EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0025903 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc4l
Alias: C330050A14Rik|EG241989
Full Name: poly(A) binding protein%2C cytoplasmic 4-like
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Minus strand
Length: 6932 bases
Position: chr3:43829381-43836312
Accession: 3643087
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0059815	RRM_5	PF13893.6	2.2e-13	1	3
MGP_SPRETEiJ_P0059815	RRM_5	PF13893.6	2.2e-13	2	3
MGP_SPRETEiJ_P0059815	RRM_5	PF13893.6	2.2e-13	3	3
MGP_SPRETEiJ_P0059816	RRM_5	PF13893.6	2.2e-13	1	3
MGP_SPRETEiJ_P0059816	RRM_5	PF13893.6	2.2e-13	2	3
MGP_SPRETEiJ_P0059816	RRM_5	PF13893.6	2.2e-13	3	3
MGP_SPRETEiJ_P0059815	RRM_1	PF00076.22	2.3e-82	1	4
MGP_SPRETEiJ_P0059815	RRM_1	PF00076.22	2.3e-82	2	4
MGP_SPRETEiJ_P0059815	RRM_1	PF00076.22	2.3e-82	3	4
MGP_SPRETEiJ_P0059815	RRM_1	PF00076.22	2.3e-82	4	4
MGP_SPRETEiJ_P0059816	RRM_1	PF00076.22	2.3e-82	1	4
MGP_SPRETEiJ_P0059816	RRM_1	PF00076.22	2.3e-82	2	4
MGP_SPRETEiJ_P0059816	RRM_1	PF00076.22	2.3e-82	3	4
MGP_SPRETEiJ_P0059816	RRM_1	PF00076.22	2.3e-82	4	4
MGP_SPRETEiJ_P0059817	RRM_1	PF00076.22	1.1e-40	1	2
MGP_SPRETEiJ_P0059817	RRM_1	PF00076.22	1.1e-40	2	2
MGP_SPRETEiJ_P0059818	RRM_1	PF00076.22	2e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0059818	-	464	-	MGP_SPRETEiJ_P0059818	50 (aa)	-	UPI00053BD8B1
MGP_SPRETEiJ_T0059815	-	5185	-	MGP_SPRETEiJ_P0059815	370 (aa)	-	-
MGP_SPRETEiJ_T0059816	-	5221	-	MGP_SPRETEiJ_P0059816	370 (aa)	-	-
MGP_SPRETEiJ_T0059817	-	721	-	MGP_SPRETEiJ_P0059817	172 (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0025903's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0025903's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_SPRETEiJ_G0025903	Pabpc4l	89	32.500	MGP_SPRETEiJ_G0027544	Trnau1ap	88	34.211
MGP_SPRETEiJ_G0025903	Pabpc4l	95	31.138	MGP_SPRETEiJ_G0029606	Tia1	95	30.769
MGP_SPRETEiJ_G0025903	Pabpc4l	83	35.714	MGP_SPRETEiJ_G0034063	Rbm3	87	36.923
MGP_SPRETEiJ_G0025903	Pabpc4l	97	57.303	MGP_SPRETEiJ_G0034533	Pabpc5	96	57.418
MGP_SPRETEiJ_G0025903	Pabpc4l	96	38.068	MGP_SPRETEiJ_G0026309	Sf3b4	54	38.068
MGP_SPRETEiJ_G0025903	Pabpc4l	98	69.939	MGP_SPRETEiJ_G0027415	Pabpc4	100	68.841
MGP_SPRETEiJ_G0025903	Pabpc4l	95	60.123	MGP_SPRETEiJ_G0025549	Pabpc1l	59	60.123
MGP_SPRETEiJ_G0025903	Pabpc4l	96	36.145	MGP_SPRETEiJ_G0027124	Elavl2	89	36.145
MGP_SPRETEiJ_G0025903	Pabpc4l	97	68.675	MGP_SPRETEiJ_G0020636	Pabpc1	59	66.942
MGP_SPRETEiJ_G0025903	Pabpc4l	52	31.461	MGP_SPRETEiJ_G0027625	-	50	32.500
