EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0026347 (Gene tree)
Gene ID: -
Gene Symbol: Chd1l
Alias: 4432404A22Rik|Snf2p
Full Name: chromodomain helicase DNA binding protein 1-like
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Minus strand
Length: 51989 bases
Position: chr3:95535695-95587683
Accession: 1915308
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0061798	ResIII	PF04851.15	3.3e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0061800	-	2942	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0061797	-	2956	-	MGP_SPRETEiJ_P0061797	892 (aa)	-	-
MGP_SPRETEiJ_T0061798	-	3002	-	MGP_SPRETEiJ_P0061798	900 (aa)	-	-
MGP_SPRETEiJ_T0061799	-	480	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0026347's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0026347's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_SPRETEiJ_G0026347	Chd1l	54	39.362	MGP_SPRETEiJ_G0023848	Hells	68	39.362
MGP_SPRETEiJ_G0026347	Chd1l	50	32.657	MGP_SPRETEiJ_G0019515	-	81	30.021
MGP_SPRETEiJ_G0026347	Chd1l	50	30.584	MGP_SPRETEiJ_G0027297	Rad54l	66	30.785
MGP_SPRETEiJ_G0026347	Chd1l	50	30.920	MGP_SPRETEiJ_G0026758	Rad54b	56	30.392
MGP_SPRETEiJ_G0026347	Chd1l	62	43.380	MGP_SPRETEiJ_G0034192	Smarca1	75	42.470

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0026347	Chd1l	99	87.177	ENSG00000131778	CHD1L	100	88.207	Homo_sapiens
MGP_SPRETEiJ_G0026347	Chd1l	96	64.808	ENSAPOG00000001539	chd1l	98	65.157	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0026347	Chd1l	99	85.377	ENSAMEG00000017063	CHD1L	99	85.377	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0026347	Chd1l	95	66.432	ENSACIG00000001164	chd1l	97	66.317	Amphilophus_citrinellus
MGP_SPRETEiJ_G0026347	Chd1l	97	64.740	ENSAOCG00000014510	chd1l	85	65.501	Amphiprion_ocellaris
MGP_SPRETEiJ_G0026347	Chd1l	96	62.485	ENSAPEG00000017573	chd1l	94	62.718	Amphiprion_percula
MGP_SPRETEiJ_G0026347	Chd1l	98	61.583	ENSAPEG00000017450	chd1l	94	63.498	Amphiprion_percula
MGP_SPRETEiJ_G0026347	Chd1l	98	65.103	ENSATEG00000013058	chd1l	92	65.694	Anabas_testudineus
MGP_SPRETEiJ_G0026347	Chd1l	95	72.995	ENSAPLG00000009976	CHD1L	94	73.113	Anas_platyrhynchos
MGP_SPRETEiJ_G0026347	Chd1l	98	67.637	ENSACAG00000017686	CHD1L	98	67.861	Anolis_carolinensis
MGP_SPRETEiJ_G0026347	Chd1l	97	87.715	ENSANAG00000024347	CHD1L	99	86.435	Aotus_nancymaae
MGP_SPRETEiJ_G0026347	Chd1l	98	64.645	ENSACLG00000019304	chd1l	96	64.747	Astatotilapia_calliptera
MGP_SPRETEiJ_G0026347	Chd1l	99	59.910	ENSAMXG00000012367	chd1l	87	60.343	Astyanax_mexicanus
MGP_SPRETEiJ_G0026347	Chd1l	98	87.056	ENSBTAG00000020831	CHD1L	97	87.056	Bos_taurus
