EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0025665 (Gene tree)
Gene ID: -
Gene Symbol: Rbm38
Alias: Rnpc1|Seb4l
Full Name: RNA binding motif protein 38
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Plus strand
Length: 14310 bases
Position: chr2:175911682-175925991
Accession: 1889294
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0058644	RRM_1	PF00076.22	1.1e-17	1	1
MGP_SPRETEiJ_P0058646	RRM_1	PF00076.22	1.1e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0058651	-	1527	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0058650	-	758	-	MGP_SPRETEiJ_P0058650	29 (aa)	-	UPI00021CF755
MGP_SPRETEiJ_T0058646	-	1769	-	MGP_SPRETEiJ_P0058646	237 (aa)	-	-
MGP_SPRETEiJ_T0058647	-	2281	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0058644	-	2073	-	MGP_SPRETEiJ_P0058644	237 (aa)	-	-
MGP_SPRETEiJ_T0058645	-	936	-	MGP_SPRETEiJ_P0058645	78 (aa)	-	UPI00021CF752
MGP_SPRETEiJ_T0058648	-	620	-	MGP_SPRETEiJ_P0058648	107 (aa)	-	-
MGP_SPRETEiJ_T0058649	-	440	-	MGP_SPRETEiJ_P0058649	125 (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0025665's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0025665's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_SPRETEiJ_G0025665	Rbm38	66	46.809	MGP_SPRETEiJ_G0028624	Msi1	61	51.064
MGP_SPRETEiJ_G0025665	Rbm38	70	38.095	MGP_SPRETEiJ_G0017795	Msi2	86	33.562
MGP_SPRETEiJ_G0025665	Rbm38	74	38.043	MGP_SPRETEiJ_G0016386	Cirbp	78	40.476
MGP_SPRETEiJ_G0025665	Rbm38	63	91.837	MGP_SPRETEiJ_G0019360	Rbm24	100	68.067
MGP_SPRETEiJ_G0025665	Rbm38	77	35.484	MGP_SPRETEiJ_G0016392	Dazap1	86	35.802

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0025665	Rbm38	100	94.142	ENSG00000132819	RBM38	100	94.215	Homo_sapiens
MGP_SPRETEiJ_G0025665	Rbm38	94	64.758	ENSAPOG00000009939	-	97	62.115	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0025665	Rbm38	89	58.621	ENSAPOG00000003301	rbm38	91	58.621	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0025665	Rbm38	89	56.652	ENSACIG00000000010	rbm38	91	56.652	Amphilophus_citrinellus
MGP_SPRETEiJ_G0025665	Rbm38	94	66.087	ENSACIG00000012502	-	100	87.179	Amphilophus_citrinellus
MGP_SPRETEiJ_G0025665	Rbm38	95	63.913	ENSAOCG00000012559	RBM38	93	61.739	Amphiprion_ocellaris
MGP_SPRETEiJ_G0025665	Rbm38	89	58.621	ENSAOCG00000013497	-	91	58.621	Amphiprion_ocellaris
MGP_SPRETEiJ_G0025665	Rbm38	94	62.295	ENSAPEG00000023581	-	97	60.494	Amphiprion_percula
MGP_SPRETEiJ_G0025665	Rbm38	89	62.791	ENSAPEG00000013137	rbm38	88	62.791	Amphiprion_percula
MGP_SPRETEiJ_G0025665	Rbm38	94	62.551	ENSATEG00000016710	-	92	62.771	Anabas_testudineus
MGP_SPRETEiJ_G0025665	Rbm38	91	61.161	ENSATEG00000016366	rbm38	94	61.161	Anabas_testudineus
MGP_SPRETEiJ_G0025665	Rbm38	92	78.182	ENSACAG00000016238	RBM38	95	73.043	Anolis_carolinensis
MGP_SPRETEiJ_G0025665	Rbm38	91	95.833	ENSANAG00000031959	RBM38	100	95.833	Aotus_nancymaae
MGP_SPRETEiJ_G0025665	Rbm38	94	63.786	ENSACLG00000019514	-	97	61.317	Astatotilapia_calliptera
