EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0024476 (Gene tree)
Gene ID: -
Gene Symbol: Rif1
Alias: 5730435J01Rik|6530403D07Rik|D2Ertd145e
Full Name: replication timing regulatory factor 1
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Plus strand
Length: 53234 bases
Position: chr2:50951631-51004864
Accession: 1098622
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0053799	Rif1_N	PF12231.8	2.9e-73	1	1
MGP_SPRETEiJ_P0053800	Rif1_N	PF12231.8	2.9e-73	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0053805	-	833	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0053808	-	2780	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0053801	-	7282	-	MGP_SPRETEiJ_P0053801	2415 (aa)	-	-
MGP_SPRETEiJ_T0053800	-	8484	-	MGP_SPRETEiJ_P0053800	2422 (aa)	-	-
MGP_SPRETEiJ_T0053803	-	3888	-	MGP_SPRETEiJ_P0053803	1269 (aa)	-	-
MGP_SPRETEiJ_T0053802	-	307	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0053799	-	8489	-	MGP_SPRETEiJ_P0053799	2422 (aa)	-	-
MGP_SPRETEiJ_T0053804	-	2813	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0053807	-	3852	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0053806	-	3596	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0024476's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0024476's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0024476	Rif1	100	69.621	ENSG00000080345	RIF1	97	85.158	Homo_sapiens
MGP_SPRETEiJ_G0024476	Rif1	54	47.698	ENSAPOG00000011073	rif1	52	47.432	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0024476	Rif1	100	69.927	ENSAMEG00000008461	RIF1	100	69.805	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0024476	Rif1	68	49.696	ENSACIG00000017765	rif1	73	49.391	Amphilophus_citrinellus
MGP_SPRETEiJ_G0024476	Rif1	67	47.464	ENSAOCG00000017231	rif1	66	47.273	Amphiprion_ocellaris
MGP_SPRETEiJ_G0024476	Rif1	64	56.338	ENSAPEG00000013228	rif1	65	53.910	Amphiprion_percula
MGP_SPRETEiJ_G0024476	Rif1	72	44.859	ENSATEG00000022887	rif1	67	47.340	Anabas_testudineus
MGP_SPRETEiJ_G0024476	Rif1	88	65.217	ENSAPLG00000007092	RIF1	96	65.217	Anas_platyrhynchos
MGP_SPRETEiJ_G0024476	Rif1	85	57.784	ENSACAG00000003714	RIF1	90	57.784	Anolis_carolinensis
MGP_SPRETEiJ_G0024476	Rif1	100	69.153	ENSANAG00000024840	RIF1	99	69.153	Aotus_nancymaae
MGP_SPRETEiJ_G0024476	Rif1	51	51.546	ENSAMXG00000010910	rif1	52	51.368	Astyanax_mexicanus
MGP_SPRETEiJ_G0024476	Rif1	94	68.890	ENSBTAG00000021020	RIF1	99	68.632	Bos_taurus
MGP_SPRETEiJ_G0024476	Rif1	100	68.682	ENSCJAG00000003138	RIF1	99	68.682	Callithrix_jacchus
MGP_SPRETEiJ_G0024476	Rif1	100	67.671	ENSCAFG00000005670	RIF1	97	67.764	Canis_familiaris
MGP_SPRETEiJ_G0024476	Rif1	100	68.413	ENSCAFG00020016401	RIF1	99	68.506	Canis_lupus_dingo
MGP_SPRETEiJ_G0024476	Rif1	100	69.073	ENSCHIG00000020327	RIF1	99	69.113	Capra_hircus
MGP_SPRETEiJ_G0024476	Rif1	97	81.720	ENSTSYG00000008861	RIF1	99	81.720	Carlito_syrichta
MGP_SPRETEiJ_G0024476	Rif1	79	79.070	ENSCAPG00000008957	RIF1	99	79.070	Cavia_aperea
MGP_SPRETEiJ_G0024476	Rif1	100	67.154	ENSCPOG00000037898	RIF1	99	66.951	Cavia_porcellus
MGP_SPRETEiJ_G0024476	Rif1	100	68.415	ENSCCAG00000024760	RIF1	99	68.415	Cebus_capucinus
