EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0025994 (Gene tree)
Gene ID: -
Gene Symbol: Gfm1
Alias: D3Wsu133e
Full Name: G elongation factor%2C mitochondrial 1
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Plus strand
Length: 51227 bases
Position: chr3:64995138-65046364
Accession: 107339
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0060240	GTP_EFTU	PF00009.27	2.1e-63	1	1
MGP_SPRETEiJ_P0060240	GTP_EFTU_D2	PF03144.25	8.7e-17	1	1
MGP_SPRETEiJ_P0060240	EFG_IV	PF03764.18	1.7e-33	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0060241	-	1965	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0060240	-	4072	-	MGP_SPRETEiJ_P0060240	751 (aa)	-	UPI00000280FD
MGP_SPRETEiJ_T0060243	-	924	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0060242	-	1605	-	MGP_SPRETEiJ_P0060242	534 (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0025994's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0025994's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_SPRETEiJ_G0025994	Gfm1	92	37.262	MGP_SPRETEiJ_G0019696	Gfm2	91	35.061
MGP_SPRETEiJ_G0025994	Gfm1	70	32.692	MGP_SPRETEiJ_G0028269	Guf1	68	32.692
MGP_SPRETEiJ_G0025994	Gfm1	73	38.926	MGP_SPRETEiJ_G0016440	Eef2	73	38.926

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0025994	Gfm1	98	91.304	ENSG00000168827	GFM1	100	98.333	Homo_sapiens
MGP_SPRETEiJ_G0025994	Gfm1	94	82.200	ENSAPOG00000016489	gfm1	96	79.491	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0025994	Gfm1	98	92.016	ENSAMEG00000013542	GFM1	100	91.645	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0025994	Gfm1	95	76.602	ENSACIG00000014465	gfm1	93	76.602	Amphilophus_citrinellus
MGP_SPRETEiJ_G0025994	Gfm1	94	81.800	ENSAOCG00000006023	gfm1	95	80.618	Amphiprion_ocellaris
MGP_SPRETEiJ_G0025994	Gfm1	94	81.800	ENSAPEG00000024499	gfm1	98	80.337	Amphiprion_percula
MGP_SPRETEiJ_G0025994	Gfm1	100	78.296	ENSATEG00000013789	gfm1	100	78.296	Anabas_testudineus
MGP_SPRETEiJ_G0025994	Gfm1	95	83.287	ENSAPLG00000005022	GFM1	99	83.287	Anas_platyrhynchos
MGP_SPRETEiJ_G0025994	Gfm1	95	84.872	ENSACAG00000006829	GFM1	98	82.782	Anolis_carolinensis
MGP_SPRETEiJ_G0025994	Gfm1	100	90.716	ENSANAG00000035983	GFM1	100	90.716	Aotus_nancymaae
MGP_SPRETEiJ_G0025994	Gfm1	95	82.287	ENSACLG00000016586	gfm1	98	80.972	Astatotilapia_calliptera
MGP_SPRETEiJ_G0025994	Gfm1	100	79.095	ENSAMXG00000013435	gfm1	98	80.081	Astyanax_mexicanus
MGP_SPRETEiJ_G0025994	Gfm1	100	93.227	ENSBTAG00000027795	GFM1	100	93.227	Bos_taurus
MGP_SPRETEiJ_G0025994	Gfm1	97	59.659	WBGene00009246	gfm-1	99	55.020	Caenorhabditis_elegans
MGP_SPRETEiJ_G0025994	Gfm1	100	91.114	ENSCJAG00000000363	GFM1	100	91.114	Callithrix_jacchus
MGP_SPRETEiJ_G0025994	Gfm1	98	92.809	ENSCAFG00000009006	GFM1	100	94.083	Canis_familiaris
MGP_SPRETEiJ_G0025994	Gfm1	98	92.963	ENSCAFG00020005878	GFM1	99	93.785	Canis_lupus_dingo