MGP_SPRETEiJ_G0025665	Rbm38	94	65.106	ENSAMXG00000015601	-	97	63.830	Astyanax_mexicanus
MGP_SPRETEiJ_G0025665	Rbm38	78	63.784	ENSAMXG00000038120	rbm38	70	67.683	Astyanax_mexicanus
MGP_SPRETEiJ_G0025665	Rbm38	100	90.795	ENSBTAG00000008105	RBM38	100	90.795	Bos_taurus
MGP_SPRETEiJ_G0025665	Rbm38	55	79.070	WBGene00006321	sup-12	59	84.270	Caenorhabditis_elegans
MGP_SPRETEiJ_G0025665	Rbm38	100	93.724	ENSCJAG00000019139	RBM38	100	94.215	Callithrix_jacchus
MGP_SPRETEiJ_G0025665	Rbm38	100	91.213	ENSCAFG00020021943	RBM38	100	91.213	Canis_lupus_dingo
MGP_SPRETEiJ_G0025665	Rbm38	100	89.958	ENSCHIG00000002609	RBM38	100	89.958	Capra_hircus
MGP_SPRETEiJ_G0025665	Rbm38	100	93.305	ENSCPOG00000012781	RBM38	100	93.305	Cavia_porcellus
MGP_SPRETEiJ_G0025665	Rbm38	100	93.724	ENSCCAG00000036872	RBM38	100	94.215	Cebus_capucinus
MGP_SPRETEiJ_G0025665	Rbm38	100	93.305	ENSCATG00000032133	RBM38	100	94.215	Cercocebus_atys
MGP_SPRETEiJ_G0025665	Rbm38	95	94.690	ENSCLAG00000005906	RBM38	98	94.690	Chinchilla_lanigera
MGP_SPRETEiJ_G0025665	Rbm38	100	93.305	ENSCSAG00000015503	RBM38	100	93.305	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0025665	Rbm38	91	80.734	ENSCPBG00000024059	RBM38	100	77.523	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0025665	Rbm38	99	71.429	ENSCANG00000030105	-	89	71.429	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0025665	Rbm38	100	96.203	ENSCGRG00001012928	Rbm38	100	96.203	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0025665	Rbm38	83	63.077	ENSCSEG00000020943	rbm38	56	64.881	Cynoglossus_semilaevis
MGP_SPRETEiJ_G0025665	Rbm38	93	68.421	ENSCSEG00000004701	-	96	66.228	Cynoglossus_semilaevis
MGP_SPRETEiJ_G0025665	Rbm38	89	59.052	ENSCVAG00000015952	rbm38	91	59.657	Cyprinodon_variegatus
MGP_SPRETEiJ_G0025665	Rbm38	89	65.948	ENSCVAG00000005472	-	92	64.103	Cyprinodon_variegatus
MGP_SPRETEiJ_G0025665	Rbm38	58	95.556	ENSDARG00000058818	rbm38	92	61.435	Danio_rerio
MGP_SPRETEiJ_G0025665	Rbm38	91	87.963	ENSDNOG00000032004	RBM38	100	84.722	Dasypus_novemcinctus
MGP_SPRETEiJ_G0025665	Rbm38	78	78.689	ENSEBUG00000015164	rbm38	68	81.818	Eptatretus_burgeri
MGP_SPRETEiJ_G0025665	Rbm38	100	89.540	ENSECAG00000007700	RBM38	100	89.540	Equus_caballus
MGP_SPRETEiJ_G0025665	Rbm38	100	88.333	ENSEEUG00000013489	RBM38	100	87.500	Erinaceus_europaeus
MGP_SPRETEiJ_G0025665	Rbm38	92	64.854	ENSELUG00000005849	-	95	63.291	Esox_lucius
MGP_SPRETEiJ_G0025665	Rbm38	63	88.000	ENSELUG00000000585	-	87	64.677	Esox_lucius
MGP_SPRETEiJ_G0025665	Rbm38	100	92.050	ENSFCAG00000042916	RBM38	100	92.562	Felis_catus
MGP_SPRETEiJ_G0025665	Rbm38	75	82.022	ENSFALG00000010805	RBM38	88	81.287	Ficedula_albicollis
MGP_SPRETEiJ_G0025665	Rbm38	89	71.759	ENSFHEG00000006160	-	92	68.837	Fundulus_heteroclitus
MGP_SPRETEiJ_G0025665	Rbm38	89	57.082	ENSFHEG00000017748	rbm38	91	57.082	Fundulus_heteroclitus
MGP_SPRETEiJ_G0025665	Rbm38	58	93.333	ENSGMOG00000016655	-	96	71.271	Gadus_morhua
MGP_SPRETEiJ_G0025665	Rbm38	91	78.899	ENSGALG00000026081	RBM38	100	75.688	Gallus_gallus