MGP_SPRETEiJ_G0026347	Chd1l	99	86.517	ENSCJAG00000002406	CHD1L	99	86.517	Callithrix_jacchus
MGP_SPRETEiJ_G0026347	Chd1l	99	82.353	ENSCAFG00000010944	CHD1L	97	82.877	Canis_familiaris
MGP_SPRETEiJ_G0026347	Chd1l	99	84.175	ENSCAFG00020020121	CHD1L	96	85.867	Canis_lupus_dingo
MGP_SPRETEiJ_G0026347	Chd1l	99	85.892	ENSCHIG00000013871	CHD1L	97	86.827	Capra_hircus
MGP_SPRETEiJ_G0026347	Chd1l	96	88.551	ENSTSYG00000003005	CHD1L	100	88.551	Carlito_syrichta
MGP_SPRETEiJ_G0026347	Chd1l	98	84.163	ENSCPOG00000009000	CHD1L	98	84.163	Cavia_porcellus
MGP_SPRETEiJ_G0026347	Chd1l	99	83.708	ENSCCAG00000036079	CHD1L	99	83.708	Cebus_capucinus
MGP_SPRETEiJ_G0026347	Chd1l	98	88.417	ENSCATG00000031044	CHD1L	99	87.753	Cercocebus_atys
MGP_SPRETEiJ_G0026347	Chd1l	98	85.649	ENSCLAG00000000880	CHD1L	100	85.412	Chinchilla_lanigera
MGP_SPRETEiJ_G0026347	Chd1l	98	88.532	ENSCSAG00000018386	CHD1L	97	88.431	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0026347	Chd1l	98	74.171	ENSCPBG00000002600	CHD1L	98	74.171	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0026347	Chd1l	99	86.292	ENSCANG00000020239	CHD1L	99	86.292	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0026347	Chd1l	98	90.618	ENSCGRG00001021624	Chd1l	98	90.618	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0026347	Chd1l	93	90.865	ENSCGRG00000007554	Chd1l	98	90.865	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0026347	Chd1l	98	63.719	ENSCVAG00000002595	chd1l	90	63.721	Cyprinodon_variegatus
MGP_SPRETEiJ_G0026347	Chd1l	98	65.557	ENSDARG00000015471	chd1l	85	65.336	Danio_rerio
MGP_SPRETEiJ_G0026347	Chd1l	99	86.308	ENSDNOG00000019504	CHD1L	97	87.071	Dasypus_novemcinctus
MGP_SPRETEiJ_G0026347	Chd1l	100	80.773	ENSDORG00000013555	Chd1l	98	82.095	Dipodomys_ordii
MGP_SPRETEiJ_G0026347	Chd1l	89	77.522	ENSETEG00000008445	CHD1L	88	79.348	Echinops_telfairi
MGP_SPRETEiJ_G0026347	Chd1l	69	61.290	ENSEBUG00000005791	chd1l	75	74.468	Eptatretus_burgeri
MGP_SPRETEiJ_G0026347	Chd1l	99	85.989	ENSEASG00005007364	CHD1L	99	87.931	Equus_asinus_asinus
MGP_SPRETEiJ_G0026347	Chd1l	99	85.876	ENSECAG00000008915	CHD1L	99	87.808	Equus_caballus
MGP_SPRETEiJ_G0026347	Chd1l	96	55.454	ENSELUG00000016844	chd1l	83	55.224	Esox_lucius
MGP_SPRETEiJ_G0026347	Chd1l	98	85.257	ENSFCAG00000007777	CHD1L	97	85.486	Felis_catus
MGP_SPRETEiJ_G0026347	Chd1l	99	70.595	ENSFALG00000006087	CHD1L	97	71.347	Ficedula_albicollis
MGP_SPRETEiJ_G0026347	Chd1l	96	86.332	ENSFDAG00000012431	CHD1L	100	86.343	Fukomys_damarensis
MGP_SPRETEiJ_G0026347	Chd1l	98	63.356	ENSFHEG00000012420	chd1l	85	64.377	Fundulus_heteroclitus