MGP_SPRETEiJ_G0025903	Pabpc4l	65	33.333	MGP_SPRETEiJ_G0024859	Celf1	61	33.628
MGP_SPRETEiJ_G0025903	Pabpc4l	94	33.939	MGP_SPRETEiJ_G0031662	Tial1	99	32.353
MGP_SPRETEiJ_G0025903	Pabpc4l	97	30.719	MGP_SPRETEiJ_G0027258	Elavl4	69	31.915
MGP_SPRETEiJ_G0025903	Pabpc4l	95	67.485	MGP_SPRETEiJ_G0023126	Pabpc2	57	67.485
MGP_SPRETEiJ_G0025903	Pabpc4l	98	65.089	MGP_SPRETEiJ_G0021962	Pabpc6	58	65.089

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0025903	Pabpc4l	100	80.811	ENSG00000254535	PABPC4L	100	80.811	Homo_sapiens
MGP_SPRETEiJ_G0025903	Pabpc4l	100	82.000	ENSANAG00000017199	PABPC4L	87	80.000	Aotus_nancymaae
MGP_SPRETEiJ_G0025903	Pabpc4l	100	78.000	ENSBTAG00000046902	PABPC4L	99	78.862	Bos_taurus
MGP_SPRETEiJ_G0025903	Pabpc4l	100	80.541	ENSCJAG00000045332	PABPC4L	86	80.541	Callithrix_jacchus
MGP_SPRETEiJ_G0025903	Pabpc4l	100	74.000	ENSCAFG00020019182	-	55	69.767	Canis_lupus_dingo
MGP_SPRETEiJ_G0025903	Pabpc4l	100	78.000	ENSCHIG00000007231	PABPC4L	99	78.862	Capra_hircus
MGP_SPRETEiJ_G0025903	Pabpc4l	98	72.239	ENSCAPG00000000555	PABPC4L	100	72.239	Cavia_aperea
MGP_SPRETEiJ_G0025903	Pabpc4l	100	69.459	ENSCPOG00000033167	PABPC4L	100	69.459	Cavia_porcellus
MGP_SPRETEiJ_G0025903	Pabpc4l	100	80.270	ENSCCAG00000031681	PABPC4L	86	80.270	Cebus_capucinus
MGP_SPRETEiJ_G0025903	Pabpc4l	94	82.979	ENSCLAG00000017628	PABPC4L	100	76.216	Chinchilla_lanigera
MGP_SPRETEiJ_G0025903	Pabpc4l	100	82.000	ENSCANG00000037677	PABPC4L	99	80.814	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0025903	Pabpc4l	100	92.000	ENSCGRG00001002070	Pabpc4l	100	87.568	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0025903	Pabpc4l	100	92.000	ENSCGRG00000020086	Pabpc4l	100	87.568	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0025903	Pabpc4l	100	78.919	ENSDNOG00000031077	PABPC4L	95	78.919	Dasypus_novemcinctus
MGP_SPRETEiJ_G0025903	Pabpc4l	100	80.000	ENSEASG00005007883	PABPC4L	99	79.070	Equus_asinus_asinus
MGP_SPRETEiJ_G0025903	Pabpc4l	100	80.000	ENSECAG00000031416	PABPC4L	99	79.070	Equus_caballus
MGP_SPRETEiJ_G0025903	Pabpc4l	100	80.000	ENSFCAG00000028270	PABPC4L	99	78.049	Felis_catus
MGP_SPRETEiJ_G0025903	Pabpc4l	100	72.674	ENSFDAG00000019606	PABPC4L	99	72.674	Fukomys_damarensis
MGP_SPRETEiJ_G0025903	Pabpc4l	100	80.270	ENSGGOG00000024991	PABPC4L	100	80.270	Gorilla_gorilla
MGP_SPRETEiJ_G0025903	Pabpc4l	99	75.339	ENSHGLG00000020104	PABPC4L	99	75.339	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0025903	Pabpc4l	99	75.339	ENSHGLG00100020648	PABPC4L	99	75.339	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0025903	Pabpc4l	100	79.515	ENSSTOG00000019472	PABPC4L	99	79.515	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0025903	Pabpc4l	100	84.000	ENSJJAG00000004090	Pabpc4l	99	77.326	Jaculus_jaculus
