EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0025198 (Gene tree)
Gene ID: -
Gene Symbol: Zc3h6
Alias: 4631426G04Rik|4833425H18Rik
Full Name: zinc finger CCCH type containing 6
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Plus strand
Length: 54662 bases
Position: chr2:129716343-129771004
Accession: 1926001
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0056628	zf-CCCH	PF00642.24	2.9e-11	1	2
MGP_SPRETEiJ_P0056628	zf-CCCH	PF00642.24	2.9e-11	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0056628	-	4917	-	MGP_SPRETEiJ_P0056628	1177 (aa)	-	-
MGP_SPRETEiJ_T0056629	-	1485	-	MGP_SPRETEiJ_P0056629	151 (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0025198's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0025198's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_SPRETEiJ_G0025198	Zc3h6	65	49.541	MGP_SPRETEiJ_G0030312	Zc3h4	87	34.646

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0025198	Zc3h6	100	76.742	ENSG00000188177	ZC3H6	100	76.658	Homo_sapiens
MGP_SPRETEiJ_G0025198	Zc3h6	100	73.552	ENSAMEG00000016194	ZC3H6	100	72.773	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0025198	Zc3h6	61	66.321	ENSACIG00000021843	zc3h6	84	42.377	Amphilophus_citrinellus
MGP_SPRETEiJ_G0025198	Zc3h6	61	66.667	ENSAOCG00000004039	zc3h6	90	43.038	Amphiprion_ocellaris
MGP_SPRETEiJ_G0025198	Zc3h6	80	40.201	ENSATEG00000019063	zc3h6	91	42.806	Anabas_testudineus
MGP_SPRETEiJ_G0025198	Zc3h6	99	56.636	ENSAPLG00000014287	ZC3H6	99	57.415	Anas_platyrhynchos
MGP_SPRETEiJ_G0025198	Zc3h6	100	76.678	ENSANAG00000024229	ZC3H6	100	76.342	Aotus_nancymaae
MGP_SPRETEiJ_G0025198	Zc3h6	100	76.846	ENSCJAG00000016479	ZC3H6	100	76.510	Callithrix_jacchus
MGP_SPRETEiJ_G0025198	Zc3h6	100	73.866	ENSCAFG00000007160	ZC3H6	100	72.414	Canis_familiaris
MGP_SPRETEiJ_G0025198	Zc3h6	100	72.185	ENSCAFG00020017525	ZC3H6	100	70.732	Canis_lupus_dingo
MGP_SPRETEiJ_G0025198	Zc3h6	80	70.296	ENSCHIG00000019719	-	95	70.864	Capra_hircus
MGP_SPRETEiJ_G0025198	Zc3h6	100	76.910	ENSTSYG00000031857	ZC3H6	100	76.238	Carlito_syrichta
MGP_SPRETEiJ_G0025198	Zc3h6	99	71.514	ENSCPOG00000003445	ZC3H6	100	72.279	Cavia_porcellus
MGP_SPRETEiJ_G0025198	Zc3h6	100	77.246	ENSCATG00000036595	ZC3H6	100	77.162	Cercocebus_atys
MGP_SPRETEiJ_G0025198	Zc3h6	90	74.510	ENSCLAG00000006605	ZC3H6	100	74.603	Chinchilla_lanigera
MGP_SPRETEiJ_G0025198	Zc3h6	90	76.190	ENSCSAG00000016793	ZC3H6	100	76.097	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0025198	Zc3h6	99	77.119	ENSCANG00000041036	ZC3H6	100	77.034	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0025198	Zc3h6	99	82.268	ENSCGRG00001022022	Zc3h6	99	82.268	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0025198	Zc3h6	99	85.214	ENSCGRG00000016162	Zc3h6	100	85.214	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0025198	Zc3h6	68	54.225	ENSCSEG00000012267	zc3h6	85	52.117	Cynoglossus_semilaevis