MGP_SPRETEiJ_G0026347	Chd1l	99	70.383	ENSGALG00000015038	CHD1L	97	70.696	Gallus_gallus
MGP_SPRETEiJ_G0026347	Chd1l	98	64.189	ENSGAFG00000018198	chd1l	97	61.944	Gambusia_affinis
MGP_SPRETEiJ_G0026347	Chd1l	59	66.412	ENSGACG00000014042	chd1l	100	66.412	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0026347	Chd1l	95	75.147	ENSGAGG00000014432	CHD1L	96	75.147	Gopherus_agassizii
MGP_SPRETEiJ_G0026347	Chd1l	99	86.742	ENSGGOG00000001067	CHD1L	99	86.742	Gorilla_gorilla
MGP_SPRETEiJ_G0026347	Chd1l	98	64.531	ENSHBUG00000007464	chd1l	96	64.849	Haplochromis_burtoni
MGP_SPRETEiJ_G0026347	Chd1l	98	84.852	ENSHGLG00000008933	CHD1L	100	84.275	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0026347	Chd1l	94	83.729	ENSHGLG00100007155	CHD1L	100	83.875	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0026347	Chd1l	94	63.007	ENSHCOG00000012787	chd1l	92	63.007	Hippocampus_comes
MGP_SPRETEiJ_G0026347	Chd1l	99	60.090	ENSIPUG00000022617	chd1l	86	60.410	Ictalurus_punctatus
MGP_SPRETEiJ_G0026347	Chd1l	100	75.969	ENSSTOG00000007032	CHD1L	98	77.314	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0026347	Chd1l	99	63.075	ENSKMAG00000014358	chd1l	86	64.245	Kryptolebias_marmoratus
MGP_SPRETEiJ_G0026347	Chd1l	97	63.730	ENSLBEG00000023845	chd1l	97	63.158	Labrus_bergylta
MGP_SPRETEiJ_G0026347	Chd1l	96	64.828	ENSLACG00000006262	CHD1L	85	65.057	Latimeria_chalumnae
MGP_SPRETEiJ_G0026347	Chd1l	95	71.143	ENSLOCG00000010574	chd1l	85	70.960	Lepisosteus_oculatus
MGP_SPRETEiJ_G0026347	Chd1l	96	85.484	ENSLAFG00000018136	CHD1L	99	86.235	Loxodonta_africana
MGP_SPRETEiJ_G0026347	Chd1l	94	87.782	ENSMFAG00000043562	CHD1L	100	88.420	Macaca_fascicularis
MGP_SPRETEiJ_G0026347	Chd1l	98	88.073	ENSMMUG00000009024	CHD1L	99	87.416	Macaca_mulatta
MGP_SPRETEiJ_G0026347	Chd1l	98	88.188	ENSMNEG00000039905	CHD1L	99	87.528	Macaca_nemestrina
MGP_SPRETEiJ_G0026347	Chd1l	98	88.417	ENSMLEG00000030900	CHD1L	99	87.753	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0026347	Chd1l	97	62.971	ENSMAMG00000012822	chd1l	98	61.618	Mastacembelus_armatus
MGP_SPRETEiJ_G0026347	Chd1l	98	64.645	ENSMZEG00005020830	chd1l	86	65.157	Maylandia_zebra
MGP_SPRETEiJ_G0026347	Chd1l	96	71.111	ENSMGAG00000014304	CHD1L	98	71.631	Meleagris_gallopavo
MGP_SPRETEiJ_G0026347	Chd1l	98	87.643	ENSMICG00000002497	CHD1L	97	87.643	Microcebus_murinus
MGP_SPRETEiJ_G0026347	Chd1l	100	90.919	ENSMOCG00000006305	Chd1l	100	90.919	Microtus_ochrogaster
MGP_SPRETEiJ_G0026347	Chd1l	96	61.556	ENSMMOG00000005964	chd1l	90	61.440	Mola_mola
MGP_SPRETEiJ_G0026347	Chd1l	99	78.227	ENSMODG00000018717	CHD1L	97	78.833	Monodelphis_domestica
MGP_SPRETEiJ_G0026347	Chd1l	98	63.584	ENSMALG00000014675	chd1l	85	64.550	Monopterus_albus
