EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0026252 (Gene tree)
Gene ID: -
Gene Symbol: Tdrkh
Alias: 2700091C21Rik|Tdrd2
Full Name: tudor and KH domain containing protein
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Plus strand
Length: 18224 bases
Position: chr3:92208986-92227209
Accession: 1919884
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0061333	KH_1	PF00013.29	1.9e-34	1	2
MGP_SPRETEiJ_P0061333	KH_1	PF00013.29	1.9e-34	2	2
MGP_SPRETEiJ_P0061332	KH_1	PF00013.29	1.2e-33	1	2
MGP_SPRETEiJ_P0061332	KH_1	PF00013.29	1.2e-33	2	2
MGP_SPRETEiJ_P0061335	KH_1	PF00013.29	5.8e-28	1	2
MGP_SPRETEiJ_P0061335	KH_1	PF00013.29	5.8e-28	2	2
MGP_SPRETEiJ_P0061334	KH_1	PF00013.29	3e-19	1	1
MGP_SPRETEiJ_P0061334	TUDOR	PF00567.24	4.7e-29	1	1
MGP_SPRETEiJ_P0061335	TUDOR	PF00567.24	5.3e-29	1	1
MGP_SPRETEiJ_P0061332	TUDOR	PF00567.24	5.4e-29	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0061332	-	1762	-	MGP_SPRETEiJ_P0061332	560 (aa)	-	-
MGP_SPRETEiJ_T0061333	-	1231	-	MGP_SPRETEiJ_P0061333	296 (aa)	-	UPI00001C2CC6
MGP_SPRETEiJ_T0061331	-	476	-	MGP_SPRETEiJ_P0061331	50 (aa)	-	UPI000620AAF8
MGP_SPRETEiJ_T0061334	-	2468	-	MGP_SPRETEiJ_P0061334	515 (aa)	-	-
MGP_SPRETEiJ_T0061335	-	2578	-	MGP_SPRETEiJ_P0061335	556 (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0026252's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0026252's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_SPRETEiJ_G0026252	Tdrkh	74	31.707	MGP_SPRETEiJ_G0024330	Fubp3	79	31.707
MGP_SPRETEiJ_G0026252	Tdrkh	52	30.625	MGP_SPRETEiJ_G0029367	Igf2bp3	55	30.625

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0026252	Tdrkh	100	91.250	ENSG00000182134	TDRKH	100	98.473	Homo_sapiens
MGP_SPRETEiJ_G0026252	Tdrkh	99	90.203	ENSAMEG00000000421	TDRKH	99	89.876	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0026252	Tdrkh	85	56.735	ENSACAG00000007457	TDRKH	95	56.735	Anolis_carolinensis
MGP_SPRETEiJ_G0026252	Tdrkh	100	90.893	ENSANAG00000021663	TDRKH	98	92.673	Aotus_nancymaae
MGP_SPRETEiJ_G0026252	Tdrkh	100	90.714	ENSBTAG00000021594	TDRKH	99	90.714	Bos_taurus
MGP_SPRETEiJ_G0026252	Tdrkh	99	91.837	ENSCJAG00000007955	TDRKH	99	90.536	Callithrix_jacchus
MGP_SPRETEiJ_G0026252	Tdrkh	100	90.764	ENSCAFG00000012856	TDRKH	99	90.764	Canis_familiaris
MGP_SPRETEiJ_G0026252	Tdrkh	100	90.764	ENSCAFG00020009606	TDRKH	99	90.764	Canis_lupus_dingo
MGP_SPRETEiJ_G0026252	Tdrkh	99	91.497	ENSCHIG00000025326	TDRKH	99	89.821	Capra_hircus
MGP_SPRETEiJ_G0026252	Tdrkh	99	92.857	ENSTSYG00000010405	TDRKH	99	90.860	Carlito_syrichta
MGP_SPRETEiJ_G0026252	Tdrkh	99	88.776	ENSCAPG00000007565	TDRKH	97	88.132	Cavia_aperea
MGP_SPRETEiJ_G0026252	Tdrkh	100	90.179	ENSCPOG00000003556	TDRKH	99	90.179	Cavia_porcellus