MGP_SPRETEiJ_G0025994	Gfm1	100	93.360	ENSCHIG00000015220	GFM1	100	93.360	Capra_hircus
MGP_SPRETEiJ_G0025994	Gfm1	100	91.766	ENSTSYG00000002013	GFM1	100	91.766	Carlito_syrichta
MGP_SPRETEiJ_G0025994	Gfm1	98	79.919	ENSCAPG00000005699	GFM1	99	79.919	Cavia_aperea
MGP_SPRETEiJ_G0025994	Gfm1	100	90.981	ENSCPOG00000001194	GFM1	100	90.981	Cavia_porcellus
MGP_SPRETEiJ_G0025994	Gfm1	100	91.114	ENSCCAG00000025561	GFM1	100	91.114	Cebus_capucinus
MGP_SPRETEiJ_G0025994	Gfm1	100	90.849	ENSCATG00000037622	GFM1	100	90.849	Cercocebus_atys
MGP_SPRETEiJ_G0025994	Gfm1	98	91.081	ENSCLAG00000002503	GFM1	99	90.629	Chinchilla_lanigera
MGP_SPRETEiJ_G0025994	Gfm1	100	90.716	ENSCSAG00000012162	GFM1	100	90.716	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0025994	Gfm1	100	83.289	ENSCHOG00000004867	GFM1	100	83.289	Choloepus_hoffmanni
MGP_SPRETEiJ_G0025994	Gfm1	100	82.290	ENSCPBG00000018367	GFM1	99	82.290	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0025994	Gfm1	95	59.336	ENSCING00000011960	-	94	59.336	Ciona_intestinalis
MGP_SPRETEiJ_G0025994	Gfm1	95	60.333	ENSCSAVG00000008514	-	99	60.333	Ciona_savignyi
MGP_SPRETEiJ_G0025994	Gfm1	98	91.712	ENSCANG00000031714	GFM1	100	90.981	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0025994	Gfm1	100	95.073	ENSCGRG00001022095	GFM1	100	95.073	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0025994	Gfm1	100	95.073	ENSCGRG00000012043	GFM1	100	95.073	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0025994	Gfm1	95	76.290	ENSCSEG00000017088	gfm1	98	76.290	Cynoglossus_semilaevis
MGP_SPRETEiJ_G0025994	Gfm1	100	79.588	ENSCVAG00000004126	gfm1	99	81.690	Cyprinodon_variegatus
MGP_SPRETEiJ_G0025994	Gfm1	100	77.364	ENSDARG00000063624	gfm1	100	77.364	Danio_rerio
MGP_SPRETEiJ_G0025994	Gfm1	54	89.242	ENSDNOG00000016385	-	100	89.242	Dasypus_novemcinctus
MGP_SPRETEiJ_G0025994	Gfm1	100	89.362	ENSDORG00000014165	Gfm1	100	89.362	Dipodomys_ordii
MGP_SPRETEiJ_G0025994	Gfm1	92	71.224	FBgn0263133	mEFG1	95	67.560	Drosophila_melanogaster
MGP_SPRETEiJ_G0025994	Gfm1	98	82.186	ENSETEG00000019197	GFM1	100	81.878	Echinops_telfairi
MGP_SPRETEiJ_G0025994	Gfm1	90	67.259	ENSEBUG00000012794	gfm1	99	67.259	Eptatretus_burgeri
MGP_SPRETEiJ_G0025994	Gfm1	95	72.244	ENSEEUG00000000429	GFM1	99	68.414	Erinaceus_europaeus
MGP_SPRETEiJ_G0025994	Gfm1	100	77.364	ENSELUG00000014728	gfm1	100	77.364	Esox_lucius
MGP_SPRETEiJ_G0025994	Gfm1	98	92.963	ENSFCAG00000013291	GFM1	100	92.706	Felis_catus
MGP_SPRETEiJ_G0025994	Gfm1	90	83.407	ENSFALG00000007619	GFM1	100	83.407	Ficedula_albicollis
MGP_SPRETEiJ_G0025994	Gfm1	100	90.053	ENSFDAG00000016559	GFM1	100	90.053	Fukomys_damarensis
MGP_SPRETEiJ_G0025994	Gfm1	100	79.095	ENSFHEG00000006091	gfm1	100	79.095	Fundulus_heteroclitus
MGP_SPRETEiJ_G0025994	Gfm1	95	78.779	ENSGMOG00000010161	gfm1	99	78.779	Gadus_morhua
MGP_SPRETEiJ_G0025994	Gfm1	98	81.471	ENSGALG00000009634	GFM1	99	81.471	Gallus_gallus