MGP_SPRETEiJ_G0026347	Chd1l	100	98.446	MGP_CAROLIEiJ_G0025401	Chd1l	100	98.446	Mus_caroli
MGP_SPRETEiJ_G0026347	Chd1l	100	99.000	ENSMUSG00000028089	Chd1l	100	99.000	Mus_musculus
MGP_SPRETEiJ_G0026347	Chd1l	100	96.197	MGP_PahariEiJ_G0026845	Chd1l	100	96.197	Mus_pahari
MGP_SPRETEiJ_G0026347	Chd1l	99	84.193	ENSMPUG00000000615	CHD1L	97	84.949	Mustela_putorius_furo
MGP_SPRETEiJ_G0026347	Chd1l	98	83.428	ENSMLUG00000007573	CHD1L	97	83.541	Myotis_lucifugus
MGP_SPRETEiJ_G0026347	Chd1l	97	85.194	ENSNGAG00000000908	Chd1l	99	85.194	Nannospalax_galili
MGP_SPRETEiJ_G0026347	Chd1l	97	62.400	ENSNBRG00000006021	chd1l	93	63.182	Neolamprologus_brichardi
MGP_SPRETEiJ_G0026347	Chd1l	99	86.517	ENSNLEG00000000179	CHD1L	99	86.517	Nomascus_leucogenys
MGP_SPRETEiJ_G0026347	Chd1l	95	74.326	ENSOPRG00000006973	CHD1L	99	74.645	Ochotona_princeps
MGP_SPRETEiJ_G0026347	Chd1l	100	80.731	ENSODEG00000002494	CHD1L	100	81.898	Octodon_degus
MGP_SPRETEiJ_G0026347	Chd1l	98	64.874	ENSONIG00000003183	chd1l	87	65.389	Oreochromis_niloticus
MGP_SPRETEiJ_G0026347	Chd1l	86	71.742	ENSOANG00000003068	CHD1L	93	72.129	Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0026347	Chd1l	100	81.457	ENSOCUG00000009336	CHD1L	99	81.457	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0026347	Chd1l	97	62.989	ENSORLG00000003673	chd1l	93	64.085	Oryzias_latipes
MGP_SPRETEiJ_G0026347	Chd1l	97	63.237	ENSORLG00020005123	chd1l	94	64.776	Oryzias_latipes_hni
MGP_SPRETEiJ_G0026347	Chd1l	98	62.887	ENSORLG00015001680	chd1l	99	62.912	Oryzias_latipes_hsok
MGP_SPRETEiJ_G0026347	Chd1l	85	57.143	ENSOMEG00000006109	chd1l	84	58.609	Oryzias_melastigma
MGP_SPRETEiJ_G0026347	Chd1l	99	84.529	ENSOGAG00000008775	CHD1L	99	84.529	Otolemur_garnettii
MGP_SPRETEiJ_G0026347	Chd1l	99	85.586	ENSOARG00000020547	CHD1L	98	87.634	Ovis_aries
MGP_SPRETEiJ_G0026347	Chd1l	99	84.589	ENSPPAG00000039193	CHD1L	98	88.656	Pan_paniscus
MGP_SPRETEiJ_G0026347	Chd1l	98	85.486	ENSPPRG00000010258	CHD1L	97	85.486	Panthera_pardus
MGP_SPRETEiJ_G0026347	Chd1l	98	87.729	ENSPTRG00000001220	CHD1L	97	87.729	Pan_troglodytes
MGP_SPRETEiJ_G0026347	Chd1l	98	88.417	ENSPANG00000009170	CHD1L	99	87.753	Papio_anubis
MGP_SPRETEiJ_G0026347	Chd1l	99	64.397	ENSPKIG00000022166	chd1l	97	63.560	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0026347	Chd1l	98	74.543	ENSPSIG00000012595	CHD1L	97	74.543	Pelodiscus_sinensis
MGP_SPRETEiJ_G0026347	Chd1l	99	88.677	ENSPEMG00000013528	Chd1l	98	88.939	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0026347	Chd1l	93	80.097	ENSPCIG00000030409	CHD1L	98	81.034	Phascolarctos_cinereus
