EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0025897 (Gene tree)
Gene ID: -
Gene Symbol: Larp1b
Alias: 1700108L22Rik|4933421B21Rik|Larp2
Full Name: La ribonucleoprotein domain family%2C member 1B
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Plus strand
Length: 96127 bases
Position: chr3:37977103-38073229
Accession: 1914604
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0059758	La	PF05383.17	2.4e-22	1	1
MGP_SPRETEiJ_P0059762	La	PF05383.17	2.4e-22	1	1
MGP_SPRETEiJ_P0059759	La	PF05383.17	5.5e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0059771	-	158	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0059770	-	1499	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0059759	-	1504	-	MGP_SPRETEiJ_P0059759	288 (aa)	-	UPI00005B1F65
MGP_SPRETEiJ_T0059758	-	2354	-	MGP_SPRETEiJ_P0059758	335 (aa)	-	UPI00000282D5
MGP_SPRETEiJ_T0059768	-	1732	-	MGP_SPRETEiJ_P0059768	248 (aa)	-	-
MGP_SPRETEiJ_T0059769	-	324	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0059766	-	4075	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0059767	-	1585	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0059764	-	614	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0059765	-	1938	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0059762	-	1581	-	MGP_SPRETEiJ_P0059762	335 (aa)	-	UPI00000282D5
MGP_SPRETEiJ_T0059763	-	1596	-	MGP_SPRETEiJ_P0059763	369 (aa)	-	-
MGP_SPRETEiJ_T0059760	-	374	-	MGP_SPRETEiJ_P0059760	14 (aa)	-	UPI000620A999
MGP_SPRETEiJ_T0059761	-	103	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0025897's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0025897's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0025897	Larp1b	100	88.657	ENSG00000138709	LARP1B	100	88.657	Homo_sapiens
MGP_SPRETEiJ_G0025897	Larp1b	100	90.746	ENSAMEG00000002748	LARP1B	100	90.746	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0025897	Larp1b	99	77.644	ENSANAG00000034618	LARP1B	96	77.644	Aotus_nancymaae
MGP_SPRETEiJ_G0025897	Larp1b	98	88.182	ENSBTAG00000012135	LARP1B	64	87.278	Bos_taurus
MGP_SPRETEiJ_G0025897	Larp1b	100	90.746	ENSCJAG00000003338	LARP1B	100	90.746	Callithrix_jacchus
MGP_SPRETEiJ_G0025897	Larp1b	100	90.972	ENSCAFG00020018899	LARP1B	100	90.972	Canis_lupus_dingo
MGP_SPRETEiJ_G0025897	Larp1b	100	88.581	ENSCHIG00000023144	LARP1B	100	88.581	Capra_hircus
MGP_SPRETEiJ_G0025897	Larp1b	99	86.411	ENSTSYG00000002037	-	99	86.411	Carlito_syrichta
MGP_SPRETEiJ_G0025897	Larp1b	76	93.750	ENSCPOG00000034668	-	93	93.750	Cavia_porcellus
MGP_SPRETEiJ_G0025897	Larp1b	99	90.120	ENSCCAG00000021948	LARP1B	99	90.120	Cebus_capucinus
MGP_SPRETEiJ_G0025897	Larp1b	100	86.269	ENSCATG00000013541	LARP1B	100	86.269	Cercocebus_atys
MGP_SPRETEiJ_G0025897	Larp1b	100	86.111	ENSCLAG00000006448	-	100	86.111	Chinchilla_lanigera
MGP_SPRETEiJ_G0025897	Larp1b	100	89.583	ENSCANG00000026958	LARP1B	100	89.583	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0025897	Larp1b	100	96.418	ENSCGRG00001004660	-	100	96.418	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0025897	Larp1b	100	96.119	ENSCGRG00000001914	-	100	96.119	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0025897	Larp1b	98	88.754	ENSDNOG00000018765	-	66	86.944	Dasypus_novemcinctus
MGP_SPRETEiJ_G0025897	Larp1b	99	90.941	ENSEASG00005018106	LARP1B	99	90.941	Equus_asinus_asinus
MGP_SPRETEiJ_G0025897	Larp1b	100	90.448	ENSFCAG00000014650	-	100	90.448	Felis_catus
MGP_SPRETEiJ_G0025897	Larp1b	100	88.657	ENSGGOG00000015900	LARP1B	100	88.657	Gorilla_gorilla