MGP_SPRETEiJ_G0026252	Tdrkh	100	90.536	ENSCCAG00000033931	TDRKH	99	90.536	Cebus_capucinus
MGP_SPRETEiJ_G0026252	Tdrkh	99	93.197	ENSCATG00000041878	TDRKH	99	91.429	Cercocebus_atys
MGP_SPRETEiJ_G0026252	Tdrkh	100	88.214	ENSCLAG00000001088	TDRKH	99	88.214	Chinchilla_lanigera
MGP_SPRETEiJ_G0026252	Tdrkh	99	92.857	ENSCSAG00000001820	TDRKH	99	91.429	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0026252	Tdrkh	94	86.375	ENSCHOG00000000264	TDRKH	88	87.143	Choloepus_hoffmanni
MGP_SPRETEiJ_G0026252	Tdrkh	94	63.031	ENSCPBG00000008824	TDRKH	89	63.586	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0026252	Tdrkh	99	92.177	ENSCANG00000037367	TDRKH	97	92.445	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0026252	Tdrkh	98	70.588	ENSCGRG00001011699	-	99	68.148	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0026252	Tdrkh	98	95.502	ENSCGRG00001006583	-	99	94.054	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0026252	Tdrkh	96	67.138	ENSCGRG00001010793	-	90	68.100	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0026252	Tdrkh	98	70.588	ENSCGRG00000013230	-	99	67.963	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0026252	Tdrkh	98	95.502	ENSCGRG00000012937	-	99	94.054	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0026252	Tdrkh	96	66.784	ENSCGRG00000012138	-	90	67.742	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0026252	Tdrkh	92	91.636	ENSDNOG00000035650	TDRKH	100	88.632	Dasypus_novemcinctus
MGP_SPRETEiJ_G0026252	Tdrkh	99	93.197	ENSDORG00000015322	Tdrkh	99	92.143	Dipodomys_ordii
MGP_SPRETEiJ_G0026252	Tdrkh	99	81.996	ENSETEG00000008020	TDRKH	99	81.996	Echinops_telfairi
MGP_SPRETEiJ_G0026252	Tdrkh	87	36.647	ENSEBUG00000010481	TDRKH	83	36.452	Eptatretus_burgeri
MGP_SPRETEiJ_G0026252	Tdrkh	99	92.177	ENSEASG00005005213	TDRKH	99	91.071	Equus_asinus_asinus
MGP_SPRETEiJ_G0026252	Tdrkh	99	93.197	ENSECAG00000013096	TDRKH	97	94.036	Equus_caballus
MGP_SPRETEiJ_G0026252	Tdrkh	72	95.000	ENSEEUG00000015952	TDRKH	71	95.000	Erinaceus_europaeus
MGP_SPRETEiJ_G0026252	Tdrkh	100	90.747	ENSFCAG00000010980	TDRKH	99	90.747	Felis_catus
MGP_SPRETEiJ_G0026252	Tdrkh	100	88.214	ENSFDAG00000015315	TDRKH	99	88.214	Fukomys_damarensis
MGP_SPRETEiJ_G0026252	Tdrkh	97	55.616	ENSGALG00000031812	TDRKH	96	55.616	Gallus_gallus
MGP_SPRETEiJ_G0026252	Tdrkh	99	61.905	ENSGAGG00000005447	TDRKH	99	62.434	Gopherus_agassizii
MGP_SPRETEiJ_G0026252	Tdrkh	99	92.857	ENSGGOG00000025419	TDRKH	98	93.241	Gorilla_gorilla