MGP_SPRETEiJ_G0024476	Rif1	100	69.891	ENSCATG00000033353	RIF1	99	69.891	Cercocebus_atys
MGP_SPRETEiJ_G0024476	Rif1	96	67.492	ENSCLAG00000001517	RIF1	99	67.282	Chinchilla_lanigera
MGP_SPRETEiJ_G0024476	Rif1	100	69.798	ENSCSAG00000016089	RIF1	99	69.798	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0024476	Rif1	97	71.739	ENSCHOG00000007187	RIF1	97	71.739	Choloepus_hoffmanni
MGP_SPRETEiJ_G0024476	Rif1	93	68.035	ENSCPBG00000025885	RIF1	98	69.208	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0024476	Rif1	100	68.372	ENSCANG00000028962	RIF1	100	69.095	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0024476	Rif1	100	80.654	ENSCGRG00001024589	Rif1	100	80.654	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0024476	Rif1	99	81.341	ENSCGRG00000010713	Rif1	100	81.341	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0024476	Rif1	52	48.610	ENSCSEG00000003945	rif1	54	48.471	Cynoglossus_semilaevis
MGP_SPRETEiJ_G0024476	Rif1	59	48.028	ENSDARG00000062650	rif1	52	51.202	Danio_rerio
MGP_SPRETEiJ_G0024476	Rif1	99	67.489	ENSDNOG00000011194	RIF1	97	67.489	Dasypus_novemcinctus
MGP_SPRETEiJ_G0024476	Rif1	92	69.196	ENSETEG00000012421	RIF1	91	69.172	Echinops_telfairi
MGP_SPRETEiJ_G0024476	Rif1	91	89.667	ENSEASG00005023434	RIF1	98	89.667	Equus_asinus_asinus
MGP_SPRETEiJ_G0024476	Rif1	96	86.103	ENSECAG00000012679	RIF1	99	86.103	Equus_caballus
MGP_SPRETEiJ_G0024476	Rif1	67	49.372	ENSELUG00000006826	rif1	58	48.611	Esox_lucius
MGP_SPRETEiJ_G0024476	Rif1	100	68.061	ENSFCAG00000029742	RIF1	99	68.182	Felis_catus
MGP_SPRETEiJ_G0024476	Rif1	79	62.236	ENSFALG00000013874	RIF1	95	62.236	Ficedula_albicollis
MGP_SPRETEiJ_G0024476	Rif1	100	69.234	ENSFDAG00000006538	RIF1	99	68.950	Fukomys_damarensis
MGP_SPRETEiJ_G0024476	Rif1	63	50.325	ENSFHEG00000013721	rif1	61	52.712	Fundulus_heteroclitus
MGP_SPRETEiJ_G0024476	Rif1	56	50.041	ENSGMOG00000003517	rif1	83	49.639	Gadus_morhua
MGP_SPRETEiJ_G0024476	Rif1	73	57.908	ENSGALG00000012484	RIF1	84	57.908	Gallus_gallus
MGP_SPRETEiJ_G0024476	Rif1	64	54.304	ENSGAFG00000017196	rif1	68	54.211	Gambusia_affinis
MGP_SPRETEiJ_G0024476	Rif1	60	53.778	ENSGACG00000008579	rif1	66	51.200	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0024476	Rif1	90	67.353	ENSGAGG00000012595	RIF1	99	68.529	Gopherus_agassizii
MGP_SPRETEiJ_G0024476	Rif1	89	86.533	ENSGGOG00000040178	RIF1	96	86.533	Gorilla_gorilla
MGP_SPRETEiJ_G0024476	Rif1	94	68.390	ENSHGLG00100009807	RIF1	99	68.091	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0024476	Rif1	64	49.677	ENSHCOG00000015943	rif1	59	49.959	Hippocampus_comes
MGP_SPRETEiJ_G0024476	Rif1	100	70.913	ENSSTOG00000020712	RIF1	99	70.954	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0024476	Rif1	99	69.199	ENSJJAG00000023000	Rif1	100	69.363	Jaculus_jaculus
MGP_SPRETEiJ_G0024476	Rif1	69	48.986	ENSKMAG00000002852	rif1	71	48.487	Kryptolebias_marmoratus
MGP_SPRETEiJ_G0024476	Rif1	70	51.527	ENSLBEG00000023196	rif1	55	51.527	Labrus_bergylta
MGP_SPRETEiJ_G0024476	Rif1	66	62.209	ENSLACG00000005425	RIF1	68	62.209	Latimeria_chalumnae
MGP_SPRETEiJ_G0024476	Rif1	65	53.344	ENSLOCG00000002657	rif1	82	49.679	Lepisosteus_oculatus
MGP_SPRETEiJ_G0024476	Rif1	100	68.127	ENSLAFG00000009796	RIF1	100	68.127	Loxodonta_africana
