EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0025170 (Gene tree)
Gene ID: -
Gene Symbol: Snrnp200
Alias: A330064G03Rik|Ascc3l1|HELIC2|U5-200KD
Full Name: small nuclear ribonucleoprotein 200 (U5)
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Plus strand
Length: 33121 bases
Position: chr2:127871094-127904214
Accession: 2444401
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0056522	ResIII	PF04851.15	3.2e-25	1	2
MGP_SPRETEiJ_P0056522	ResIII	PF04851.15	3.2e-25	2	2
MGP_SPRETEiJ_P0056522	DEAD	PF00270.29	4.1e-52	1	2
MGP_SPRETEiJ_P0056522	DEAD	PF00270.29	4.1e-52	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0056525	-	722	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0056524	-	593	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0056526	-	741	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0056521	-	2929	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0056523	-	5131	-	MGP_SPRETEiJ_P0056523	1613 (aa)	-	-
MGP_SPRETEiJ_T0056522	-	6745	-	MGP_SPRETEiJ_P0056522	2136 (aa)	-	UPI00001EF960

Gene Model

Click here to download MGP_SPRETEiJ_G0025170's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0025170's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_SPRETEiJ_G0025170	Snrnp200	76	35.061	MGP_SPRETEiJ_G0028495	Hfm1	55	38.415
MGP_SPRETEiJ_G0025170	Snrnp200	86	42.051	MGP_SPRETEiJ_G0016111	Ascc3	75	50.649

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0025170	Snrnp200	100	99.724	ENSG00000144028	SNRNP200	100	99.672	Homo_sapiens
MGP_SPRETEiJ_G0025170	Snrnp200	99	93.803	ENSAPOG00000010223	snrnp200	99	90.730	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0025170	Snrnp200	100	99.625	ENSAMEG00000008996	SNRNP200	100	99.625	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0025170	Snrnp200	96	95.172	ENSACIG00000001764	snrnp200	95	95.172	Amphilophus_citrinellus
MGP_SPRETEiJ_G0025170	Snrnp200	99	93.521	ENSAOCG00000024593	snrnp200	95	95.862	Amphiprion_ocellaris
MGP_SPRETEiJ_G0025170	Snrnp200	96	95.862	ENSAPEG00000012554	snrnp200	95	95.862	Amphiprion_percula
MGP_SPRETEiJ_G0025170	Snrnp200	99	92.394	ENSATEG00000022522	snrnp200	99	90.496	Anabas_testudineus
MGP_SPRETEiJ_G0025170	Snrnp200	99	97.501	ENSAPLG00000004313	SNRNP200	100	97.501	Anas_platyrhynchos
MGP_SPRETEiJ_G0025170	Snrnp200	99	97.264	ENSACAG00000000434	SNRNP200	100	97.264	Anolis_carolinensis
MGP_SPRETEiJ_G0025170	Snrnp200	100	99.724	ENSANAG00000036625	SNRNP200	100	95.569	Aotus_nancymaae
MGP_SPRETEiJ_G0025170	Snrnp200	99	92.394	ENSACLG00000011188	snrnp200	99	90.356	Astatotilapia_calliptera
MGP_SPRETEiJ_G0025170	Snrnp200	99	92.394	ENSAMXG00000005684	snrnp200	99	90.449	Astyanax_mexicanus
MGP_SPRETEiJ_G0025170	Snrnp200	100	99.064	ENSBTAG00000000848	SNRNP200	100	99.064	Bos_taurus
MGP_SPRETEiJ_G0025170	Snrnp200	100	99.724	ENSCJAG00000007514	SNRNP200	100	99.625	Callithrix_jacchus
MGP_SPRETEiJ_G0025170	Snrnp200	100	99.448	ENSCAFG00020019979	SNRNP200	100	99.825	Canis_lupus_dingo
MGP_SPRETEiJ_G0025170	Snrnp200	100	99.251	ENSCHIG00000020611	SNRNP200	100	99.251	Capra_hircus