MGP_SPRETEiJ_G0025665	Rbm38	89	62.736	ENSGACG00000015224	rbm38	98	63.380	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0025665	Rbm38	91	67.411	ENSGACG00000009873	-	100	63.839	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0025665	Rbm38	91	81.193	ENSGAGG00000001187	RBM38	100	77.982	Gopherus_agassizii
MGP_SPRETEiJ_G0025665	Rbm38	94	67.391	ENSHBUG00000011778	-	97	64.783	Haplochromis_burtoni
MGP_SPRETEiJ_G0025665	Rbm38	100	58.367	ENSHBUG00000012058	rbm38	100	58.367	Haplochromis_burtoni
MGP_SPRETEiJ_G0025665	Rbm38	100	91.213	ENSHGLG00000015077	RBM38	100	91.213	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0025665	Rbm38	56	79.545	ENSHCOG00000019040	rbm38	65	68.212	Hippocampus_comes
MGP_SPRETEiJ_G0025665	Rbm38	71	80.702	ENSHCOG00000005622	-	55	67.857	Hippocampus_comes
MGP_SPRETEiJ_G0025665	Rbm38	100	61.508	ENSIPUG00000019349	-	100	59.524	Ictalurus_punctatus
MGP_SPRETEiJ_G0025665	Rbm38	95	92.105	ENSJJAG00000016299	-	95	92.105	Jaculus_jaculus
MGP_SPRETEiJ_G0025665	Rbm38	89	52.966	ENSKMAG00000012402	rbm38	98	52.966	Kryptolebias_marmoratus
MGP_SPRETEiJ_G0025665	Rbm38	89	58.369	ENSLBEG00000018878	rbm38	91	58.369	Labrus_bergylta
MGP_SPRETEiJ_G0025665	Rbm38	94	66.522	ENSLBEG00000016163	RBM38	92	66.514	Labrus_bergylta
MGP_SPRETEiJ_G0025665	Rbm38	92	71.239	ENSLOCG00000003456	rbm38	95	69.027	Lepisosteus_oculatus
MGP_SPRETEiJ_G0025665	Rbm38	97	93.534	ENSMFAG00000043808	RBM38	97	93.534	Macaca_fascicularis
MGP_SPRETEiJ_G0025665	Rbm38	100	93.305	ENSMMUG00000031391	RBM38	100	94.215	Macaca_mulatta
MGP_SPRETEiJ_G0025665	Rbm38	100	93.305	ENSMNEG00000034683	RBM38	100	94.215	Macaca_nemestrina
MGP_SPRETEiJ_G0025665	Rbm38	56	70.455	ENSMLEG00000043261	-	88	82.569	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0025665	Rbm38	94	62.397	ENSMAMG00000020499	RBM38	97	61.157	Mastacembelus_armatus
MGP_SPRETEiJ_G0025665	Rbm38	89	58.798	ENSMAMG00000024135	rbm38	91	58.798	Mastacembelus_armatus
MGP_SPRETEiJ_G0025665	Rbm38	89	57.082	ENSMZEG00005026036	rbm38	91	57.082	Maylandia_zebra
MGP_SPRETEiJ_G0025665	Rbm38	94	67.391	ENSMZEG00005000849	-	97	64.783	Maylandia_zebra
MGP_SPRETEiJ_G0025665	Rbm38	100	95.781	ENSMAUG00000021211	Rbm38	100	95.781	Mesocricetus_auratus
MGP_SPRETEiJ_G0025665	Rbm38	91	94.907	ENSMICG00000038011	RBM38	100	94.907	Microcebus_murinus
MGP_SPRETEiJ_G0025665	Rbm38	100	95.781	ENSMOCG00000008715	Rbm38	100	95.781	Microtus_ochrogaster
MGP_SPRETEiJ_G0025665	Rbm38	94	67.105	ENSMMOG00000020051	-	96	64.474	Mola_mola
MGP_SPRETEiJ_G0025665	Rbm38	100	77.500	ENSMODG00000016458	RBM38	100	75.000	Monodelphis_domestica
MGP_SPRETEiJ_G0025665	Rbm38	63	79.592	ENSMALG00000022327	rbm38	67	71.613	Monopterus_albus
MGP_SPRETEiJ_G0025665	Rbm38	71	80.702	ENSMALG00000004680	RBM38	72	68.394	Monopterus_albus
MGP_SPRETEiJ_G0025665	Rbm38	100	100.000	MGP_CAROLIEiJ_G0024745	Rbm38	100	100.000	Mus_caroli
MGP_SPRETEiJ_G0025665	Rbm38	100	100.000	ENSMUSG00000027510	Rbm38	100	100.000	Mus_musculus