MGP_SPRETEiJ_G0025994	Gfm1	100	79.963	ENSGAFG00000012527	gfm1	100	79.627	Gambusia_affinis
MGP_SPRETEiJ_G0025994	Gfm1	99	77.660	ENSGACG00000009864	gfm1	99	77.660	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0025994	Gfm1	51	68.000	ENSGAGG00000002769	-	90	90.355	Gopherus_agassizii
MGP_SPRETEiJ_G0025994	Gfm1	98	91.576	ENSGGOG00000003085	GFM1	100	90.849	Gorilla_gorilla
MGP_SPRETEiJ_G0025994	Gfm1	95	82.287	ENSHBUG00000002120	gfm1	96	82.287	Haplochromis_burtoni
MGP_SPRETEiJ_G0025994	Gfm1	98	91.204	ENSHGLG00000016855	GFM1	100	90.318	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0025994	Gfm1	98	91.204	ENSHGLG00100013049	GFM1	100	90.318	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0025994	Gfm1	95	80.899	ENSHCOG00000007638	gfm1	97	80.874	Hippocampus_comes
MGP_SPRETEiJ_G0025994	Gfm1	97	79.862	ENSIPUG00000005873	gfm1	100	78.029	Ictalurus_punctatus
MGP_SPRETEiJ_G0025994	Gfm1	100	89.628	ENSSTOG00000010150	GFM1	100	89.628	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0025994	Gfm1	100	91.611	ENSJJAG00000016447	Gfm1	100	91.611	Jaculus_jaculus
MGP_SPRETEiJ_G0025994	Gfm1	100	77.364	ENSKMAG00000020768	gfm1	100	77.364	Kryptolebias_marmoratus
MGP_SPRETEiJ_G0025994	Gfm1	99	78.612	ENSLBEG00000021315	gfm1	100	80.884	Labrus_bergylta
MGP_SPRETEiJ_G0025994	Gfm1	100	79.494	ENSLACG00000012295	GFM1	100	79.494	Latimeria_chalumnae
MGP_SPRETEiJ_G0025994	Gfm1	95	76.741	ENSLOCG00000003778	gfm1	99	76.741	Lepisosteus_oculatus
MGP_SPRETEiJ_G0025994	Gfm1	99	88.727	ENSLAFG00000010945	GFM1	100	88.828	Loxodonta_africana
MGP_SPRETEiJ_G0025994	Gfm1	100	91.114	ENSMFAG00000035731	GFM1	100	91.114	Macaca_fascicularis
MGP_SPRETEiJ_G0025994	Gfm1	100	91.247	ENSMMUG00000004961	GFM1	100	91.247	Macaca_mulatta
MGP_SPRETEiJ_G0025994	Gfm1	100	90.981	ENSMNEG00000033245	GFM1	100	90.981	Macaca_nemestrina
MGP_SPRETEiJ_G0025994	Gfm1	96	90.207	ENSMLEG00000030908	GFM1	100	89.771	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0025994	Gfm1	95	81.729	ENSMAMG00000011760	gfm1	96	81.729	Mastacembelus_armatus
MGP_SPRETEiJ_G0025994	Gfm1	95	82.287	ENSMZEG00005016639	gfm1	96	82.287	Maylandia_zebra
MGP_SPRETEiJ_G0025994	Gfm1	95	82.706	ENSMGAG00000010641	GFM1	96	82.706	Meleagris_gallopavo
MGP_SPRETEiJ_G0025994	Gfm1	100	94.940	ENSMAUG00000000611	Gfm1	100	94.940	Mesocricetus_auratus
MGP_SPRETEiJ_G0025994	Gfm1	98	92.527	ENSMICG00000049086	GFM1	100	91.645	Microcebus_murinus
MGP_SPRETEiJ_G0025994	Gfm1	100	95.206	ENSMOCG00000000465	Gfm1	100	95.206	Microtus_ochrogaster
MGP_SPRETEiJ_G0025994	Gfm1	95	80.335	ENSMMOG00000012538	gfm1	97	80.335	Mola_mola
MGP_SPRETEiJ_G0025994	Gfm1	100	85.087	ENSMODG00000015673	GFM1	100	85.087	Monodelphis_domestica
MGP_SPRETEiJ_G0025994	Gfm1	95	81.032	ENSMALG00000012508	gfm1	95	81.032	Monopterus_albus
MGP_SPRETEiJ_G0025994	Gfm1	100	99.438	MGP_CAROLIEiJ_G0025052	Gfm1	100	99.438	Mus_caroli