MGP_SPRETEiJ_G0025198	Zc3h6	99	67.772	ENSDNOG00000044811	ZC3H6	100	67.517	Dasypus_novemcinctus
MGP_SPRETEiJ_G0025198	Zc3h6	99	73.537	ENSDORG00000013967	Zc3h6	100	73.028	Dipodomys_ordii
MGP_SPRETEiJ_G0025198	Zc3h6	83	74.168	ENSEASG00005006493	ZC3H6	99	74.168	Equus_asinus_asinus
MGP_SPRETEiJ_G0025198	Zc3h6	100	75.399	ENSECAG00000023620	ZC3H6	100	75.063	Equus_caballus
MGP_SPRETEiJ_G0025198	Zc3h6	82	66.543	ENSEEUG00000013883	-	85	66.729	Erinaceus_europaeus
MGP_SPRETEiJ_G0025198	Zc3h6	100	74.538	ENSFCAG00000008089	ZC3H6	100	74.118	Felis_catus
MGP_SPRETEiJ_G0025198	Zc3h6	99	57.346	ENSFALG00000011589	ZC3H6	99	57.358	Ficedula_albicollis
MGP_SPRETEiJ_G0025198	Zc3h6	99	75.722	ENSFDAG00000002521	ZC3H6	99	75.637	Fukomys_damarensis
MGP_SPRETEiJ_G0025198	Zc3h6	99	56.978	ENSGALG00000008269	ZC3H6	98	57.556	Gallus_gallus
MGP_SPRETEiJ_G0025198	Zc3h6	61	60.622	ENSGAFG00000006771	zc3h6	77	60.000	Gambusia_affinis
MGP_SPRETEiJ_G0025198	Zc3h6	62	60.094	ENSGACG00000005343	zc3h6	92	42.884	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0025198	Zc3h6	99	58.927	ENSGAGG00000010857	ZC3H6	99	58.774	Gopherus_agassizii
MGP_SPRETEiJ_G0025198	Zc3h6	100	77.078	ENSGGOG00000001665	ZC3H6	100	76.994	Gorilla_gorilla
MGP_SPRETEiJ_G0025198	Zc3h6	99	75.318	ENSHGLG00000011882	ZC3H6	96	75.403	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0025198	Zc3h6	99	73.810	ENSHGLG00100002559	ZC3H6	100	73.810	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0025198	Zc3h6	85	42.585	ENSHCOG00000012519	zc3h6	89	45.085	Hippocampus_comes
MGP_SPRETEiJ_G0025198	Zc3h6	90	74.230	ENSSTOG00000008120	-	100	74.323	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0025198	Zc3h6	100	76.684	ENSJJAG00000013206	Zc3h6	100	76.768	Jaculus_jaculus
MGP_SPRETEiJ_G0025198	Zc3h6	61	64.583	ENSKMAG00000016252	zc3h6	85	45.684	Kryptolebias_marmoratus
MGP_SPRETEiJ_G0025198	Zc3h6	63	64.249	ENSLBEG00000003054	zc3h6	95	39.038	Labrus_bergylta
MGP_SPRETEiJ_G0025198	Zc3h6	99	45.927	ENSLACG00000012014	ZC3H6	100	46.597	Latimeria_chalumnae
MGP_SPRETEiJ_G0025198	Zc3h6	100	42.486	ENSLOCG00000016548	zc3h6	98	42.869	Lepisosteus_oculatus
MGP_SPRETEiJ_G0025198	Zc3h6	93	70.300	ENSLAFG00000001151	ZC3H6	100	70.125	Loxodonta_africana
MGP_SPRETEiJ_G0025198	Zc3h6	100	77.414	ENSMFAG00000036963	ZC3H6	100	77.330	Macaca_fascicularis
MGP_SPRETEiJ_G0025198	Zc3h6	100	77.330	ENSMMUG00000016430	ZC3H6	100	77.246	Macaca_mulatta
MGP_SPRETEiJ_G0025198	Zc3h6	100	77.162	ENSMNEG00000031225	ZC3H6	100	77.078	Macaca_nemestrina
MGP_SPRETEiJ_G0025198	Zc3h6	100	77.330	ENSMLEG00000038821	ZC3H6	100	77.246	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0025198	Zc3h6	99	57.225	ENSMGAG00000003025	ZC3H6	99	57.803	Meleagris_gallopavo
MGP_SPRETEiJ_G0025198	Zc3h6	100	84.759	ENSMAUG00000017009	Zc3h6	100	84.759	Mesocricetus_auratus
MGP_SPRETEiJ_G0025198	Zc3h6	100	77.246	ENSMICG00000036353	ZC3H6	100	76.658	Microcebus_murinus
MGP_SPRETEiJ_G0025198	Zc3h6	100	84.126	ENSMOCG00000002054	Zc3h6	100	84.126	Microtus_ochrogaster
