EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0025526 (Gene tree)
Gene ID: -
Gene Symbol: Chd6
Alias: 5430439G14Rik|6330406J24Rik
Full Name: chromodomain helicase DNA binding protein 6
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Minus strand
Length: 163202 bases
Position: chr2:162909091-163072292
Accession: 1918639
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0058074	ResIII	PF04851.15	4.2e-08	1	1
MGP_SPRETEiJ_P0058070	ResIII	PF04851.15	2.6e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0058080	-	5050	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0058079	-	675	-	MGP_SPRETEiJ_P0058079	217 (aa)	-	-
MGP_SPRETEiJ_T0058078	-	646	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0058075	-	601	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0058074	-	3608	-	MGP_SPRETEiJ_P0058074	1183 (aa)	-	-
MGP_SPRETEiJ_T0058077	-	616	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0058076	-	3090	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0058071	-	726	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0058070	-	10506	-	MGP_SPRETEiJ_P0058070	2711 (aa)	-	-
MGP_SPRETEiJ_T0058073	-	3963	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0058072	-	764	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0025526's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0025526's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_SPRETEiJ_G0025526	Chd6	61	37.927	MGP_SPRETEiJ_G0030962	Chd2	62	32.663
MGP_SPRETEiJ_G0025526	Chd6	76	66.944	MGP_SPRETEiJ_G0026745	Chd7	72	64.902
MGP_SPRETEiJ_G0025526	Chd6	87	68.786	MGP_SPRETEiJ_G0032483	Chd9	74	61.347
MGP_SPRETEiJ_G0025526	Chd6	66	36.621	MGP_SPRETEiJ_G0027850	Chd5	51	34.657

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0025526	Chd6	100	94.684	ENSG00000124177	CHD6	99	96.599	Homo_sapiens
MGP_SPRETEiJ_G0025526	Chd6	89	80.582	ENSAPOG00000013736	chd6	61	75.802	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0025526	Chd6	100	94.346	ENSAMEG00000009496	CHD6	100	87.422	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0025526	Chd6	89	80.169	ENSATEG00000005608	chd6	66	71.597	Anabas_testudineus
MGP_SPRETEiJ_G0025526	Chd6	99	85.277	ENSAPLG00000015592	CHD6	100	71.528	Anas_platyrhynchos
MGP_SPRETEiJ_G0025526	Chd6	99	78.613	ENSACAG00000006842	CHD6	99	66.859	Anolis_carolinensis
MGP_SPRETEiJ_G0025526	Chd6	100	94.599	ENSANAG00000037548	CHD6	99	91.009	Aotus_nancymaae
MGP_SPRETEiJ_G0025526	Chd6	86	78.999	ENSAMXG00000009576	chd6	77	69.170	Astyanax_mexicanus
MGP_SPRETEiJ_G0025526	Chd6	100	92.911	ENSBTAG00000005733	CHD6	100	84.717	Bos_taurus
MGP_SPRETEiJ_G0025526	Chd6	100	94.515	ENSCJAG00000017920	CHD6	99	90.826	Callithrix_jacchus
MGP_SPRETEiJ_G0025526	Chd6	100	94.262	ENSCAFG00000009236	CHD6	100	87.344	Canis_familiaris
MGP_SPRETEiJ_G0025526	Chd6	99	94.293	ENSCAFG00020012906	CHD6	99	93.541	Canis_lupus_dingo
MGP_SPRETEiJ_G0025526	Chd6	100	92.827	ENSCHIG00000017606	CHD6	100	84.680	Capra_hircus
MGP_SPRETEiJ_G0025526	Chd6	84	87.642	ENSTSYG00000014635	CHD6	100	87.686	Carlito_syrichta
MGP_SPRETEiJ_G0025526	Chd6	100	94.346	ENSCPOG00000015641	CHD6	100	88.525	Cavia_porcellus
MGP_SPRETEiJ_G0025526	Chd6	100	94.684	ENSCCAG00000036828	CHD6	99	91.009	Cebus_capucinus
MGP_SPRETEiJ_G0025526	Chd6	100	94.515	ENSCATG00000039248	CHD6	99	91.009	Cercocebus_atys
MGP_SPRETEiJ_G0025526	Chd6	100	94.262	ENSCLAG00000013743	CHD6	100	88.183	Chinchilla_lanigera
MGP_SPRETEiJ_G0025526	Chd6	100	94.768	ENSCSAG00000013997	CHD6	100	88.240	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0025526	Chd6	100	85.907	ENSCHOG00000012647	CHD6	95	87.212	Choloepus_hoffmanni