MGP_SPRETEiJ_G0025994	Gfm1	100	100.000	ENSMUSG00000027774	Gfm1	100	100.000	Mus_musculus
MGP_SPRETEiJ_G0025994	Gfm1	100	98.689	MGP_PahariEiJ_G0026495	Gfm1	100	98.689	Mus_pahari
MGP_SPRETEiJ_G0025994	Gfm1	100	91.512	ENSMPUG00000002859	GFM1	100	91.512	Mustela_putorius_furo
MGP_SPRETEiJ_G0025994	Gfm1	100	92.042	ENSMLUG00000000452	GFM1	100	92.042	Myotis_lucifugus
MGP_SPRETEiJ_G0025994	Gfm1	100	93.209	ENSNGAG00000012375	Gfm1	100	93.209	Nannospalax_galili
MGP_SPRETEiJ_G0025994	Gfm1	95	82.008	ENSNBRG00000004631	gfm1	98	82.008	Neolamprologus_brichardi
MGP_SPRETEiJ_G0025994	Gfm1	98	91.712	ENSNLEG00000004176	GFM1	100	90.981	Nomascus_leucogenys
MGP_SPRETEiJ_G0025994	Gfm1	95	79.406	ENSMEUG00000007784	GFM1	99	78.770	Notamacropus_eugenii
MGP_SPRETEiJ_G0025994	Gfm1	100	89.096	ENSOPRG00000009860	GFM1	100	89.096	Ochotona_princeps
MGP_SPRETEiJ_G0025994	Gfm1	98	91.762	ENSODEG00000004316	GFM1	100	90.981	Octodon_degus
MGP_SPRETEiJ_G0025994	Gfm1	95	82.287	ENSONIG00000003772	gfm1	96	82.287	Oreochromis_niloticus
MGP_SPRETEiJ_G0025994	Gfm1	98	93.369	ENSOCUG00000013561	GFM1	100	92.838	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0025994	Gfm1	94	81.780	ENSORLG00000006487	gfm1	100	81.780	Oryzias_latipes
MGP_SPRETEiJ_G0025994	Gfm1	95	81.450	ENSORLG00020003362	gfm1	96	81.450	Oryzias_latipes_hni
MGP_SPRETEiJ_G0025994	Gfm1	95	81.032	ENSORLG00015005829	gfm1	96	81.032	Oryzias_latipes_hsok
MGP_SPRETEiJ_G0025994	Gfm1	95	81.869	ENSOMEG00000012894	gfm1	96	81.869	Oryzias_melastigma
MGP_SPRETEiJ_G0025994	Gfm1	100	91.248	ENSOGAG00000008298	GFM1	100	91.114	Otolemur_garnettii
MGP_SPRETEiJ_G0025994	Gfm1	96	93.398	ENSOARG00000002409	GFM1	100	93.398	Ovis_aries
MGP_SPRETEiJ_G0025994	Gfm1	98	91.576	ENSPPAG00000033881	GFM1	100	90.849	Pan_paniscus
MGP_SPRETEiJ_G0025994	Gfm1	98	92.963	ENSPPRG00000009281	GFM1	100	92.706	Panthera_pardus
MGP_SPRETEiJ_G0025994	Gfm1	98	92.828	ENSPTIG00000012416	GFM1	100	92.573	Panthera_tigris_altaica
MGP_SPRETEiJ_G0025994	Gfm1	98	91.576	ENSPTRG00000015570	GFM1	100	90.849	Pan_troglodytes
MGP_SPRETEiJ_G0025994	Gfm1	100	90.981	ENSPANG00000016512	GFM1	100	90.981	Papio_anubis
MGP_SPRETEiJ_G0025994	Gfm1	100	78.695	ENSPKIG00000004876	gfm1	100	78.695	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0025994	Gfm1	100	81.092	ENSPSIG00000012567	GFM1	99	81.092	Pelodiscus_sinensis
MGP_SPRETEiJ_G0025994	Gfm1	95	79.277	ENSPMGG00000014068	gfm1	99	79.277	Periophthalmus_magnuspinnatus
MGP_SPRETEiJ_G0025994	Gfm1	100	95.073	ENSPEMG00000008942	Gfm1	100	95.073	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0025994	Gfm1	99	85.206	ENSPCIG00000020195	GFM1	98	85.023	Phascolarctos_cinereus
MGP_SPRETEiJ_G0025994	Gfm1	100	80.160	ENSPFOG00000011022	gfm1	100	80.160	Poecilia_formosa
MGP_SPRETEiJ_G0025994	Gfm1	100	79.775	ENSPLAG00000019585	gfm1	100	79.580	Poecilia_latipinna
MGP_SPRETEiJ_G0025994	Gfm1	100	80.027	ENSPMEG00000012376	gfm1	100	80.027	Poecilia_mexicana