MGP_SPRETEiJ_G0024476	Rif1	100	69.770	ENSMFAG00000032233	RIF1	99	69.770	Macaca_fascicularis
MGP_SPRETEiJ_G0024476	Rif1	100	69.770	ENSMMUG00000008611	RIF1	99	69.770	Macaca_mulatta
MGP_SPRETEiJ_G0024476	Rif1	100	69.811	ENSMNEG00000031616	RIF1	99	69.811	Macaca_nemestrina
MGP_SPRETEiJ_G0024476	Rif1	100	69.972	ENSMLEG00000042945	RIF1	99	69.972	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0024476	Rif1	59	51.359	ENSMAMG00000001745	rif1	84	51.359	Mastacembelus_armatus
MGP_SPRETEiJ_G0024476	Rif1	65	50.779	ENSMZEG00005020920	rif1	70	50.467	Maylandia_zebra
MGP_SPRETEiJ_G0024476	Rif1	87	54.268	ENSMGAG00000012732	RIF1	99	52.434	Meleagris_gallopavo
MGP_SPRETEiJ_G0024476	Rif1	95	96.100	ENSMAUG00000013158	Rif1	99	96.100	Mesocricetus_auratus
MGP_SPRETEiJ_G0024476	Rif1	100	70.704	ENSMICG00000046127	RIF1	99	70.704	Microcebus_murinus
MGP_SPRETEiJ_G0024476	Rif1	100	78.695	ENSMOCG00000009381	Rif1	100	78.654	Microtus_ochrogaster
MGP_SPRETEiJ_G0024476	Rif1	64	48.923	ENSMMOG00000006519	rif1	64	48.456	Mola_mola
MGP_SPRETEiJ_G0024476	Rif1	100	56.872	ENSMODG00000003703	RIF1	99	56.895	Monodelphis_domestica
MGP_SPRETEiJ_G0024476	Rif1	71	45.741	ENSMALG00000016759	rif1	65	52.025	Monopterus_albus
MGP_SPRETEiJ_G0024476	Rif1	100	94.724	MGP_CAROLIEiJ_G0023555	Rif1	100	94.724	Mus_caroli
MGP_SPRETEiJ_G0024476	Rif1	100	98.063	ENSMUSG00000036202	Rif1	100	98.063	Mus_musculus
MGP_SPRETEiJ_G0024476	Rif1	100	90.339	MGP_PahariEiJ_G0025006	Rif1	100	90.215	Mus_pahari
MGP_SPRETEiJ_G0024476	Rif1	100	68.707	ENSMPUG00000000371	RIF1	99	68.707	Mustela_putorius_furo
MGP_SPRETEiJ_G0024476	Rif1	90	67.682	ENSMLUG00000003376	RIF1	100	67.682	Myotis_lucifugus
MGP_SPRETEiJ_G0024476	Rif1	100	74.132	ENSNGAG00000009268	Rif1	99	74.132	Nannospalax_galili
MGP_SPRETEiJ_G0024476	Rif1	63	51.336	ENSNBRG00000014257	rif1	69	49.538	Neolamprologus_brichardi
MGP_SPRETEiJ_G0024476	Rif1	100	68.054	ENSNLEG00000010955	RIF1	99	68.054	Nomascus_leucogenys
MGP_SPRETEiJ_G0024476	Rif1	80	75.446	ENSMEUG00000007601	-	86	75.446	Notamacropus_eugenii
MGP_SPRETEiJ_G0024476	Rif1	100	67.548	ENSODEG00000003950	RIF1	99	67.548	Octodon_degus
MGP_SPRETEiJ_G0024476	Rif1	63	46.401	ENSONIG00000013657	rif1	61	49.697	Oreochromis_niloticus
MGP_SPRETEiJ_G0024476	Rif1	73	73.352	ENSOANG00000006078	-	91	73.352	Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0024476	Rif1	100	67.785	ENSOCUG00000017435	RIF1	99	67.785	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0024476	Rif1	64	48.157	ENSORLG00020001302	rif1	68	47.878	Oryzias_latipes_hni
MGP_SPRETEiJ_G0024476	Rif1	64	48.157	ENSORLG00015000009	rif1	67	48.196	Oryzias_latipes_hsok
MGP_SPRETEiJ_G0024476	Rif1	64	49.154	ENSOMEG00000021513	rif1	68	48.636	Oryzias_melastigma
MGP_SPRETEiJ_G0024476	Rif1	100	68.425	ENSOGAG00000006141	RIF1	99	68.184	Otolemur_garnettii
MGP_SPRETEiJ_G0024476	Rif1	100	69.206	ENSOARG00000008930	RIF1	99	69.246	Ovis_aries
MGP_SPRETEiJ_G0024476	Rif1	100	69.593	ENSPPAG00000023754	RIF1	99	69.634	Pan_paniscus
MGP_SPRETEiJ_G0024476	Rif1	100	67.926	ENSPPRG00000003618	RIF1	99	68.034	Panthera_pardus
MGP_SPRETEiJ_G0024476	Rif1	100	67.966	ENSPTIG00000020652	RIF1	99	68.074	Panthera_tigris_altaica