MGP_SPRETEiJ_G0025665	Rbm38	100	98.734	MGP_PahariEiJ_G0026186	Rbm38	100	98.734	Mus_pahari
MGP_SPRETEiJ_G0025665	Rbm38	78	94.595	ENSMPUG00000006518	RBM38	95	93.194	Mustela_putorius_furo
MGP_SPRETEiJ_G0025665	Rbm38	91	90.741	ENSMLUG00000011140	RBM38	100	90.741	Myotis_lucifugus
MGP_SPRETEiJ_G0025665	Rbm38	97	82.278	ENSNGAG00000014017	-	64	86.486	Nannospalax_galili
MGP_SPRETEiJ_G0025665	Rbm38	94	63.786	ENSNBRG00000022545	-	92	63.203	Neolamprologus_brichardi
MGP_SPRETEiJ_G0025665	Rbm38	100	57.724	ENSNBRG00000022685	rbm38	99	57.724	Neolamprologus_brichardi
MGP_SPRETEiJ_G0025665	Rbm38	90	77.778	ENSMEUG00000005475	-	100	73.188	Notamacropus_eugenii
MGP_SPRETEiJ_G0025665	Rbm38	100	93.305	ENSODEG00000007980	RBM38	100	93.305	Octodon_degus
MGP_SPRETEiJ_G0025665	Rbm38	89	58.190	ENSONIG00000017073	rbm38	93	58.190	Oreochromis_niloticus
MGP_SPRETEiJ_G0025665	Rbm38	93	63.636	ENSONIG00000020324	-	92	63.043	Oreochromis_niloticus
MGP_SPRETEiJ_G0025665	Rbm38	91	79.167	ENSOANG00000009259	RBM38	83	75.926	Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0025665	Rbm38	63	82.000	ENSORLG00000012154	rbm38	91	54.701	Oryzias_latipes
MGP_SPRETEiJ_G0025665	Rbm38	89	63.362	ENSORLG00000027180	-	92	62.069	Oryzias_latipes
MGP_SPRETEiJ_G0025665	Rbm38	63	82.000	ENSORLG00020017871	rbm38	91	55.556	Oryzias_latipes_hni
MGP_SPRETEiJ_G0025665	Rbm38	89	63.362	ENSORLG00020020751	-	92	62.069	Oryzias_latipes_hni
MGP_SPRETEiJ_G0025665	Rbm38	89	62.771	ENSORLG00015017040	-	92	62.931	Oryzias_latipes_hsok
MGP_SPRETEiJ_G0025665	Rbm38	90	58.525	ENSORLG00015012606	rbm38	90	58.525	Oryzias_latipes_hsok
MGP_SPRETEiJ_G0025665	Rbm38	89	55.128	ENSOMEG00000006805	rbm38	91	55.128	Oryzias_melastigma
MGP_SPRETEiJ_G0025665	Rbm38	89	62.771	ENSOMEG00000023912	-	92	61.304	Oryzias_melastigma
MGP_SPRETEiJ_G0025665	Rbm38	100	93.333	ENSOGAG00000029136	RBM38	100	93.333	Otolemur_garnettii
MGP_SPRETEiJ_G0025665	Rbm38	63	97.959	ENSPPAG00000040327	-	85	81.159	Pan_paniscus
MGP_SPRETEiJ_G0025665	Rbm38	100	92.050	ENSPPRG00000009507	RBM38	100	92.562	Panthera_pardus
MGP_SPRETEiJ_G0025665	Rbm38	92	90.541	ENSPTRG00000013661	RBM38	100	94.215	Pan_troglodytes
MGP_SPRETEiJ_G0025665	Rbm38	63	100.000	ENSPTRG00000045845	-	70	96.094	Pan_troglodytes
MGP_SPRETEiJ_G0025665	Rbm38	98	73.418	ENSPANG00000033127	-	99	73.109	Papio_anubis
MGP_SPRETEiJ_G0025665	Rbm38	100	93.305	ENSPANG00000020919	-	100	94.215	Papio_anubis
MGP_SPRETEiJ_G0025665	Rbm38	89	67.273	ENSPKIG00000018122	-	100	88.034	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0025665	Rbm38	96	62.097	ENSPKIG00000025417	rbm38	99	60.081	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0025665	Rbm38	97	77.489	ENSPSIG00000011649	RBM38	97	74.459	Pelodiscus_sinensis
MGP_SPRETEiJ_G0025665	Rbm38	92	60.000	ENSPMGG00000017094	-	94	59.833	Periophthalmus_magnuspinnatus
MGP_SPRETEiJ_G0025665	Rbm38	91	57.143	ENSPMGG00000011343	rbm38	65	69.565	Periophthalmus_magnuspinnatus
MGP_SPRETEiJ_G0025665	Rbm38	100	77.500	ENSPCIG00000013648	RBM38	100	75.000	Phascolarctos_cinereus