MGP_SPRETEiJ_G0025170	Snrnp200	100	99.672	ENSTSYG00000010467	SNRNP200	100	99.672	Carlito_syrichta
MGP_SPRETEiJ_G0025170	Snrnp200	99	99.724	ENSCAPG00000017234	SNRNP200	99	99.295	Cavia_aperea
MGP_SPRETEiJ_G0025170	Snrnp200	100	99.724	ENSCPOG00000006776	SNRNP200	100	99.579	Cavia_porcellus
MGP_SPRETEiJ_G0025170	Snrnp200	100	99.724	ENSCCAG00000033962	SNRNP200	100	99.625	Cebus_capucinus
MGP_SPRETEiJ_G0025170	Snrnp200	100	99.724	ENSCATG00000015790	SNRNP200	100	99.672	Cercocebus_atys
MGP_SPRETEiJ_G0025170	Snrnp200	100	99.448	ENSCLAG00000004116	SNRNP200	100	99.438	Chinchilla_lanigera
MGP_SPRETEiJ_G0025170	Snrnp200	100	99.625	ENSCSAG00000017369	SNRNP200	100	99.625	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0025170	Snrnp200	75	98.802	ENSCHOG00000012981	-	59	98.802	Choloepus_hoffmanni
MGP_SPRETEiJ_G0025170	Snrnp200	100	97.522	ENSCPBG00000022571	SNRNP200	100	97.522	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0025170	Snrnp200	99	77.562	ENSCING00000005082	-	99	76.693	Ciona_intestinalis
MGP_SPRETEiJ_G0025170	Snrnp200	100	99.724	ENSCANG00000033932	SNRNP200	100	99.652	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0025170	Snrnp200	100	100.000	ENSCGRG00001022610	Snrnp200	100	99.813	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0025170	Snrnp200	100	99.252	ENSCGRG00000016472	Snrnp200	100	99.252	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0025170	Snrnp200	100	91.436	ENSCSEG00000016399	snrnp200	100	89.841	Cynoglossus_semilaevis
MGP_SPRETEiJ_G0025170	Snrnp200	100	91.436	ENSCVAG00000017631	snrnp200	97	91.436	Cyprinodon_variegatus
MGP_SPRETEiJ_G0025170	Snrnp200	100	91.989	ENSDARG00000077536	snrnp200	99	90.309	Danio_rerio
MGP_SPRETEiJ_G0025170	Snrnp200	100	98.895	ENSDNOG00000011227	SNRNP200	100	98.034	Dasypus_novemcinctus
MGP_SPRETEiJ_G0025170	Snrnp200	100	99.724	ENSDORG00000005861	Snrnp200	100	97.055	Dipodomys_ordii
MGP_SPRETEiJ_G0025170	Snrnp200	100	77.929	FBgn0263599	l(3)72Ab	99	74.115	Drosophila_melanogaster
MGP_SPRETEiJ_G0025170	Snrnp200	95	99.311	ENSETEG00000000162	SNRNP200	74	99.311	Echinops_telfairi
MGP_SPRETEiJ_G0025170	Snrnp200	83	81.256	ENSEBUG00000016524	snrnp200	95	81.256	Eptatretus_burgeri
MGP_SPRETEiJ_G0025170	Snrnp200	100	99.448	ENSEASG00005001884	SNRNP200	100	98.601	Equus_asinus_asinus
MGP_SPRETEiJ_G0025170	Snrnp200	100	99.719	ENSECAG00000019675	SNRNP200	100	99.719	Equus_caballus
MGP_SPRETEiJ_G0025170	Snrnp200	91	100.000	ENSEEUG00000012178	SNRNP200	93	100.000	Erinaceus_europaeus
MGP_SPRETEiJ_G0025170	Snrnp200	99	93.521	ENSELUG00000018948	snrnp200	99	90.777	Esox_lucius
MGP_SPRETEiJ_G0025170	Snrnp200	100	99.672	ENSFCAG00000010699	SNRNP200	100	99.672	Felis_catus
MGP_SPRETEiJ_G0025170	Snrnp200	95	94.475	ENSFALG00000001368	-	95	91.964	Ficedula_albicollis
MGP_SPRETEiJ_G0025170	Snrnp200	100	99.448	ENSFDAG00000004683	SNRNP200	100	99.391	Fukomys_damarensis
MGP_SPRETEiJ_G0025170	Snrnp200	100	90.055	ENSFHEG00000003786	snrnp200	99	87.734	Fundulus_heteroclitus
MGP_SPRETEiJ_G0025170	Snrnp200	100	90.659	ENSGMOG00000004881	snrnp200	99	89.673	Gadus_morhua