MGP_SPRETEiJ_G0026347	Chd1l	98	64.692	ENSPFOG00000015948	chd1l	84	65.197	Poecilia_formosa
MGP_SPRETEiJ_G0026347	Chd1l	98	65.085	ENSPLAG00000015145	chd1l	96	64.368	Poecilia_latipinna
MGP_SPRETEiJ_G0026347	Chd1l	98	64.439	ENSPMEG00000008720	chd1l	90	65.283	Poecilia_mexicana
MGP_SPRETEiJ_G0026347	Chd1l	96	63.364	ENSPREG00000017885	chd1l	97	63.249	Poecilia_reticulata
MGP_SPRETEiJ_G0026347	Chd1l	98	87.973	ENSPPYG00000000946	CHD1L	97	87.973	Pongo_abelii
MGP_SPRETEiJ_G0026347	Chd1l	98	74.743	ENSPCAG00000005959	CHD1L	97	75.086	Procavia_capensis
MGP_SPRETEiJ_G0026347	Chd1l	95	79.433	ENSPVAG00000006084	CHD1L	99	79.714	Pteropus_vampyrus
MGP_SPRETEiJ_G0026347	Chd1l	98	64.027	ENSPNYG00000013001	chd1l	95	64.965	Pundamilia_nyererei
MGP_SPRETEiJ_G0026347	Chd1l	98	64.806	ENSPNAG00000011881	chd1l	85	65.450	Pygocentrus_nattereri
MGP_SPRETEiJ_G0026347	Chd1l	100	93.370	ENSRNOG00000017669	Chd1l	100	93.702	Rattus_norvegicus
MGP_SPRETEiJ_G0026347	Chd1l	99	86.180	ENSRBIG00000041272	CHD1L	99	86.180	Rhinopithecus_bieti
MGP_SPRETEiJ_G0026347	Chd1l	97	86.490	ENSRROG00000041354	CHD1L	97	86.406	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0026347	Chd1l	98	76.000	ENSSHAG00000017395	CHD1L	97	76.000	Sarcophilus_harrisii
MGP_SPRETEiJ_G0026347	Chd1l	96	65.734	ENSSFOG00015003649	chd1l	98	63.688	Scleropages_formosus
MGP_SPRETEiJ_G0026347	Chd1l	97	61.695	ENSSMAG00000019377	chd1l	94	61.287	Scophthalmus_maximus
MGP_SPRETEiJ_G0026347	Chd1l	95	64.235	ENSSDUG00000019831	chd1l	94	64.573	Seriola_dumerili
MGP_SPRETEiJ_G0026347	Chd1l	96	63.837	ENSSLDG00000012714	chd1l	95	64.052	Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0026347	Chd1l	99	70.370	ENSSPUG00000016865	CHD1L	98	71.771	Sphenodon_punctatus
MGP_SPRETEiJ_G0026347	Chd1l	97	64.781	ENSSPAG00000017653	chd1l	90	65.192	Stegastes_partitus
MGP_SPRETEiJ_G0026347	Chd1l	98	82.841	ENSSSCG00000006701	CHD1L	97	84.939	Sus_scrofa
MGP_SPRETEiJ_G0026347	Chd1l	96	72.897	ENSTGUG00000013392	-	98	72.897	Taeniopygia_guttata
MGP_SPRETEiJ_G0026347	Chd1l	95	59.390	ENSTNIG00000004902	chd1l	99	59.155	Tetraodon_nigroviridis
MGP_SPRETEiJ_G0026347	Chd1l	96	83.100	ENSTTRG00000011711	CHD1L	98	83.948	Tursiops_truncatus
MGP_SPRETEiJ_G0026347	Chd1l	99	84.589	ENSUAMG00000021991	CHD1L	99	84.702	Ursus_americanus
MGP_SPRETEiJ_G0026347	Chd1l	99	84.364	ENSUMAG00000009733	CHD1L	99	84.364	Ursus_maritimus
MGP_SPRETEiJ_G0026347	Chd1l	99	84.382	ENSVVUG00000007316	CHD1L	93	85.223	Vulpes_vulpes
MGP_SPRETEiJ_G0026347	Chd1l	97	62.089	ENSXCOG00000008336	chd1l	84	62.933	Xiphophorus_couchianus
MGP_SPRETEiJ_G0026347	Chd1l	98	64.706	ENSXMAG00000015898	chd1l	96	60.023	Xiphophorus_maculatus