MGP_SPRETEiJ_G0025665	Rbm38	58	86.667	ENSPFOG00000011658	rbm38	91	58.120	Poecilia_formosa
MGP_SPRETEiJ_G0025665	Rbm38	89	56.118	ENSPLAG00000005218	rbm38	91	58.120	Poecilia_latipinna
MGP_SPRETEiJ_G0025665	Rbm38	89	66.383	ENSPLAG00000002500	-	92	64.103	Poecilia_latipinna
MGP_SPRETEiJ_G0025665	Rbm38	58	86.667	ENSPMEG00000015770	rbm38	91	58.120	Poecilia_mexicana
MGP_SPRETEiJ_G0025665	Rbm38	89	55.696	ENSPREG00000007398	rbm38	91	58.547	Poecilia_reticulata
MGP_SPRETEiJ_G0025665	Rbm38	100	92.917	ENSPCOG00000026201	RBM38	100	93.443	Propithecus_coquereli
MGP_SPRETEiJ_G0025665	Rbm38	90	88.889	ENSPVAG00000006457	RBM38	100	64.017	Pteropus_vampyrus
MGP_SPRETEiJ_G0025665	Rbm38	89	69.725	ENSPNYG00000019727	-	100	88.034	Pundamilia_nyererei
MGP_SPRETEiJ_G0025665	Rbm38	100	57.202	ENSPNYG00000021373	rbm38	100	55.600	Pundamilia_nyererei
MGP_SPRETEiJ_G0025665	Rbm38	60	91.489	ENSPNAG00000010596	rbm38	88	61.972	Pygocentrus_nattereri
MGP_SPRETEiJ_G0025665	Rbm38	92	66.234	ENSPNAG00000015123	-	96	77.273	Pygocentrus_nattereri
MGP_SPRETEiJ_G0025665	Rbm38	100	97.468	ENSRNOG00000006420	Rbm38	100	97.468	Rattus_norvegicus
MGP_SPRETEiJ_G0025665	Rbm38	100	76.569	ENSRROG00000036388	-	100	76.569	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0025665	Rbm38	91	94.907	ENSSBOG00000031053	RBM38	100	97.196	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0025665	Rbm38	94	64.935	ENSSFOG00015004453	rbm38	92	66.818	Scleropages_formosus
MGP_SPRETEiJ_G0025665	Rbm38	94	63.265	ENSSDUG00000021082	RBM38	92	62.931	Seriola_dumerili
MGP_SPRETEiJ_G0025665	Rbm38	89	59.657	ENSSDUG00000022611	rbm38	91	59.657	Seriola_dumerili
MGP_SPRETEiJ_G0025665	Rbm38	97	60.169	ENSSLDG00000010845	rbm38	97	60.169	Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0025665	Rbm38	94	63.265	ENSSLDG00000011778	RBM38	92	62.931	Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0025665	Rbm38	94	64.889	ENSSPAG00000020989	RBM38	91	65.888	Stegastes_partitus
MGP_SPRETEiJ_G0025665	Rbm38	89	58.369	ENSSPAG00000011113	rbm38	91	58.369	Stegastes_partitus
MGP_SPRETEiJ_G0025665	Rbm38	100	92.469	ENSSSCG00000007504	RBM38	100	92.469	Sus_scrofa
MGP_SPRETEiJ_G0025665	Rbm38	94	63.934	ENSTRUG00000019869	-	92	64.655	Takifugu_rubripes
MGP_SPRETEiJ_G0025665	Rbm38	89	56.332	ENSTRUG00000024954	rbm38	91	55.895	Takifugu_rubripes
MGP_SPRETEiJ_G0025665	Rbm38	89	69.231	ENSTNIG00000007093	-	97	66.968	Tetraodon_nigroviridis
MGP_SPRETEiJ_G0025665	Rbm38	90	74.286	ENSTBEG00000001689	-	64	83.333	Tupaia_belangeri
MGP_SPRETEiJ_G0025665	Rbm38	100	92.469	ENSUAMG00000019780	RBM38	100	92.469	Ursus_americanus
MGP_SPRETEiJ_G0025665	Rbm38	100	91.213	ENSVVUG00000017246	RBM38	100	91.213	Vulpes_vulpes
MGP_SPRETEiJ_G0025665	Rbm38	92	73.778	ENSXETG00000011268	rbm38	100	72.000	Xenopus_tropicalis
MGP_SPRETEiJ_G0025665	Rbm38	59	93.478	ENSXCOG00000017324	-	60	77.444	Xiphophorus_couchianus
MGP_SPRETEiJ_G0025665	Rbm38	89	57.627	ENSXMAG00000023662	rbm38	91	58.369	Xiphophorus_maculatus