MGP_SPRETEiJ_G0026252	Tdrkh	100	88.078	ENSHGLG00000007478	TDRKH	99	88.078	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0026252	Tdrkh	100	88.078	ENSHGLG00100007927	TDRKH	99	88.078	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0026252	Tdrkh	100	92.321	ENSSTOG00000006506	TDRKH	99	92.321	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0026252	Tdrkh	99	91.186	ENSJJAG00000000323	Tdrkh	99	91.071	Jaculus_jaculus
MGP_SPRETEiJ_G0026252	Tdrkh	75	60.699	ENSLACG00000017639	TDRKH	98	54.878	Latimeria_chalumnae
MGP_SPRETEiJ_G0026252	Tdrkh	99	88.235	ENSLAFG00000006274	TDRKH	99	88.235	Loxodonta_africana
MGP_SPRETEiJ_G0026252	Tdrkh	99	93.537	ENSMFAG00000041641	TDRKH	99	91.786	Macaca_fascicularis
MGP_SPRETEiJ_G0026252	Tdrkh	99	93.537	ENSMMUG00000009096	TDRKH	97	93.638	Macaca_mulatta
MGP_SPRETEiJ_G0026252	Tdrkh	99	93.537	ENSMNEG00000021524	TDRKH	99	91.786	Macaca_nemestrina
MGP_SPRETEiJ_G0026252	Tdrkh	99	93.197	ENSMLEG00000033882	TDRKH	99	91.429	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0026252	Tdrkh	99	94.558	ENSMAUG00000019159	Tdrkh	99	92.998	Mesocricetus_auratus
MGP_SPRETEiJ_G0026252	Tdrkh	100	71.786	ENSMICG00000042330	-	99	72.101	Microcebus_murinus
MGP_SPRETEiJ_G0026252	Tdrkh	99	92.857	ENSMICG00000010682	-	99	91.607	Microcebus_murinus
MGP_SPRETEiJ_G0026252	Tdrkh	99	92.517	ENSMOCG00000002113	-	99	84.601	Microtus_ochrogaster
MGP_SPRETEiJ_G0026252	Tdrkh	99	71.429	ENSMOCG00000014074	-	99	65.480	Microtus_ochrogaster
MGP_SPRETEiJ_G0026252	Tdrkh	100	81.019	ENSMODG00000018906	TDRKH	96	81.019	Monodelphis_domestica
MGP_SPRETEiJ_G0026252	Tdrkh	100	100.000	MGP_CAROLIEiJ_G0025310	Tdrkh	100	100.000	Mus_caroli
MGP_SPRETEiJ_G0026252	Tdrkh	100	100.000	ENSMUSG00000041912	Tdrkh	100	100.000	Mus_musculus
MGP_SPRETEiJ_G0026252	Tdrkh	100	98.986	MGP_PahariEiJ_G0026753	Tdrkh	100	98.986	Mus_pahari
MGP_SPRETEiJ_G0026252	Tdrkh	99	90.878	ENSMPUG00000003558	TDRKH	99	90.391	Mustela_putorius_furo
MGP_SPRETEiJ_G0026252	Tdrkh	100	88.929	ENSMLUG00000002213	TDRKH	99	88.929	Myotis_lucifugus
MGP_SPRETEiJ_G0026252	Tdrkh	100	94.464	ENSNGAG00000017825	Tdrkh	100	94.464	Nannospalax_galili
MGP_SPRETEiJ_G0026252	Tdrkh	99	92.517	ENSNLEG00000010284	TDRKH	98	92.843	Nomascus_leucogenys
MGP_SPRETEiJ_G0026252	Tdrkh	95	94.805	ENSMEUG00000006144	TDRKH	89	94.805	Notamacropus_eugenii
MGP_SPRETEiJ_G0026252	Tdrkh	86	90.909	ENSOPRG00000016049	TDRKH	80	90.909	Ochotona_princeps
MGP_SPRETEiJ_G0026252	Tdrkh	100	88.036	ENSODEG00000009532	-	99	88.036	Octodon_degus
MGP_SPRETEiJ_G0026252	Tdrkh	100	86.511	ENSODEG00000001075	-	99	86.511	Octodon_degus
MGP_SPRETEiJ_G0026252	Tdrkh	62	72.340	ENSOANG00000001094	-	88	72.340	Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0026252	Tdrkh	99	86.735	ENSOCUG00000001387	TDRKH	99	79.107	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0026252	Tdrkh	99	75.090	ENSOGAG00000032601	-	99	75.090	Otolemur_garnettii