MGP_SPRETEiJ_G0025903	Pabpc4l	100	92.000	ENSMAUG00000016313	Pabpc4l	100	87.838	Mesocricetus_auratus
MGP_SPRETEiJ_G0025903	Pabpc4l	100	79.730	ENSMICG00000029683	PABPC4L	100	79.730	Microcebus_murinus
MGP_SPRETEiJ_G0025903	Pabpc4l	100	90.000	ENSMOCG00000007551	Pabpc4l	100	88.919	Microtus_ochrogaster
MGP_SPRETEiJ_G0025903	Pabpc4l	100	98.108	MGP_CAROLIEiJ_G0024968	Pabpc4l	100	98.108	Mus_caroli
MGP_SPRETEiJ_G0025903	Pabpc4l	100	100.000	ENSMUSG00000090919	Pabpc4l	100	100.000	Mus_musculus
MGP_SPRETEiJ_G0025903	Pabpc4l	100	98.108	MGP_PahariEiJ_G0026409	Pabpc4l	100	98.108	Mus_pahari
MGP_SPRETEiJ_G0025903	Pabpc4l	100	75.000	ENSMLUG00000008254	PABPC4L	99	75.000	Myotis_lucifugus
MGP_SPRETEiJ_G0025903	Pabpc4l	100	86.000	ENSNGAG00000001502	Pabpc4l	100	84.865	Nannospalax_galili
MGP_SPRETEiJ_G0025903	Pabpc4l	100	80.541	ENSNLEG00000019300	PABPC4L	100	80.541	Nomascus_leucogenys
MGP_SPRETEiJ_G0025903	Pabpc4l	100	78.000	ENSOGAG00000026166	PABPC4L	100	74.324	Otolemur_garnettii
MGP_SPRETEiJ_G0025903	Pabpc4l	100	80.233	ENSPPAG00000043745	PABPC4L	93	80.233	Pan_paniscus
MGP_SPRETEiJ_G0025903	Pabpc4l	100	80.000	ENSPPRG00000018628	PABPC4L	99	77.778	Panthera_pardus
MGP_SPRETEiJ_G0025903	Pabpc4l	100	80.000	ENSPTIG00000010106	PABPC4L	99	78.049	Panthera_tigris_altaica
MGP_SPRETEiJ_G0025903	Pabpc4l	100	80.233	ENSPTRG00000045513	-	78	80.186	Pan_troglodytes
MGP_SPRETEiJ_G0025903	Pabpc4l	100	90.000	ENSPEMG00000012565	Pabpc4l	100	88.649	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0025903	Pabpc4l	100	80.270	ENSPCOG00000025578	PABPC4L	100	80.270	Propithecus_coquereli
MGP_SPRETEiJ_G0025903	Pabpc4l	100	92.973	ENSRNOG00000029749	Pabpc4l	100	92.973	Rattus_norvegicus
MGP_SPRETEiJ_G0025903	Pabpc4l	100	80.233	ENSRBIG00000030229	PABPC4L	99	80.233	Rhinopithecus_bieti
MGP_SPRETEiJ_G0025903	Pabpc4l	100	80.233	ENSRROG00000020367	PABPC4L	99	80.233	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0025903	Pabpc4l	100	80.000	ENSSBOG00000016382	PABPC4L	100	80.000	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0025903	Pabpc4l	100	80.000	ENSSSCG00000009067	PABPC4L	99	72.900	Sus_scrofa
MGP_SPRETEiJ_G0025903	Pabpc4l	100	78.000	ENSUAMG00000001289	PABPC4L	99	77.778	Ursus_americanus
MGP_SPRETEiJ_G0025903	Pabpc4l	100	78.000	ENSUMAG00000014887	PABPC4L	99	77.778	Ursus_maritimus
MGP_SPRETEiJ_G0025903	Pabpc4l	100	72.000	ENSVVUG00000011060	-	75	67.683	Vulpes_vulpes