MGP_SPRETEiJ_G0025170	Snrnp200	100	90.884	ENSGAFG00000010807	snrnp200	99	87.968	Gambusia_affinis
MGP_SPRETEiJ_G0025170	Snrnp200	100	90.659	ENSGACG00000011474	snrnp200	99	89.865	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0025170	Snrnp200	100	97.238	ENSGAGG00000016069	SNRNP200	99	97.532	Gopherus_agassizii
MGP_SPRETEiJ_G0025170	Snrnp200	100	99.724	ENSGGOG00000005174	SNRNP200	100	99.672	Gorilla_gorilla
MGP_SPRETEiJ_G0025170	Snrnp200	96	94.483	ENSHBUG00000011322	snrnp200	94	94.483	Haplochromis_burtoni
MGP_SPRETEiJ_G0025170	Snrnp200	100	99.724	ENSHGLG00000006654	SNRNP200	100	99.485	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0025170	Snrnp200	100	99.724	ENSHGLG00100018594	SNRNP200	100	99.485	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0025170	Snrnp200	100	99.625	ENSSTOG00000016351	SNRNP200	100	99.625	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0025170	Snrnp200	100	99.579	ENSJJAG00000023659	Snrnp200	100	99.579	Jaculus_jaculus
MGP_SPRETEiJ_G0025170	Snrnp200	100	91.436	ENSKMAG00000003665	snrnp200	99	87.494	Kryptolebias_marmoratus
MGP_SPRETEiJ_G0025170	Snrnp200	100	91.160	ENSLBEG00000021585	snrnp200	99	90.215	Labrus_bergylta
MGP_SPRETEiJ_G0025170	Snrnp200	82	94.722	ENSLACG00000000226	SNRNP200	99	94.722	Latimeria_chalumnae
MGP_SPRETEiJ_G0025170	Snrnp200	100	92.818	ENSLOCG00000015198	snrnp200	99	92.041	Lepisosteus_oculatus
MGP_SPRETEiJ_G0025170	Snrnp200	100	99.345	ENSLAFG00000015626	SNRNP200	100	99.345	Loxodonta_africana
MGP_SPRETEiJ_G0025170	Snrnp200	100	99.724	ENSMFAG00000040174	SNRNP200	100	99.625	Macaca_fascicularis
MGP_SPRETEiJ_G0025170	Snrnp200	100	99.724	ENSMMUG00000023261	SNRNP200	100	99.625	Macaca_mulatta
MGP_SPRETEiJ_G0025170	Snrnp200	100	99.724	ENSMNEG00000032398	SNRNP200	100	99.579	Macaca_nemestrina
MGP_SPRETEiJ_G0025170	Snrnp200	100	99.724	ENSMLEG00000019083	SNRNP200	100	99.672	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0025170	Snrnp200	100	91.436	ENSMAMG00000007851	snrnp200	99	90.126	Mastacembelus_armatus
MGP_SPRETEiJ_G0025170	Snrnp200	96	94.483	ENSMZEG00005010787	snrnp200	94	94.483	Maylandia_zebra
MGP_SPRETEiJ_G0025170	Snrnp200	97	97.049	ENSMGAG00000001831	SNRNP200	100	97.049	Meleagris_gallopavo
MGP_SPRETEiJ_G0025170	Snrnp200	100	100.000	ENSMAUG00000011825	Snrnp200	100	99.860	Mesocricetus_auratus
MGP_SPRETEiJ_G0025170	Snrnp200	100	99.724	ENSMICG00000004710	SNRNP200	100	99.625	Microcebus_murinus
MGP_SPRETEiJ_G0025170	Snrnp200	100	100.000	ENSMOCG00000011814	Snrnp200	100	97.285	Microtus_ochrogaster
MGP_SPRETEiJ_G0025170	Snrnp200	99	92.958	ENSMMOG00000014167	snrnp200	96	92.265	Mola_mola
MGP_SPRETEiJ_G0025170	Snrnp200	100	98.736	ENSMODG00000008475	SNRNP200	100	98.736	Monodelphis_domestica
MGP_SPRETEiJ_G0025170	Snrnp200	99	92.958	ENSMALG00000001973	snrnp200	99	90.590	Monopterus_albus
MGP_SPRETEiJ_G0025170	Snrnp200	100	99.953	MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.953	Mus_caroli
MGP_SPRETEiJ_G0025170	Snrnp200	100	100.000	ENSMUSG00000003660	Snrnp200	100	100.000	Mus_musculus