MGP_SPRETEiJ_G0025526	Chd6	100	86.062	ENSCPBG00000019382	CHD6	99	72.767	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0025526	Chd6	100	94.768	ENSCANG00000043435	CHD6	99	91.009	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0025526	Chd6	100	97.466	ENSCGRG00001002694	Chd6	100	94.068	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0025526	Chd6	74	96.708	ENSCGRG00000006749	-	99	96.822	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0025526	Chd6	99	77.425	ENSDARG00000017244	chd6	79	72.962	Danio_rerio
MGP_SPRETEiJ_G0025526	Chd6	99	93.957	ENSDNOG00000004176	CHD6	99	86.020	Dasypus_novemcinctus
MGP_SPRETEiJ_G0025526	Chd6	99	94.444	ENSEASG00005023433	CHD6	95	95.174	Equus_asinus_asinus
MGP_SPRETEiJ_G0025526	Chd6	99	94.421	ENSECAG00000011761	CHD6	100	87.633	Equus_caballus
MGP_SPRETEiJ_G0025526	Chd6	73	87.558	ENSELUG00000012309	chd6	89	79.664	Esox_lucius
MGP_SPRETEiJ_G0025526	Chd6	100	94.515	ENSFCAG00000003572	CHD6	100	87.385	Felis_catus
MGP_SPRETEiJ_G0025526	Chd6	100	84.422	ENSFALG00000012563	CHD6	99	70.155	Ficedula_albicollis
MGP_SPRETEiJ_G0025526	Chd6	99	94.473	ENSFDAG00000013791	CHD6	99	88.672	Fukomys_damarensis
MGP_SPRETEiJ_G0025526	Chd6	85	75.074	ENSGMOG00000011715	chd6	85	69.478	Gadus_morhua
MGP_SPRETEiJ_G0025526	Chd6	89	76.692	ENSGACG00000000037	chd6	86	69.386	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0025526	Chd6	100	94.684	ENSGGOG00000013123	CHD6	99	91.009	Gorilla_gorilla
MGP_SPRETEiJ_G0025526	Chd6	92	78.565	ENSHBUG00000014701	chd6	65	72.861	Haplochromis_burtoni
MGP_SPRETEiJ_G0025526	Chd6	100	94.430	ENSHGLG00000004548	CHD6	100	88.750	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0025526	Chd6	100	94.430	ENSHGLG00100006401	CHD6	100	88.750	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0025526	Chd6	85	83.647	ENSIPUG00000003692	chd6	78	75.935	Ictalurus_punctatus
MGP_SPRETEiJ_G0025526	Chd6	100	94.346	ENSSTOG00000013382	CHD6	100	89.224	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0025526	Chd6	99	80.488	ENSLACG00000010881	CHD6	83	76.333	Latimeria_chalumnae
MGP_SPRETEiJ_G0025526	Chd6	83	87.054	ENSLOCG00000007386	chd6	86	75.167	Lepisosteus_oculatus
MGP_SPRETEiJ_G0025526	Chd6	100	94.177	ENSLAFG00000012144	CHD6	100	87.128	Loxodonta_africana
MGP_SPRETEiJ_G0025526	Chd6	100	94.768	ENSMFAG00000032830	CHD6	99	91.009	Macaca_fascicularis
MGP_SPRETEiJ_G0025526	Chd6	100	94.768	ENSMMUG00000020458	CHD6	99	91.009	Macaca_mulatta
MGP_SPRETEiJ_G0025526	Chd6	100	94.768	ENSMNEG00000040847	CHD6	99	91.009	Macaca_nemestrina
MGP_SPRETEiJ_G0025526	Chd6	99	94.719	ENSMLEG00000031965	CHD6	99	91.009	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0025526	Chd6	92	76.378	ENSMAMG00000013111	chd6	64	80.435	Mastacembelus_armatus
MGP_SPRETEiJ_G0025526	Chd6	99	85.106	ENSMGAG00000001121	CHD6	100	71.130	Meleagris_gallopavo
MGP_SPRETEiJ_G0025526	Chd6	99	94.889	ENSMICG00000016641	CHD6	99	91.560	Microcebus_murinus
MGP_SPRETEiJ_G0025526	Chd6	74	96.368	ENSMOCG00000014004	-	97	96.481	Microtus_ochrogaster
MGP_SPRETEiJ_G0025526	Chd6	75	95.805	ENSMODG00000000720	-	99	78.232	Monodelphis_domestica
MGP_SPRETEiJ_G0025526	Chd6	100	99.746	MGP_CAROLIEiJ_G0024604	Chd6	100	99.746	Mus_caroli
MGP_SPRETEiJ_G0025526	Chd6	100	99.831	ENSMUSG00000057133	Chd6	100	99.831	Mus_musculus
MGP_SPRETEiJ_G0025526	Chd6	100	99.577	MGP_PahariEiJ_G0026048	Chd6	100	99.577	Mus_pahari
MGP_SPRETEiJ_G0025526	Chd6	100	94.430	ENSMPUG00000017695	CHD6	100	86.134	Mustela_putorius_furo