MGP_SPRETEiJ_G0025897	Larp1b	98	73.252	ENSHGLG00000013922	-	96	71.733	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0025897	Larp1b	100	85.274	ENSHGLG00000006728	-	99	85.616	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0025897	Larp1b	98	73.252	ENSHGLG00100016491	-	96	71.733	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0025897	Larp1b	100	86.111	ENSHGLG00100014041	-	95	86.111	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0025897	Larp1b	96	71.651	ENSSTOG00000034510	-	87	71.651	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0025897	Larp1b	90	74.903	ENSSTOG00000033183	-	96	74.400	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0025897	Larp1b	100	89.619	ENSSTOG00000008596	-	100	89.619	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0025897	Larp1b	99	81.269	ENSSTOG00000021917	-	94	80.665	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0025897	Larp1b	99	90.592	ENSJJAG00000022360	Larp1b	99	90.592	Jaculus_jaculus
MGP_SPRETEiJ_G0025897	Larp1b	98	70.997	ENSLACG00000015247	LARP1B	85	69.277	Latimeria_chalumnae
MGP_SPRETEiJ_G0025897	Larp1b	99	91.667	ENSLAFG00000008473	-	99	91.667	Loxodonta_africana
MGP_SPRETEiJ_G0025897	Larp1b	100	64.931	ENSMFAG00000003306	-	94	86.486	Macaca_fascicularis
MGP_SPRETEiJ_G0025897	Larp1b	100	89.851	ENSMFAG00000002218	LARP1B	100	89.851	Macaca_fascicularis
MGP_SPRETEiJ_G0025897	Larp1b	100	89.851	ENSMMUG00000021347	LARP1B	100	89.851	Macaca_mulatta
MGP_SPRETEiJ_G0025897	Larp1b	75	88.112	ENSMNEG00000027747	-	89	88.112	Macaca_nemestrina
MGP_SPRETEiJ_G0025897	Larp1b	84	55.785	ENSMZEG00005002545	larp1b	55	54.152	Maylandia_zebra
MGP_SPRETEiJ_G0025897	Larp1b	100	95.821	ENSMAUG00000007879	-	100	95.821	Mesocricetus_auratus
MGP_SPRETEiJ_G0025897	Larp1b	100	91.940	ENSMICG00000036111	LARP1B	100	91.940	Microcebus_murinus
MGP_SPRETEiJ_G0025897	Larp1b	98	81.818	ENSMICG00000037883	-	88	81.818	Microcebus_murinus
MGP_SPRETEiJ_G0025897	Larp1b	97	68.405	ENSMICG00000028052	-	65	68.249	Microcebus_murinus
MGP_SPRETEiJ_G0025897	Larp1b	79	96.958	ENSMOCG00000001490	Larp1b	95	96.958	Microtus_ochrogaster
MGP_SPRETEiJ_G0025897	Larp1b	100	98.507	MGP_CAROLIEiJ_G0024962	Larp1b	100	98.507	Mus_caroli
MGP_SPRETEiJ_G0025897	Larp1b	100	100.000	ENSMUSG00000025762	Larp1b	100	100.000	Mus_musculus
MGP_SPRETEiJ_G0025897	Larp1b	100	97.910	MGP_PahariEiJ_G0026403	Larp1b	100	97.910	Mus_pahari
MGP_SPRETEiJ_G0025897	Larp1b	100	88.955	ENSNLEG00000013819	LARP1B	100	88.955	Nomascus_leucogenys
MGP_SPRETEiJ_G0025897	Larp1b	100	86.111	ENSODEG00000001292	-	100	86.111	Octodon_degus
MGP_SPRETEiJ_G0025897	Larp1b	100	88.358	ENSPPAG00000030439	LARP1B	100	88.358	Pan_paniscus
MGP_SPRETEiJ_G0025897	Larp1b	100	90.448	ENSPPRG00000002743	-	100	90.448	Panthera_pardus
MGP_SPRETEiJ_G0025897	Larp1b	100	90.448	ENSPTIG00000011225	LARP1B	100	90.448	Panthera_tigris_altaica
MGP_SPRETEiJ_G0025897	Larp1b	100	88.657	ENSPTRG00000016437	LARP1B	100	88.657	Pan_troglodytes
MGP_SPRETEiJ_G0025897	Larp1b	100	89.552	ENSPANG00000012488	LARP1B	100	89.552	Papio_anubis
MGP_SPRETEiJ_G0025897	Larp1b	99	84.179	ENSPCIG00000026516	LARP1B	87	84.848	Phascolarctos_cinereus
MGP_SPRETEiJ_G0025897	Larp1b	99	51.499	ENSPFOG00000022837	-	52	51.226	Poecilia_formosa
MGP_SPRETEiJ_G0025897	Larp1b	79	60.088	ENSPREG00000005955	-	95	50.779	Poecilia_reticulata
MGP_SPRETEiJ_G0025897	Larp1b	100	91.343	ENSPCOG00000021874	LARP1B	100	91.343	Propithecus_coquereli
MGP_SPRETEiJ_G0025897	Larp1b	100	97.313	ENSRNOG00000038366	Larp1b	100	97.313	Rattus_norvegicus
MGP_SPRETEiJ_G0025897	Larp1b	100	80.597	ENSRBIG00000038568	-	92	80.597	Rhinopithecus_bieti
MGP_SPRETEiJ_G0025897	Larp1b	100	87.463	ENSRBIG00000039982	-	100	86.269	Rhinopithecus_bieti
MGP_SPRETEiJ_G0025897	Larp1b	100	89.851	ENSRROG00000030771	LARP1B	100	89.851	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0025897	Larp1b	100	82.007	ENSRROG00000038525	-	96	82.007	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0025897	Larp1b	98	86.364	ENSSHAG00000014474	LARP1B	51	85.841	Sarcophilus_harrisii
MGP_SPRETEiJ_G0025897	Larp1b	98	88.754	ENSSSCG00000034280	LARP1B	64	88.131	Sus_scrofa
MGP_SPRETEiJ_G0025897	Larp1b	99	54.704	ENSSSCG00000040491	-	99	55.749	Sus_scrofa
MGP_SPRETEiJ_G0025897	Larp1b	100	80.896	ENSUAMG00000016938	-	91	94.083	Ursus_americanus
MGP_SPRETEiJ_G0025897	Larp1b	98	89.970	ENSVVUG00000011307	LARP1B	65	89.970	Vulpes_vulpes