MGP_SPRETEiJ_G0025170	Snrnp200	100	100.000	MGP_PahariEiJ_G0025695	Snrnp200	100	99.953	Mus_pahari
MGP_SPRETEiJ_G0025170	Snrnp200	100	99.579	ENSMPUG00000008949	SNRNP200	100	99.579	Mustela_putorius_furo
MGP_SPRETEiJ_G0025170	Snrnp200	100	95.225	ENSMLUG00000027511	-	100	95.225	Myotis_lucifugus
MGP_SPRETEiJ_G0025170	Snrnp200	100	98.925	ENSMLUG00000010493	SNRNP200	100	98.925	Myotis_lucifugus
MGP_SPRETEiJ_G0025170	Snrnp200	100	99.766	ENSNGAG00000021993	Snrnp200	100	99.766	Nannospalax_galili
MGP_SPRETEiJ_G0025170	Snrnp200	88	94.483	ENSNBRG00000017960	snrnp200	98	90.261	Neolamprologus_brichardi
MGP_SPRETEiJ_G0025170	Snrnp200	99	99.448	ENSNLEG00000000025	SNRNP200	100	95.110	Nomascus_leucogenys
MGP_SPRETEiJ_G0025170	Snrnp200	100	100.000	ENSMEUG00000010532	SNRNP200	79	100.000	Notamacropus_eugenii
MGP_SPRETEiJ_G0025170	Snrnp200	100	99.724	ENSOPRG00000015464	SNRNP200	100	95.740	Ochotona_princeps
MGP_SPRETEiJ_G0025170	Snrnp200	100	99.438	ENSODEG00000008366	SNRNP200	100	99.438	Octodon_degus
MGP_SPRETEiJ_G0025170	Snrnp200	99	92.676	ENSONIG00000010714	snrnp200	99	90.356	Oreochromis_niloticus
MGP_SPRETEiJ_G0025170	Snrnp200	100	99.724	ENSOCUG00000009864	SNRNP200	100	99.532	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0025170	Snrnp200	100	92.541	ENSORLG00000012286	snrnp200	98	92.541	Oryzias_latipes
MGP_SPRETEiJ_G0025170	Snrnp200	100	92.541	ENSORLG00020004648	snrnp200	100	90.309	Oryzias_latipes_hni
MGP_SPRETEiJ_G0025170	Snrnp200	100	92.541	ENSORLG00015019114	snrnp200	98	92.541	Oryzias_latipes_hsok
MGP_SPRETEiJ_G0025170	Snrnp200	99	92.958	ENSOMEG00000011834	snrnp200	98	92.265	Oryzias_melastigma
MGP_SPRETEiJ_G0025170	Snrnp200	100	99.672	ENSOGAG00000006879	SNRNP200	100	99.672	Otolemur_garnettii
MGP_SPRETEiJ_G0025170	Snrnp200	100	98.222	ENSOARG00000013949	SNRNP200	100	98.222	Ovis_aries
MGP_SPRETEiJ_G0025170	Snrnp200	100	99.724	ENSPPAG00000041559	SNRNP200	100	99.672	Pan_paniscus
MGP_SPRETEiJ_G0025170	Snrnp200	100	99.672	ENSPPRG00000004435	SNRNP200	100	99.672	Panthera_pardus
MGP_SPRETEiJ_G0025170	Snrnp200	100	99.448	ENSPTIG00000006380	SNRNP200	100	99.204	Panthera_tigris_altaica
MGP_SPRETEiJ_G0025170	Snrnp200	100	99.724	ENSPTRG00000012230	SNRNP200	100	99.672	Pan_troglodytes
MGP_SPRETEiJ_G0025170	Snrnp200	100	99.724	ENSPANG00000006017	SNRNP200	100	99.625	Papio_anubis
MGP_SPRETEiJ_G0025170	Snrnp200	100	92.541	ENSPKIG00000014762	snrnp200	99	91.058	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0025170	Snrnp200	100	96.685	ENSPSIG00000008580	SNRNP200	100	96.490	Pelodiscus_sinensis
MGP_SPRETEiJ_G0025170	Snrnp200	53	100.000	ENSPEMG00000020700	-	100	100.000	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0025170	Snrnp200	100	98.736	ENSPCIG00000023050	SNRNP200	100	98.736	Phascolarctos_cinereus
MGP_SPRETEiJ_G0025170	Snrnp200	100	91.160	ENSPFOG00000015110	snrnp200	99	90.314	Poecilia_formosa
MGP_SPRETEiJ_G0025170	Snrnp200	96	92.784	ENSPLAG00000006711	snrnp200	99	90.165	Poecilia_latipinna
MGP_SPRETEiJ_G0025170	Snrnp200	96	92.784	ENSPMEG00000021166	snrnp200	99	90.110	Poecilia_mexicana