MGP_SPRETEiJ_G0025526	Chd6	100	93.840	ENSMLUG00000016247	CHD6	100	86.760	Myotis_lucifugus
MGP_SPRETEiJ_G0025526	Chd6	91	77.676	ENSNBRG00000013839	chd6	80	72.513	Neolamprologus_brichardi
MGP_SPRETEiJ_G0025526	Chd6	100	92.249	ENSNLEG00000006496	CHD6	99	87.223	Nomascus_leucogenys
MGP_SPRETEiJ_G0025526	Chd6	100	90.633	ENSOPRG00000013376	-	100	83.854	Ochotona_princeps
MGP_SPRETEiJ_G0025526	Chd6	91	80.183	ENSONIG00000000393	chd6	84	74.494	Oreochromis_niloticus
MGP_SPRETEiJ_G0025526	Chd6	99	86.276	ENSOANG00000014347	CHD6	99	68.698	Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0025526	Chd6	99	94.421	ENSOCUG00000012394	CHD6	100	85.867	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0025526	Chd6	85	82.905	ENSORLG00020021891	chd6	95	85.571	Oryzias_latipes_hni
MGP_SPRETEiJ_G0025526	Chd6	99	94.178	ENSOGAG00000002427	CHD6	100	86.718	Otolemur_garnettii
MGP_SPRETEiJ_G0025526	Chd6	99	92.308	ENSOARG00000002597	CHD6	100	82.537	Ovis_aries
MGP_SPRETEiJ_G0025526	Chd6	100	94.515	ENSPPRG00000014756	CHD6	100	87.422	Panthera_pardus
MGP_SPRETEiJ_G0025526	Chd6	100	94.515	ENSPTIG00000011094	CHD6	100	87.312	Panthera_tigris_altaica
MGP_SPRETEiJ_G0025526	Chd6	100	94.684	ENSPTRG00000013504	CHD6	99	91.009	Pan_troglodytes
MGP_SPRETEiJ_G0025526	Chd6	100	94.852	ENSPANG00000025554	CHD6	99	91.193	Papio_anubis
MGP_SPRETEiJ_G0025526	Chd6	89	80.664	ENSPKIG00000005578	chd6	79	72.589	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0025526	Chd6	80	84.696	ENSPMGG00000014877	chd6	84	74.777	Periophthalmus_magnuspinnatus
MGP_SPRETEiJ_G0025526	Chd6	74	96.347	ENSPEMG00000014672	-	99	92.844	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0025526	Chd6	100	88.711	ENSPCIG00000028037	CHD6	100	77.468	Phascolarctos_cinereus
MGP_SPRETEiJ_G0025526	Chd6	92	78.442	ENSPLAG00000003128	chd6	63	73.459	Poecilia_latipinna
MGP_SPRETEiJ_G0025526	Chd6	86	82.843	ENSPREG00000022653	chd6	99	85.714	Poecilia_reticulata
MGP_SPRETEiJ_G0025526	Chd6	100	94.599	ENSPPYG00000011016	CHD6	100	88.244	Pongo_abelii
MGP_SPRETEiJ_G0025526	Chd6	100	94.852	ENSPCOG00000001089	CHD6	99	91.009	Propithecus_coquereli
MGP_SPRETEiJ_G0025526	Chd6	91	79.908	ENSPNYG00000022516	chd6	80	73.574	Pundamilia_nyererei
MGP_SPRETEiJ_G0025526	Chd6	84	82.036	ENSPNAG00000012825	chd6	79	70.457	Pygocentrus_nattereri
MGP_SPRETEiJ_G0025526	Chd6	100	98.311	ENSRNOG00000016744	Chd6	100	95.647	Rattus_norvegicus
MGP_SPRETEiJ_G0025526	Chd6	100	94.599	ENSSBOG00000022089	CHD6	99	91.009	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0025526	Chd6	100	88.449	ENSSHAG00000017072	CHD6	100	77.183	Sarcophilus_harrisii
MGP_SPRETEiJ_G0025526	Chd6	91	81.953	ENSSFOG00015012920	chd6	81	72.242	Scleropages_formosus
MGP_SPRETEiJ_G0025526	Chd6	72	98.684	ENSSARG00000002615	-	61	98.684	Sorex_araneus
MGP_SPRETEiJ_G0025526	Chd6	100	93.502	ENSSSCG00000007360	CHD6	100	87.656	Sus_scrofa
MGP_SPRETEiJ_G0025526	Chd6	93	88.778	ENSTGUG00000003179	CHD6	100	72.422	Taeniopygia_guttata
MGP_SPRETEiJ_G0025526	Chd6	80	85.189	ENSTNIG00000017487	chd6	100	56.827	Tetraodon_nigroviridis
MGP_SPRETEiJ_G0025526	Chd6	100	92.911	ENSTTRG00000013438	CHD6	100	83.578	Tursiops_truncatus
MGP_SPRETEiJ_G0025526	Chd6	99	94.378	ENSUAMG00000024036	CHD6	95	93.629	Ursus_americanus
MGP_SPRETEiJ_G0025526	Chd6	99	94.373	ENSUMAG00000002017	CHD6	95	93.629	Ursus_maritimus
MGP_SPRETEiJ_G0025526	Chd6	95	89.432	ENSVPAG00000007941	CHD6	95	87.201	Vicugna_pacos
MGP_SPRETEiJ_G0025526	Chd6	100	94.262	ENSVVUG00000029164	CHD6	100	87.275	Vulpes_vulpes
MGP_SPRETEiJ_G0025526	Chd6	100	71.741	ENSXETG00000021445	chd6	100	60.561	Xenopus_tropicalis