MGP_SPRETEiJ_G0026252	Tdrkh	98	75.517	ENSOGAG00000030085	-	98	73.793	Otolemur_garnettii
MGP_SPRETEiJ_G0026252	Tdrkh	99	87.075	ENSOGAG00000001839	-	99	82.011	Otolemur_garnettii
MGP_SPRETEiJ_G0026252	Tdrkh	99	91.497	ENSOARG00000021052	TDRKH	99	89.821	Ovis_aries
MGP_SPRETEiJ_G0026252	Tdrkh	99	93.197	ENSPPAG00000028994	TDRKH	99	91.786	Pan_paniscus
MGP_SPRETEiJ_G0026252	Tdrkh	99	92.568	ENSPPRG00000001585	TDRKH	99	91.281	Panthera_pardus
MGP_SPRETEiJ_G0026252	Tdrkh	99	92.568	ENSPTIG00000019916	TDRKH	99	91.281	Panthera_tigris_altaica
MGP_SPRETEiJ_G0026252	Tdrkh	99	93.197	ENSPTRG00000001297	TDRKH	98	93.439	Pan_troglodytes
MGP_SPRETEiJ_G0026252	Tdrkh	99	92.857	ENSPANG00000001986	TDRKH	99	91.429	Papio_anubis
MGP_SPRETEiJ_G0026252	Tdrkh	93	62.197	ENSPSIG00000008541	TDRKH	100	62.197	Pelodiscus_sinensis
MGP_SPRETEiJ_G0026252	Tdrkh	99	98.299	ENSPEMG00000011171	Tdrkh	100	96.786	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0026252	Tdrkh	100	81.579	ENSPCIG00000021201	TDRKH	99	81.579	Phascolarctos_cinereus
MGP_SPRETEiJ_G0026252	Tdrkh	99	92.857	ENSPPYG00000000855	TDRKH	99	91.607	Pongo_abelii
MGP_SPRETEiJ_G0026252	Tdrkh	99	91.497	ENSPCOG00000027505	TDRKH	99	89.286	Propithecus_coquereli
MGP_SPRETEiJ_G0026252	Tdrkh	100	86.786	ENSPVAG00000005234	TDRKH	99	86.786	Pteropus_vampyrus
MGP_SPRETEiJ_G0026252	Tdrkh	99	99.660	ENSRNOG00000020860	Tdrkh	100	98.393	Rattus_norvegicus
MGP_SPRETEiJ_G0026252	Tdrkh	99	92.517	ENSRBIG00000044860	TDRKH	99	91.429	Rhinopithecus_bieti
MGP_SPRETEiJ_G0026252	Tdrkh	99	92.517	ENSRROG00000036923	TDRKH	99	91.429	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0026252	Tdrkh	100	90.541	ENSSBOG00000034454	TDRKH	99	72.321	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0026252	Tdrkh	100	81.722	ENSSHAG00000015859	TDRKH	88	81.722	Sarcophilus_harrisii
MGP_SPRETEiJ_G0026252	Tdrkh	99	88.776	ENSSARG00000008525	TDRKH	99	78.712	Sorex_araneus
MGP_SPRETEiJ_G0026252	Tdrkh	98	57.475	ENSSPUG00000002369	TDRKH	95	62.452	Sphenodon_punctatus
MGP_SPRETEiJ_G0026252	Tdrkh	99	90.476	ENSSSCG00000027770	TDRKH	100	89.606	Sus_scrofa
MGP_SPRETEiJ_G0026252	Tdrkh	100	89.821	ENSTBEG00000011201	TDRKH	99	89.821	Tupaia_belangeri
MGP_SPRETEiJ_G0026252	Tdrkh	100	83.036	ENSTTRG00000003149	TDRKH	99	83.036	Tursiops_truncatus
MGP_SPRETEiJ_G0026252	Tdrkh	100	89.680	ENSUAMG00000019589	TDRKH	99	89.680	Ursus_americanus
MGP_SPRETEiJ_G0026252	Tdrkh	100	89.858	ENSUMAG00000001456	TDRKH	99	89.858	Ursus_maritimus
MGP_SPRETEiJ_G0026252	Tdrkh	100	90.893	ENSVPAG00000000666	TDRKH	99	90.893	Vicugna_pacos
MGP_SPRETEiJ_G0026252	Tdrkh	100	91.281	ENSVVUG00000013241	TDRKH	99	91.845	Vulpes_vulpes
MGP_SPRETEiJ_G0026252	Tdrkh	98	38.811	ENSXETG00000019909	tdrkh	91	40.189	Xenopus_tropicalis