MGP_SPRETEiJ_G0024476	Rif1	100	69.754	ENSPTRG00000012534	RIF1	99	69.754	Pan_troglodytes
MGP_SPRETEiJ_G0024476	Rif1	100	69.690	ENSPANG00000008525	RIF1	99	69.690	Papio_anubis
MGP_SPRETEiJ_G0024476	Rif1	64	52.313	ENSPKIG00000004267	rif1	71	52.174	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0024476	Rif1	64	45.527	ENSPMGG00000016141	rif1	75	45.498	Periophthalmus_magnuspinnatus
MGP_SPRETEiJ_G0024476	Rif1	99	81.108	ENSPEMG00000000446	Rif1	99	81.108	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0024476	Rif1	89	73.294	ENSPCIG00000009185	RIF1	99	56.487	Phascolarctos_cinereus
MGP_SPRETEiJ_G0024476	Rif1	64	52.125	ENSPFOG00000017804	rif1	52	51.724	Poecilia_formosa
MGP_SPRETEiJ_G0024476	Rif1	64	52.093	ENSPLAG00000017945	rif1	69	51.610	Poecilia_latipinna
MGP_SPRETEiJ_G0024476	Rif1	65	50.432	ENSPREG00000018052	rif1	65	54.234	Poecilia_reticulata
MGP_SPRETEiJ_G0024476	Rif1	100	69.811	ENSPPYG00000012846	RIF1	99	69.811	Pongo_abelii
MGP_SPRETEiJ_G0024476	Rif1	82	78.641	ENSPCAG00000009032	RIF1	83	78.641	Procavia_capensis
MGP_SPRETEiJ_G0024476	Rif1	100	71.090	ENSPCOG00000027888	RIF1	99	71.038	Propithecus_coquereli
MGP_SPRETEiJ_G0024476	Rif1	93	83.570	ENSPVAG00000014276	RIF1	95	83.570	Pteropus_vampyrus
MGP_SPRETEiJ_G0024476	Rif1	72	46.127	ENSPNYG00000012940	rif1	69	48.246	Pundamilia_nyererei
MGP_SPRETEiJ_G0024476	Rif1	100	86.266	ENSRNOG00000054901	Rif1	100	86.143	Rattus_norvegicus
MGP_SPRETEiJ_G0024476	Rif1	100	68.896	ENSRBIG00000003704	RIF1	99	68.856	Rhinopithecus_bieti
MGP_SPRETEiJ_G0024476	Rif1	100	69.742	ENSRROG00000028206	RIF1	99	69.742	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0024476	Rif1	97	83.871	ENSSBOG00000029530	RIF1	99	83.871	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0024476	Rif1	100	56.411	ENSSHAG00000018552	RIF1	100	55.383	Sarcophilus_harrisii
MGP_SPRETEiJ_G0024476	Rif1	51	49.881	ENSSMAG00000011704	rif1	61	48.776	Scophthalmus_maximus
MGP_SPRETEiJ_G0024476	Rif1	63	51.091	ENSSDUG00000015632	rif1	68	49.645	Seriola_dumerili
MGP_SPRETEiJ_G0024476	Rif1	63	78.498	ENSSARG00000007161	-	59	78.498	Sorex_araneus
MGP_SPRETEiJ_G0024476	Rif1	95	70.149	ENSSPUG00000003062	RIF1	99	70.149	Sphenodon_punctatus
MGP_SPRETEiJ_G0024476	Rif1	59	57.407	ENSSPAG00000018359	rif1	74	57.407	Stegastes_partitus
MGP_SPRETEiJ_G0024476	Rif1	100	69.370	ENSSSCG00000016395	RIF1	99	69.370	Sus_scrofa
MGP_SPRETEiJ_G0024476	Rif1	65	49.845	ENSTRUG00000015808	rif1	70	48.179	Takifugu_rubripes
MGP_SPRETEiJ_G0024476	Rif1	82	82.803	ENSTBEG00000016082	RIF1	81	82.803	Tupaia_belangeri
MGP_SPRETEiJ_G0024476	Rif1	100	70.081	ENSTTRG00000011190	RIF1	99	69.919	Tursiops_truncatus
MGP_SPRETEiJ_G0024476	Rif1	86	82.861	ENSUAMG00000026385	RIF1	97	83.203	Ursus_americanus
MGP_SPRETEiJ_G0024476	Rif1	96	83.382	ENSUMAG00000000337	RIF1	98	83.645	Ursus_maritimus
MGP_SPRETEiJ_G0024476	Rif1	100	67.969	ENSVPAG00000002162	RIF1	99	67.942	Vicugna_pacos
MGP_SPRETEiJ_G0024476	Rif1	100	68.381	ENSVVUG00000011293	RIF1	99	68.381	Vulpes_vulpes
MGP_SPRETEiJ_G0024476	Rif1	71	44.597	ENSXETG00000004530	rif1	53	52.124	Xenopus_tropicalis
MGP_SPRETEiJ_G0024476	Rif1	65	48.047	ENSXMAG00000000506	rif1	65	48.311	Xiphophorus_maculatus