MGP_SPRETEiJ_G0025198	Zc3h6	99	61.738	ENSMODG00000006612	ZC3H6	100	61.404	Monodelphis_domestica
MGP_SPRETEiJ_G0025198	Zc3h6	61	64.975	ENSMALG00000002048	zc3h6	98	38.488	Monopterus_albus
MGP_SPRETEiJ_G0025198	Zc3h6	100	96.007	MGP_CAROLIEiJ_G0024278	Zc3h6	100	96.007	Mus_caroli
MGP_SPRETEiJ_G0025198	Zc3h6	100	98.471	ENSMUSG00000042851	Zc3h6	100	98.471	Mus_musculus
MGP_SPRETEiJ_G0025198	Zc3h6	100	94.647	MGP_PahariEiJ_G0025723	Zc3h6	100	94.647	Mus_pahari
MGP_SPRETEiJ_G0025198	Zc3h6	90	71.709	ENSMPUG00000009624	ZC3H6	100	71.429	Mustela_putorius_furo
MGP_SPRETEiJ_G0025198	Zc3h6	99	70.000	ENSMLUG00000004896	ZC3H6	99	70.168	Myotis_lucifugus
MGP_SPRETEiJ_G0025198	Zc3h6	94	76.139	ENSNGAG00000013596	Zc3h6	99	76.143	Nannospalax_galili
MGP_SPRETEiJ_G0025198	Zc3h6	60	64.216	ENSNBRG00000015382	zc3h6	84	42.825	Neolamprologus_brichardi
MGP_SPRETEiJ_G0025198	Zc3h6	99	76.481	ENSNLEG00000033657	ZC3H6	99	76.396	Nomascus_leucogenys
MGP_SPRETEiJ_G0025198	Zc3h6	100	70.756	ENSOPRG00000012717	ZC3H6	100	70.672	Ochotona_princeps
MGP_SPRETEiJ_G0025198	Zc3h6	94	73.132	ENSODEG00000009099	ZC3H6	99	73.393	Octodon_degus
MGP_SPRETEiJ_G0025198	Zc3h6	82	44.586	ENSONIG00000009880	zc3h6	90	41.652	Oreochromis_niloticus
MGP_SPRETEiJ_G0025198	Zc3h6	99	63.016	ENSOANG00000012054	-	96	63.100	Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0025198	Zc3h6	95	73.628	ENSOCUG00000011125	ZC3H6	100	72.854	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0025198	Zc3h6	61	67.188	ENSORLG00000011179	zc3h6	86	47.021	Oryzias_latipes
MGP_SPRETEiJ_G0025198	Zc3h6	82	44.872	ENSORLG00020017202	zc3h6	86	47.021	Oryzias_latipes_hni
MGP_SPRETEiJ_G0025198	Zc3h6	82	45.085	ENSORLG00015001664	zc3h6	86	47.234	Oryzias_latipes_hsok
MGP_SPRETEiJ_G0025198	Zc3h6	82	45.299	ENSOMEG00000001296	zc3h6	86	46.452	Oryzias_melastigma
MGP_SPRETEiJ_G0025198	Zc3h6	99	76.122	ENSOGAG00000002556	ZC3H6	100	75.445	Otolemur_garnettii
MGP_SPRETEiJ_G0025198	Zc3h6	100	71.812	ENSOARG00000014503	ZC3H6	100	71.225	Ovis_aries
MGP_SPRETEiJ_G0025198	Zc3h6	99	76.864	ENSPPAG00000030495	ZC3H6	100	76.780	Pan_paniscus
MGP_SPRETEiJ_G0025198	Zc3h6	100	74.622	ENSPPRG00000005673	ZC3H6	100	74.202	Panthera_pardus
MGP_SPRETEiJ_G0025198	Zc3h6	99	73.249	ENSPTIG00000015800	ZC3H6	99	72.827	Panthera_tigris_altaica
MGP_SPRETEiJ_G0025198	Zc3h6	100	77.078	ENSPTRG00000012363	ZC3H6	100	76.994	Pan_troglodytes
MGP_SPRETEiJ_G0025198	Zc3h6	100	77.078	ENSPANG00000025224	ZC3H6	100	76.994	Papio_anubis
MGP_SPRETEiJ_G0025198	Zc3h6	60	68.750	ENSPKIG00000007353	zc3h6	91	68.750	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0025198	Zc3h6	99	58.194	ENSPSIG00000002520	ZC3H6	100	58.918	Pelodiscus_sinensis
MGP_SPRETEiJ_G0025198	Zc3h6	99	82.797	ENSPEMG00000000918	Zc3h6	100	82.797	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0025198	Zc3h6	90	63.552	ENSPCIG00000029741	ZC3H6	100	63.182	Phascolarctos_cinereus