MGP_SPRETEiJ_G0025170	Snrnp200	100	91.160	ENSPREG00000008875	snrnp200	99	90.403	Poecilia_reticulata
MGP_SPRETEiJ_G0025170	Snrnp200	100	99.724	ENSPPYG00000012068	SNRNP200	100	99.672	Pongo_abelii
MGP_SPRETEiJ_G0025170	Snrnp200	97	98.718	ENSPCAG00000008536	SNRNP200	89	98.718	Procavia_capensis
MGP_SPRETEiJ_G0025170	Snrnp200	100	99.724	ENSPCOG00000024608	SNRNP200	100	99.672	Propithecus_coquereli
MGP_SPRETEiJ_G0025170	Snrnp200	96	99.320	ENSPVAG00000005860	SNRNP200	93	99.320	Pteropus_vampyrus
MGP_SPRETEiJ_G0025170	Snrnp200	99	92.394	ENSPNYG00000017476	snrnp200	95	91.713	Pundamilia_nyererei
MGP_SPRETEiJ_G0025170	Snrnp200	100	91.713	ENSPNAG00000010998	snrnp200	95	91.713	Pygocentrus_nattereri
MGP_SPRETEiJ_G0025170	Snrnp200	100	100.000	ENSRNOG00000012157	Snrnp200	100	99.860	Rattus_norvegicus
MGP_SPRETEiJ_G0025170	Snrnp200	100	99.724	ENSRBIG00000044690	-	100	99.672	Rhinopithecus_bieti
MGP_SPRETEiJ_G0025170	Snrnp200	100	99.724	ENSRROG00000037952	-	100	99.672	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0025170	Snrnp200	100	99.724	ENSSBOG00000035471	SNRNP200	100	99.625	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0025170	Snrnp200	97	98.645	ENSSHAG00000000758	SNRNP200	100	98.645	Sarcophilus_harrisii
MGP_SPRETEiJ_G0025170	Snrnp200	99	94.648	ENSSFOG00015018826	snrnp200	99	91.526	Scleropages_formosus
MGP_SPRETEiJ_G0025170	Snrnp200	99	92.394	ENSSMAG00000005463	snrnp200	99	90.309	Scophthalmus_maximus
MGP_SPRETEiJ_G0025170	Snrnp200	99	93.239	ENSSDUG00000021410	snrnp200	99	90.590	Seriola_dumerili
MGP_SPRETEiJ_G0025170	Snrnp200	99	92.394	ENSSLDG00000010884	snrnp200	99	90.543	Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0025170	Snrnp200	94	99.296	ENSSARG00000010728	SNRNP200	96	98.123	Sorex_araneus
MGP_SPRETEiJ_G0025170	Snrnp200	100	97.285	ENSSPUG00000003726	-	100	97.285	Sphenodon_punctatus
MGP_SPRETEiJ_G0025170	Snrnp200	99	93.521	ENSSPAG00000001842	snrnp200	99	90.637	Stegastes_partitus
MGP_SPRETEiJ_G0025170	Snrnp200	100	99.485	ENSSSCG00000008127	SNRNP200	100	99.485	Sus_scrofa
MGP_SPRETEiJ_G0025170	Snrnp200	98	89.602	ENSTGUG00000014475	-	100	87.730	Taeniopygia_guttata
MGP_SPRETEiJ_G0025170	Snrnp200	99	92.958	ENSTRUG00000001307	snrnp200	99	90.262	Takifugu_rubripes
MGP_SPRETEiJ_G0025170	Snrnp200	100	89.032	ENSTNIG00000004320	snrnp200	100	85.791	Tetraodon_nigroviridis
MGP_SPRETEiJ_G0025170	Snrnp200	82	99.495	ENSTBEG00000003329	-	67	99.495	Tupaia_belangeri
MGP_SPRETEiJ_G0025170	Snrnp200	100	99.298	ENSTTRG00000004983	SNRNP200	100	99.298	Tursiops_truncatus
MGP_SPRETEiJ_G0025170	Snrnp200	74	100.000	ENSUAMG00000008395	-	90	100.000	Ursus_americanus
MGP_SPRETEiJ_G0025170	Snrnp200	100	99.672	ENSUMAG00000012385	SNRNP200	100	99.672	Ursus_maritimus
MGP_SPRETEiJ_G0025170	Snrnp200	93	100.000	ENSVPAG00000006434	SNRNP200	69	100.000	Vicugna_pacos
MGP_SPRETEiJ_G0025170	Snrnp200	100	99.448	ENSVVUG00000026247	SNRNP200	100	99.440	Vulpes_vulpes
MGP_SPRETEiJ_G0025170	Snrnp200	100	94.250	ENSXETG00000001243	snrnp200	100	94.250	Xenopus_tropicalis
MGP_SPRETEiJ_G0025170	Snrnp200	96	95.172	ENSXMAG00000002058	snrnp200	98	90.418	Xiphophorus_maculatus