MGP_SPRETEiJ_G0025994	Gfm1	100	79.760	ENSPREG00000001332	gfm1	95	79.760	Poecilia_reticulata
MGP_SPRETEiJ_G0025994	Gfm1	98	91.848	ENSPPYG00000014244	GFM1	100	91.114	Pongo_abelii
MGP_SPRETEiJ_G0025994	Gfm1	93	87.482	ENSPCAG00000008934	GFM1	100	87.482	Procavia_capensis
MGP_SPRETEiJ_G0025994	Gfm1	98	92.663	ENSPCOG00000022259	GFM1	100	91.910	Propithecus_coquereli
MGP_SPRETEiJ_G0025994	Gfm1	100	91.512	ENSPVAG00000013605	GFM1	100	91.512	Pteropus_vampyrus
MGP_SPRETEiJ_G0025994	Gfm1	95	82.008	ENSPNYG00000006037	gfm1	97	82.008	Pundamilia_nyererei
MGP_SPRETEiJ_G0025994	Gfm1	100	78.429	ENSPNAG00000001237	gfm1	100	78.429	Pygocentrus_nattereri
MGP_SPRETEiJ_G0025994	Gfm1	100	95.606	ENSRNOG00000012873	Gfm1	100	95.606	Rattus_norvegicus
MGP_SPRETEiJ_G0025994	Gfm1	98	91.576	ENSRBIG00000031363	GFM1	100	90.849	Rhinopithecus_bieti
MGP_SPRETEiJ_G0025994	Gfm1	98	91.712	ENSRROG00000031081	GFM1	100	90.981	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0025994	Gfm1	91	61.303	YLR069C	-	90	56.835	Saccharomyces_cerevisiae
MGP_SPRETEiJ_G0025994	Gfm1	100	91.512	ENSSBOG00000023252	GFM1	100	91.512	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0025994	Gfm1	99	86.957	ENSSHAG00000017772	GFM1	99	86.461	Sarcophilus_harrisii
MGP_SPRETEiJ_G0025994	Gfm1	100	78.562	ENSSFOG00015003117	gfm1	99	80.690	Scleropages_formosus
MGP_SPRETEiJ_G0025994	Gfm1	100	77.097	ENSSMAG00000013221	gfm1	100	76.565	Scophthalmus_maximus
MGP_SPRETEiJ_G0025994	Gfm1	98	78.940	ENSSDUG00000018665	gfm1	96	80.474	Seriola_dumerili
MGP_SPRETEiJ_G0025994	Gfm1	98	78.833	ENSSLDG00000020606	gfm1	96	80.474	Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0025994	Gfm1	94	82.400	ENSSPUG00000018686	GFM1	97	81.032	Sphenodon_punctatus
MGP_SPRETEiJ_G0025994	Gfm1	95	80.474	ENSSPAG00000008800	gfm1	96	80.474	Stegastes_partitus
MGP_SPRETEiJ_G0025994	Gfm1	100	91.512	ENSSSCG00000025651	GFM1	100	91.512	Sus_scrofa
MGP_SPRETEiJ_G0025994	Gfm1	100	78.277	ENSTRUG00000009244	gfm1	100	77.763	Takifugu_rubripes
MGP_SPRETEiJ_G0025994	Gfm1	100	78.296	ENSTNIG00000007729	gfm1	100	78.296	Tetraodon_nigroviridis
MGP_SPRETEiJ_G0025994	Gfm1	98	77.868	ENSTBEG00000017404	GFM1	100	77.778	Tupaia_belangeri
MGP_SPRETEiJ_G0025994	Gfm1	98	92.141	ENSTTRG00000001735	GFM1	100	90.753	Tursiops_truncatus
MGP_SPRETEiJ_G0025994	Gfm1	98	92.422	ENSUAMG00000026381	GFM1	100	92.042	Ursus_americanus
MGP_SPRETEiJ_G0025994	Gfm1	98	92.422	ENSUMAG00000011268	GFM1	100	92.042	Ursus_maritimus
MGP_SPRETEiJ_G0025994	Gfm1	100	88.712	ENSVPAG00000009444	GFM1	100	88.712	Vicugna_pacos
MGP_SPRETEiJ_G0025994	Gfm1	99	91.589	ENSVVUG00000020091	GFM1	100	93.639	Vulpes_vulpes
MGP_SPRETEiJ_G0025994	Gfm1	100	82.181	ENSXETG00000032551	GFM1	100	82.181	Xenopus_tropicalis
MGP_SPRETEiJ_G0025994	Gfm1	72	81.606	ENSXCOG00000012590	gfm1	89	81.606	Xiphophorus_couchianus
MGP_SPRETEiJ_G0025994	Gfm1	100	79.588	ENSXMAG00000000261	gfm1	100	79.494	Xiphophorus_maculatus