MGP_SPRETEiJ_G0025198	Zc3h6	61	64.583	ENSPFOG00000015748	zc3h6	86	46.681	Poecilia_formosa
MGP_SPRETEiJ_G0025198	Zc3h6	61	64.583	ENSPLAG00000002469	zc3h6	86	46.681	Poecilia_latipinna
MGP_SPRETEiJ_G0025198	Zc3h6	61	64.583	ENSPMEG00000020802	zc3h6	83	64.550	Poecilia_mexicana
MGP_SPRETEiJ_G0025198	Zc3h6	66	62.136	ENSPREG00000023126	zc3h6	94	41.880	Poecilia_reticulata
MGP_SPRETEiJ_G0025198	Zc3h6	78	68.035	ENSPCAG00000015468	ZC3H6	77	66.631	Procavia_capensis
MGP_SPRETEiJ_G0025198	Zc3h6	100	76.994	ENSPCOG00000016627	ZC3H6	100	75.819	Propithecus_coquereli
MGP_SPRETEiJ_G0025198	Zc3h6	69	87.129	ENSPVAG00000013728	ZC3H6	70	87.129	Pteropus_vampyrus
MGP_SPRETEiJ_G0025198	Zc3h6	62	63.725	ENSPNYG00000018130	zc3h6	85	43.237	Pundamilia_nyererei
MGP_SPRETEiJ_G0025198	Zc3h6	79	41.461	ENSPNAG00000009331	zc3h6	98	39.203	Pygocentrus_nattereri
MGP_SPRETEiJ_G0025198	Zc3h6	100	91.617	ENSRNOG00000026277	Zc3h6	100	91.025	Rattus_norvegicus
MGP_SPRETEiJ_G0025198	Zc3h6	100	76.846	ENSSBOG00000033489	ZC3H6	100	76.510	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0025198	Zc3h6	83	63.317	ENSSHAG00000016634	ZC3H6	100	63.317	Sarcophilus_harrisii
MGP_SPRETEiJ_G0025198	Zc3h6	100	37.420	ENSSFOG00015004488	zc3h6	98	38.952	Scleropages_formosus
MGP_SPRETEiJ_G0025198	Zc3h6	62	62.745	ENSSMAG00000008411	zc3h6	90	42.207	Scophthalmus_maximus
MGP_SPRETEiJ_G0025198	Zc3h6	61	66.667	ENSSDUG00000006105	zc3h6	91	43.828	Seriola_dumerili
MGP_SPRETEiJ_G0025198	Zc3h6	61	66.667	ENSSLDG00000021813	zc3h6	91	43.828	Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0025198	Zc3h6	99	68.390	ENSSARG00000001035	ZC3H6	100	68.136	Sorex_araneus
MGP_SPRETEiJ_G0025198	Zc3h6	61	60.630	ENSSPUG00000013031	-	62	48.889	Sphenodon_punctatus
MGP_SPRETEiJ_G0025198	Zc3h6	100	74.958	ENSSSCG00000008096	ZC3H6	100	74.286	Sus_scrofa
MGP_SPRETEiJ_G0025198	Zc3h6	99	56.478	ENSTGUG00000007468	ZC3H6	100	56.977	Taeniopygia_guttata
MGP_SPRETEiJ_G0025198	Zc3h6	80	40.061	ENSTRUG00000012901	zc3h6	98	38.228	Takifugu_rubripes
MGP_SPRETEiJ_G0025198	Zc3h6	67	51.140	ENSTNIG00000016608	zc3h6	82	54.444	Tetraodon_nigroviridis
MGP_SPRETEiJ_G0025198	Zc3h6	85	74.275	ENSTBEG00000016232	ZC3H6	91	71.377	Tupaia_belangeri
MGP_SPRETEiJ_G0025198	Zc3h6	76	83.168	ENSTTRG00000013154	ZC3H6	75	83.168	Tursiops_truncatus
MGP_SPRETEiJ_G0025198	Zc3h6	90	72.362	ENSUAMG00000002401	ZC3H6	100	71.709	Ursus_americanus
MGP_SPRETEiJ_G0025198	Zc3h6	90	72.362	ENSUMAG00000008663	ZC3H6	100	71.709	Ursus_maritimus
MGP_SPRETEiJ_G0025198	Zc3h6	99	73.243	ENSVPAG00000005912	ZC3H6	100	72.650	Vicugna_pacos
MGP_SPRETEiJ_G0025198	Zc3h6	90	72.897	ENSVVUG00000028662	ZC3H6	100	72.123	Vulpes_vulpes
MGP_SPRETEiJ_G0025198	Zc3h6	87	55.270	ENSXETG00000013762	zc3h6	95	56.183	Xenopus_tropicalis
MGP_SPRETEiJ_G0025198	Zc3h6	56	59.459	ENSXCOG00000011662	zc3h6	76	53.333	Xiphophorus_couchianus
MGP_SPRETEiJ_G0025198	Zc3h6	61	64.583	ENSXMAG00000020822	zc3h6	86	45.851	Xiphophorus_maculatus