Phascolarctos_cinereus
MGP_SPRETEiJ_G0024331	Prdm12	99	77.926	ENSPFOG00000019841	prdm12b	93	81.924	Poecilia_formosa
MGP_SPRETEiJ_G0024331	Prdm12	90	83.036	ENSPLAG00000016626	prdm12b	90	82.596	Poecilia_latipinna
MGP_SPRETEiJ_G0024331	Prdm12	97	76.630	ENSPMEG00000016698	prdm12b	89	82.067	Poecilia_mexicana
MGP_SPRETEiJ_G0024331	Prdm12	96	73.278	ENSPREG00000003211	-	90	77.982	Poecilia_reticulata
MGP_SPRETEiJ_G0024331	Prdm12	100	76.963	ENSPREG00000015073	prdm12b	89	82.456	Poecilia_reticulata
MGP_SPRETEiJ_G0024331	Prdm12	96	96.011	ENSPPYG00000019694	PRDM12	95	97.605	Pongo_abelii
MGP_SPRETEiJ_G0024331	Prdm12	100	98.361	ENSPCOG00000022255	PRDM12	100	98.361	Propithecus_coquereli
MGP_SPRETEiJ_G0024331	Prdm12	100	97.541	ENSPVAG00000001511	PRDM12	100	97.541	Pteropus_vampyrus
MGP_SPRETEiJ_G0024331	Prdm12	99	75.789	ENSPNYG00000009607	prdm12b	93	79.656	Pundamilia_nyererei
MGP_SPRETEiJ_G0024331	Prdm12	99	73.737	ENSPNYG00000013589	-	86	81.871	Pundamilia_nyererei
MGP_SPRETEiJ_G0024331	Prdm12	99	75.000	ENSPNAG00000013396	PRDM12	88	80.547	Pygocentrus_nattereri
MGP_SPRETEiJ_G0024331	Prdm12	99	82.306	ENSPNAG00000024532	prdm12b	91	88.623	Pygocentrus_nattereri
MGP_SPRETEiJ_G0024331	Prdm12	100	100.000	ENSRNOG00000009218	Prdm12	100	100.000	Rattus_norvegicus
MGP_SPRETEiJ_G0024331	Prdm12	87	98.423	ENSRBIG00000042712	PRDM12	88	97.508	Rhinopithecus_bieti
MGP_SPRETEiJ_G0024331	Prdm12	88	98.442	ENSRROG00000043554	PRDM12	100	98.442	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0024331	Prdm12	100	90.710	ENSSHAG00000015972	PRDM12	94	94.925	Sarcophilus_harrisii
MGP_SPRETEiJ_G0024331	Prdm12	99	74.293	ENSSMAG00000003754	prdm12b	90	80.627	Scophthalmus_maximus
MGP_SPRETEiJ_G0024331	Prdm12	99	75.258	ENSSDUG00000023498	prdm12b	90	81.214	Seriola_dumerili
MGP_SPRETEiJ_G0024331	Prdm12	93	81.395	ENSSDUG00000019071	-	92	82.883	Seriola_dumerili
MGP_SPRETEiJ_G0024331	Prdm12	99	75.844	ENSSLDG00000009557	prdm12b	90	82.216	Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0024331	Prdm12	99	77.596	ENSSLDG00000013562	-	93	84.356	Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0024331	Prdm12	100	88.493	ENSSPUG00000013424	PRDM12	94	92.515	Sphenodon_punctatus
MGP_SPRETEiJ_G0024331	Prdm12	99	66.321	ENSSPAG00000022420	-	87	74.769	Stegastes_partitus
MGP_SPRETEiJ_G0024331	Prdm12	99	75.916	ENSSPAG00000018824	prdm12b	90	81.871	Stegastes_partitus
MGP_SPRETEiJ_G0024331	Prdm12	100	98.630	ENSSSCG00000005703	PRDM12	100	98.630	Sus_scrofa
MGP_SPRETEiJ_G0024331	Prdm12	99	75.000	ENSTRUG00000013239	-	93	81.325	Takifugu_rubripes
MGP_SPRETEiJ_G0024331	Prdm12	99	77.045	ENSTRUG00000018659	prdm12b	92	82.405	Takifugu_rubripes
MGP_SPRETEiJ_G0024331	Prdm12	99	75.610	ENSTNIG00000005859	-	92	81.155	Tetraodon_nigroviridis
MGP_SPRETEiJ_G0024331	Prdm12	99	77.368	ENSTNIG00000009020	prdm12b	89	84.685	Tetraodon_nigroviridis
MGP_SPRETEiJ_G0024331	Prdm12	96	97.994	ENSUAMG00000009653	PRDM12	97	97.994	Ursus_americanus
MGP_SPRETEiJ_G0024331	Prdm12	91	98.795	ENSVVUG00000027662	PRDM12	79	98.795	Vulpes_vulpes
MGP_SPRETEiJ_G0024331	Prdm12	100	77.748	ENSXCOG00000002836	prdm12b	91	82.596	Xiphophorus_couchianus
MGP_SPRETEiJ_G0024331	Prdm12	89	83.234	ENSXMAG00000005537	prdm12b	91	82.111	Xiphophorus_maculatus
MGP_SPRETEiJ_G0024331	Prdm12	99	74.479	ENSXMAG00000028012	-	88	80.294	Xiphophorus_maculatus